Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004130 Carpinus fangiana HOM05D006223 ORTHO05D009080 6.8e-96 354.0 179 100.0
Haze_15285 Corylus avellana HOM05D006223 ORTHO05D009080 4.8e-81 304.7 163 97.5
CiPaw.01G004700 Carya illinoinensis HOM05D006223 ORTHO05D009080 7.4e-58 227.6 142 82.4
Dinv04050 Davidia involucrata HOM05D006223 ORTHO05D009080 5.8e-55 218.0 147 75.5
GSVIVG01000109001 Vitis vinifera HOM05D006223 ORTHO05D009080 1.3e-51 206.8 141 77.3
GSVIVG01000118001 Vitis vinifera HOM05D006223 ORTHO05D009080 3.9e-51 205.3 141 76.6
Duzib147G0613 Durio zibethinus HOM05D006223 ORTHO05D009080 1.5e-50 203.4 143 72.0
TAR625G1165 Trochodendron aralioides HOM05D006223 ORTHO05D009080 4.3e-50 201.8 150 73.3
CSS0009729 Camellia sinensis var. sinensis HOM05D006223 ORTHO05D009080 1.8e-48 196.4 141 72.3
Atru.chr3.1008 Acer truncatum HOM05D006223 ORTHO05D009080 3.1e-48 195.7 141 73.0
Lj7A96T45 Lonicera japonica HOM05D006223 ORTHO05D009080 4.1e-48 195.3 141 70.2
PGR004G2352 Punica granatum HOM05D006223 ORTHO05D009080 9.0e-48 194.1 142 69.7
Ciclev10026365m.g Citrus clementina HOM05D006223 ORTHO05D009080 1.2e-47 193.7 143 69.9
Lj4g0019733 Lotus japonicus HOM05D006223 ORTHO05D009080 1.2e-47 193.7 146 68.5
Phvul.003G235100 Phaseolus vulgaris HOM05D006223 ORTHO05D009080 3.4e-47 192.2 141 69.5
TWI73G0604 Tripterygium wilfordii HOM05D006223 ORTHO05D009080 3.4e-47 192.2 144 69.4
Glyma.17G160900 Glycine max HOM05D006223 ORTHO05D009080 4.5e-47 191.8 141 69.5
Manes.12G113900 Manihot esculenta HOM05D006223 ORTHO05D009080 4.5e-47 191.8 146 69.2
Thecc.01G072400 Theobroma cacao HOM05D006223 ORTHO05D009080 5.9e-47 191.4 141 69.5
Actinidia11984 Actinidia chinensis HOM05D006223 ORTHO05D009080 2.9e-46 189.1 144 68.8
TWI09G0585 Tripterygium wilfordii HOM05D006223 ORTHO05D009080 6.5e-46 188.0 141 68.8
VMungo0251G3324 Vigna mungo HOM05D006223 ORTHO05D009080 6.5e-46 188.0 141 68.8
Sed0023944 Sechium edule HOM05D006223 ORTHO05D009080 1.1e-45 187.2 144 68.1
TPR.G24252 Trifolium pratense HOM05D006223 ORTHO05D009080 1.1e-45 187.2 144 65.3
Nn5g30588 Nelumbo nucifera HOM05D006223 ORTHO05D009080 1.9e-45 186.4 146 67.8
Hund16399 Selenicereus undatus HOM05D006223 ORTHO05D009080 1.9e-45 186.4 146 66.4
Cpa.g.sc6.19 Carica papaya HOM05D006223 ORTHO05D009080 2.5e-45 186.0 140 67.9
Gohir.A11G215000 Gossypium hirsutum HOM05D006223 ORTHO05D009080 2.5e-45 186.0 141 66.0
Nitab4.5_0000142g0070 Nicotiana tabacum HOM05D006223 ORTHO05D009080 3.2e-45 185.7 141 69.5
Gorai.007G223400 Gossypium raimondii HOM05D006223 ORTHO05D009080 5.5e-45 184.9 141 65.2
PGSC0003DMG400021418 Solanum tuberosum HOM05D006223 ORTHO05D009080 5.5e-45 184.9 140 67.9
CANSAT01G0277 Cannabis sativa HOM05D006223 ORTHO05D009080 7.2e-45 184.5 142 71.1
MELO3C020909.2 Cucumis melo HOM05D006223 ORTHO05D009080 1.2e-44 183.7 145 65.5
Gohir.D11G208400 Gossypium hirsutum HOM05D006223 ORTHO05D009080 1.6e-44 183.3 141 64.5
Ca_22107_v3 Cicer arietinum L. HOM05D006223 ORTHO05D009080 2.1e-44 183.0 141 64.5
Ca_22114_v3 Cicer arietinum L. HOM05D006223 ORTHO05D009080 2.1e-44 183.0 141 64.5
Medtr4g097030 Medicago truncatula HOM05D006223 ORTHO05D009080 2.1e-44 183.0 141 63.8
Eucgr.I00706 Eucalyptus grandis HOM05D006223 ORTHO05D009080 2.7e-44 182.6 153 62.1
MD15G1297100 Malus domestica HOM05D006223 ORTHO05D009080 6.1e-44 181.4 149 66.4
Nitab4.5_0002119g0100 Nicotiana tabacum HOM05D006223 ORTHO05D009080 6.1e-44 181.4 141 68.1
Sopen02g036940 Solanum pennellii HOM05D006223 ORTHO05D009080 7.9e-44 181.0 140 65.7
Psat4g081960 Pisum sativum HOM05D006223 ORTHO05D009080 1.4e-43 180.3 141 63.1
Solyc02g092390.3 Solanum lycopersicum HOM05D006223 ORTHO05D009080 1.4e-43 180.3 140 65.7
Sabra01G0139200 Salix brachista HOM05D006223 ORTHO05D009080 1.8e-43 179.9 143 66.4
Cc06_g22830 Coffea canephora HOM05D006223 ORTHO05D009080 2.3e-43 179.5 138 67.4
DCAR_025799 Daucus carota HOM05D006223 ORTHO05D009080 2.3e-43 179.5 144 63.2
Glyma.05G105500 Glycine max HOM05D006223 ORTHO05D009080 2.3e-43 179.5 142 66.9
CAN.G1075.35 Capsicum annuum HOM05D006223 ORTHO05D009080 3.0e-43 179.1 142 65.5
PSO170G6824 Papaver somniferum HOM05D006223 ORTHO05D009080 5.1e-43 178.3 141 67.4
RcHm_v2.0_Chr2g0108001 Rosa chinensis HOM05D006223 ORTHO05D009080 1.1e-42 177.2 141 68.1
Aqoxy5G00869 Aquilegia oxysepala HOM05D006223 ORTHO05D009080 1.5e-42 176.8 142 66.2
Lalb_Chr05g0225861 Lupinus albus HOM05D006223 ORTHO05D009080 1.5e-42 176.8 140 65.7
Peaxi162Scf00548g00643 Petunia axillaris HOM05D006223 ORTHO05D009080 1.5e-42 176.8 142 66.9
FAN28G1261 Fragaria x ananassa HOM05D006223 ORTHO05D009080 2.5e-42 176.0 143 67.8
FAN26G2055 Fragaria x ananassa HOM05D006223 ORTHO05D009080 5.7e-42 174.9 143 67.8
HanXRQChr15g0472641 Helianthus annuus HOM05D006223 ORTHO05D009080 7.4e-42 174.5 142 64.1
Prupe.6G221000 Prunus persica HOM05D006223 ORTHO05D009080 9.7e-42 174.1 144 65.3
vmacro05408 Vaccinium macrocarpon HOM05D006223 ORTHO05D009080 4.8e-41 171.8 179 55.3
Potri.001G172500 Populus trichocarpa HOM05D006223 ORTHO05D009080 6.3e-41 171.4 141 66.0
AUR62004007 Chenopodium quinoa HOM05D006223 ORTHO05D009080 1.8e-40 169.9 144 61.1
AUR62040240 Chenopodium quinoa HOM05D006223 ORTHO05D009080 1.8e-40 169.9 146 61.0
ECA246G3554 Erigeron canadensis HOM05D006223 ORTHO05D009080 1.5e-39 166.8 141 62.4
FAN19G0818 Fragaria x ananassa HOM05D006223 ORTHO05D009080 1.5e-39 166.8 142 64.8
arahy.Tifrunner.gnm1.ann1.BP3FRD Arachis hypogaea HOM05D006223 ORTHO05D009080 2.0e-39 166.4 150 62.0
FvH4_1g17670 Fragaria vesca HOM05D006223 ORTHO05D009080 2.0e-39 166.4 143 64.3
Migut.H00350 Erythranthe guttata HOM05D006223 ORTHO05D009080 4.5e-39 165.2 147 56.5
Lsat_1_v5_gn_3_86181 Lactuca sativa HOM05D006223 ORTHO05D009080 7.7e-39 164.5 142 59.2
ClCG02G012630 Citrullus lanatus HOM05D003401 ORTHO05D003906 6.5e-38 161.4 127 66.9
Ah.03g140550 Amaranthus hybridus HOM05D006223 ORTHO05D009080 8.5e-38 161.0 146 58.9
THA.LOC104827599 Tarenaya hassleriana HOM05D006223 ORTHO05D009080 2.5e-37 159.5 149 53.0
MSTRG.23673 Avicennia marina HOM05D006223 ORTHO05D009080 3.2e-37 159.1 141 55.3
Hma1.2p1_0852F.1_g228470 Hydrangea macrophylla HOM05D006223 ORTHO05D009080 4.2e-37 158.7 113 72.6
Rhsim10G0099700 Rhododendron simsii HOM05D006223 ORTHO05D009080 9.4e-37 157.5 163 55.8
HPP92_024913 Vanilla planifolia HOM05D006223 ORTHO05D009080 7.9e-36 154.5 142 60.6
AL5G29900 Arabidopsis lyrata HOM05D006223 ORTHO05D009080 2.6e-34 149.4 141 52.5
arahy.Tifrunner.gnm1.ann1.83HTFG Arachis hypogaea HOM05D006223 ORTHO05D009080 2.6e-34 149.4 183 50.8
AT3G49890 Arabidopsis thaliana HOM05D006223 ORTHO05D009080 3.3e-34 149.1 141 51.1
Zm00001eb400790 Zea mays HOM05D006223 ORTHO05D009080 7.4e-34 147.9 140 56.4
ATR1153G042 Amborella trichopoda HOM05D006223 ORTHO05D009080 1.3e-33 147.1 144 58.3
SGA_v2.0_scaffold72G24074 Striga asiatica HOM05D006223 ORTHO05D009080 1.1e-32 144.1 153 51.0
Sp5g12220 Schrenkiella parvula HOM05D006223 ORTHO05D009080 5.3e-32 141.7 151 46.4
Aa31LG4G18340 Aethionema arabicum HOM05D006223 ORTHO05D009080 1.3e-30 137.1 144 50.7
Thhalv10010709m.g Eutrema salsugineum HOM05D006223 ORTHO05D009080 2.2e-30 136.3 149 47.0
CSS0032370 Camellia sinensis var. sinensis HOM05D006223 ORTHO05D009080 5.0e-30 135.2 96 76.0
A03p47580 Brassica napus HOM05D006223 ORTHO05D009080 8.5e-30 134.4 152 46.1
CARHR158970 Cardamine hirsuta HOM05D006223 ORTHO05D009080 8.5e-30 134.4 152 45.4
CDE06G0771 Ceratophyllum demersum HOM05D006223 ORTHO05D009080 8.5e-30 134.4 137 51.1
C07p45560 Brassica napus HOM05D006223 ORTHO05D009080 9.4e-29 131.0 152 44.7
BolC7t45077H Brassica oleracea HOM05D006223 ORTHO05D009080 9.4e-29 131.0 152 44.7
Carub.0005s1625 Capsella rubella HOM05D006223 ORTHO05D009080 9.4e-29 131.0 141 45.4
BraA03t13871Z Brassica rapa HOM05D006223 ORTHO05D009080 8.0e-28 127.9 149 46.3
Os03g0201200 Oryza sativa ssp. japonica HOM05D006223 ORTHO05D009080 2.3e-27 126.3 140 50.7
SEGI_10369 Sequoiadendron giganteum HOM05D006223 ORTHO05D009080 1.4e-24 117.1 168 48.2
EL10Ac6g15621 Beta vulgaris HOM05D006223 ORTHO05D009080 9.1e-24 114.4 146 50.0
Sc16g0002890 Simmondsia chinensis HOM05D006223 ORTHO05D009080 6.8e-19 98.2 98 58.2
FAN23G0832 Fragaria x ananassa HOM05D006223 ORTHO05D009080 1.1e-16 90.9 123 48.0
HPP92_024909 Vanilla planifolia HOM05D006223 ORTHO05D009080 1.2e-15 87.4 69 69.6
C08p24920 Brassica napus HOM05D006223 ORTHO05D009080 2.0e-15 86.7 99 42.4
SHI12778 Sapria himalayana HOM05D006223 ORTHO05D009080 7.7e-15 84.7 120 48.3
BolC8t50110H Brassica oleracea HOM05D006223 ORTHO05D009080 1.1e-13 80.9 99 41.4
unitig_21.g20422 Utricularia gibba HOM05D005082 ORTHO05D006474 1.9e-13 80.1 72 59.7
Pp3c5_6560 Physcomitrium patens HOM05D006223 ORTHO05D009080 5.5e-13 78.6 131 37.4
CSS0023916 Camellia sinensis var. sinensis HOM05D006223 ORTHO05D009080 1.8e-11 73.6 52 63.5
BcaB05g23172 Brassica carinata HOM05D006223 ORTHO05D009080 2.3e-11 73.2 135 34.1
AagrBONN_evm.TU.Sc2ySwM_228.3102 Anthoceros agrestis HOM05D004796 ORTHO05D006527 4.4e-10 68.9 135 34.8
COL.COLO4_11574 Corchorus olitorius HOM05D006223 ORTHO05D009080 1.8e-08 63.5 47 59.6


User provided reference genes

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