Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004123 Carpinus fangiana HOM05D000726 ORTHO05D007554 0.0e+00 2379.7 1262 100.0
Haze_15292 Corylus avellana HOM05D000726 ORTHO05D007554 0.0e+00 2279.2 1263 94.5
QL06p039670 Quercus lobata HOM05D000726 ORTHO05D007554 0.0e+00 1796.9 1265 76.0
MD02G1184600 Malus domestica HOM05D000726 ORTHO05D007554 0.0e+00 1572.0 1261 65.6
Manes.13G112300 Manihot esculenta HOM05D000726 ORTHO05D007554 0.0e+00 1544.6 1266 64.6
RcHm_v2.0_Chr2g0138631 Rosa chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1525.8 1268 64.0
CSS0015479 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1516.5 1273 65.0
FvH4_6g31560 Fragaria vesca HOM05D000726 ORTHO05D007554 0.0e+00 1515.0 1264 63.7
FAN05G3645 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1511.1 1264 63.6
Ciclev10024730m.g Citrus clementina HOM05D000726 ORTHO05D007554 0.0e+00 1507.7 1265 63.3
FAN14G0573 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1507.3 1265 63.3
CANSAT01G3261 Cannabis sativa HOM05D000726 ORTHO05D007554 0.0e+00 1498.8 1267 62.5
TWI09G1290 Tripterygium wilfordii HOM05D000726 ORTHO05D007554 0.0e+00 1483.8 1265 63.2
Atru.chr3.177 Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1482.2 1267 63.2
CSS0022432 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1480.7 1273 63.8
Gorai.007G222900 Gossypium raimondii HOM05D000726 ORTHO05D007554 0.0e+00 1478.0 1266 62.6
Gohir.D11G207900 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1473.0 1266 62.6
Gohir.A11G215400 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1472.6 1266 62.8
TAR376G0399 Trochodendron aralioides HOM05D000726 ORTHO05D007554 0.0e+00 1462.2 1281 64.1
Duzib147G0272 Durio zibethinus HOM05D000726 ORTHO05D007554 0.0e+00 1460.7 1267 62.7
vmacro05404 Vaccinium macrocarpon HOM05D000726 ORTHO05D007554 0.0e+00 1449.1 1288 61.2
Potri.007G055400 Populus trichocarpa HOM05D000726 ORTHO05D007554 0.0e+00 1441.0 1269 63.4
ClCG01G017520 Citrullus lanatus HOM05D000726 ORTHO05D007554 0.0e+00 1427.2 1274 61.1
Sed0012994 Sechium edule HOM05D000726 ORTHO05D007554 0.0e+00 1422.1 1270 60.6
arahy.Tifrunner.gnm1.ann1.1ZHU8Z Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1416.0 1274 60.0
COL.COLO4_11566 Corchorus olitorius HOM05D000726 ORTHO05D007554 0.0e+00 1409.4 1267 61.4
Actinidia36435 Actinidia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1404.8 1271 60.9
CsaV3_6G044070 Cucumis sativus L. HOM05D000726 ORTHO05D007554 0.0e+00 1399.0 1273 59.7
Phvul.002G011500 Phaseolus vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1395.9 1264 59.3
MELO3C007629.2 Cucumis melo HOM05D000726 ORTHO05D007554 0.0e+00 1394.4 1278 59.5
Glyma.01G193500 Glycine max HOM05D000726 ORTHO05D007554 0.0e+00 1387.1 1267 59.5
arahy.Tifrunner.gnm1.ann1.6361M0 Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1382.1 1257 59.6
FAN02G1686 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1379.0 1194 62.1
Medtr5g015600 Medicago truncatula HOM05D000726 ORTHO05D007554 0.0e+00 1375.1 1276 57.8
VMungo1215G2083 Vigna mungo HOM05D000726 ORTHO05D007554 0.0e+00 1373.6 1265 58.6
Ca_24700_v3 Cicer arietinum L. HOM05D000726 ORTHO05D007554 0.0e+00 1372.1 1268 58.2
Nn4g25316 Nelumbo nucifera HOM05D000726 ORTHO05D007554 0.0e+00 1363.6 1268 59.0
Lalb_Chr09g0323571 Lupinus albus HOM05D000726 ORTHO05D007554 0.0e+00 1360.9 1265 57.9
Lj2g0006912 Lotus japonicus HOM05D000726 ORTHO05D007554 0.0e+00 1357.8 1266 58.5
Atru.BG.105.p Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1352.8 1106 65.0
PGR102G1358 Punica granatum HOM05D000726 ORTHO05D007554 0.0e+00 1341.3 1265 57.4
TPR.G34847 Trifolium pratense HOM05D000726 ORTHO05D007554 0.0e+00 1321.6 1265 56.4
THA.LOC104819266 Tarenaya hassleriana HOM05D000726 ORTHO05D007554 0.0e+00 1318.1 1265 57.0
Eucgr.H02305 Eucalyptus grandis HOM05D000726 ORTHO05D007554 0.0e+00 1302.0 1268 56.9
CARHR056360 Cardamine hirsuta HOM05D000726 ORTHO05D007554 0.0e+00 1300.0 1264 56.3
Nitab4.5_0001417g0030 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1299.3 1271 55.9
AL2G19510 Arabidopsis lyrata HOM05D000726 ORTHO05D007554 0.0e+00 1290.4 1266 56.3
Nitab4.5_0006813g0010 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1283.9 1271 55.8
Aa31LG2G2150 Aethionema arabicum HOM05D000726 ORTHO05D007554 0.0e+00 1281.9 1266 55.2
Sp5g19220 Schrenkiella parvula HOM05D000726 ORTHO05D007554 0.0e+00 1281.5 1265 55.4
PGSC0003DMG400009094 Solanum tuberosum HOM05D000726 ORTHO05D007554 0.0e+00 1279.2 1270 55.0
Sopen03g007820 Solanum pennellii HOM05D000726 ORTHO05D007554 0.0e+00 1266.1 1270 54.3
Thhalv10023223m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1263.1 1262 55.0
Solyc03g044020.4 Solanum lycopersicum HOM05D000726 ORTHO05D007554 0.0e+00 1261.9 1270 54.4
Migut.H00354 Erythranthe guttata HOM05D000726 ORTHO05D007554 0.0e+00 1258.0 1272 55.3
Hund16395 Selenicereus undatus HOM05D000726 ORTHO05D007554 0.0e+00 1258.0 1258 56.2
Sc03g0002340 Simmondsia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1256.5 1255 55.7
AT1G64960 Arabidopsis thaliana HOM05D000726 ORTHO05D007554 0.0e+00 1255.4 1266 54.7
Dinv26921 Davidia involucrata HOM05D000726 ORTHO05D007554 0.0e+00 1250.7 1012 66.3
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 0.0e+00 1248.8 1217 58.0
Peaxi162Scf00118g01929 Petunia axillaris HOM05D000726 ORTHO05D007554 0.0e+00 1246.9 1277 54.0
FAN09G4729 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1243.8 1194 58.0
Psat2g171280 Pisum sativum HOM05D000726 ORTHO05D007554 0.0e+00 1239.9 1302 53.7
MSTRG.23676 Avicennia marina HOM05D000726 ORTHO05D007554 0.0e+00 1238.8 1271 54.7
Thhalv10000018m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1238.0 1263 53.5
EL10Ac6g15628 Beta vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1237.6 1256 54.6
CAN.G278.12 Capsicum annuum HOM05D000726 ORTHO05D007554 0.0e+00 1233.0 1271 53.3
Sabra07G0047700 Salix brachista HOM05D000726 ORTHO05D007554 0.0e+00 1228.4 1185 58.9
Aqoxy6G02647 Aquilegia oxysepala HOM05D000726 ORTHO05D007554 0.0e+00 1224.2 1266 53.9
Cc07_g07020 Coffea canephora HOM05D000726 ORTHO05D007554 0.0e+00 1206.8 1239 54.6
C06p38860 Brassica napus HOM05D000726 ORTHO05D007554 0.0e+00 1204.1 1274 53.5
PSO541G0636 Papaver somniferum HOM05D000726 ORTHO05D007554 0.0e+00 1200.7 1273 53.4
BolC6t38979H Brassica oleracea HOM05D000726 ORTHO05D007554 0.0e+00 1200.3 1275 53.1
PSO675G6338 Papaver somniferum HOM05D000726 ORTHO05D007554 0.0e+00 1197.6 1269 53.3
HanXRQChr12g0373111 Helianthus annuus HOM05D000726 ORTHO05D007554 0.0e+00 1191.0 1271 52.1
Prupe.6G221900 Prunus persica HOM05D000726 ORTHO05D007554 0.0e+00 1189.5 940 67.0
Lj7A95G20 Lonicera japonica HOM05D000726 ORTHO05D007554 0.0e+00 1180.2 1265 53.3
BcaB03g15339 Brassica carinata HOM05D000726 ORTHO05D007554 0.0e+00 1179.5 1274 52.1
AUR62003999 Chenopodium quinoa HOM05D000726 ORTHO05D007554 0.0e+00 1177.9 1253 53.3
Ah.03g140460 Amaranthus hybridus HOM05D000726 ORTHO05D007554 0.0e+00 1172.1 1256 52.9
SHI31766 Sapria himalayana HOM05D000726 ORTHO05D007554 0.0e+00 1158.7 1280 52.0
SGA_v2.0_scaffold15G07449 Striga asiatica HOM05D000726 ORTHO05D007554 0.0e+00 1152.1 1323 50.1
DCAR_010826 Daucus carota HOM05D000726 ORTHO05D007554 0.0e+00 1151.7 1257 51.8
Lsat_1_v5_gn_4_160781 Lactuca sativa HOM05D000726 ORTHO05D007554 0.0e+00 1150.2 1274 50.8
BraA07t30892Z Brassica rapa HOM05D000726 ORTHO05D007554 0.0e+00 1145.2 1277 51.9
Thecc.01G071800 Theobroma cacao HOM05D000726 ORTHO05D007554 0.0e+00 1135.9 952 64.4
ECA232G2303 Erigeron canadensis HOM05D000726 ORTHO05D007554 0.0e+00 1120.9 1277 50.0
Cpa.g.sc6.26 Carica papaya HOM05D000726 ORTHO05D007554 0.0e+00 1107.0 868 68.2
Thhalv10006613m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1098.6 1223 51.5
Thhalv10001287m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1091.3 1264 49.8
Carub.0002s1010 Capsella rubella HOM05D000726 ORTHO05D007554 0.0e+00 1080.1 1049 54.8
AUR62040247 Chenopodium quinoa HOM05D000726 ORTHO05D007554 7.3e-277 958.0 980 54.2
A07p32680 Brassica napus HOM05D000726 ORTHO05D007554 2.9e-257 892.9 861 57.0
GSVIVG01000124001 Vitis vinifera HOM05D000726 ORTHO05D007554 6.2e-252 875.2 1010 51.7
CDE04G3158 Ceratophyllum demersum HOM05D000726 ORTHO05D007554 8.7e-238 828.2 1251 42.7
unitig_0.g505 Utricularia gibba HOM05D000726 ORTHO05D007554 6.5e-233 812.0 1300 40.5
ATR0208G028 Amborella trichopoda HOM05D000726 ORTHO05D007554 3.1e-227 793.1 981 47.5
Zm00001eb051460 Zea mays HOM05D000726 ORTHO05D007554 1.3e-225 787.7 1263 40.1
SalBow3G2688 Salvia bowleyana HOM05D000726 ORTHO05D007554 1.6e-223 780.8 906 48.1
Os03g0616500 Oryza sativa ssp. japonica HOM05D000726 ORTHO05D007554 7.5e-181 639.0 797 45.4
HPP92_014039 Vanilla planifolia HOM05D000726 ORTHO05D007554 8.3e-172 609.0 578 57.1
Mapoly0045s0033 Marchantia polymorpha HOM05D000726 ORTHO05D007554 2.4e-171 607.4 1134 36.6
SEGI_06920 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 1.0e-169 602.1 888 40.7
CiPaw.01G005300 Carya illinoinensis HOM05D000726 ORTHO05D007554 7.5e-165 585.9 457 68.9
SMO364G0657 Selaginella moellendorffii HOM05D000726 ORTHO05D007554 3.2e-163 580.5 809 41.5
CiPaw.01G005400 Carya illinoinensis HOM05D000726 ORTHO05D007554 7.8e-162 575.9 428 73.4
AagrBONN_evm.TU.Sc2ySwM_117.495 Anthoceros agrestis HOM05D000726 ORTHO05D007554 5.8e-157 559.7 772 42.1
HPP92_028352 Vanilla planifolia HOM05D000726 ORTHO05D007554 4.1e-147 526.9 637 46.6
SEGI_38739 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 6.9e-118 429.9 619 43.0
Oeu003558.1 Olea europaea HOM05D000726 ORTHO05D007554 7.9e-114 416.4 370 63.8
HPP92_014040 Vanilla planifolia HOM05D000726 ORTHO05D007554 2.9e-100 371.3 660 35.8
Glyma.11G048432 Glycine max HOM05D000726 ORTHO05D007554 5.0e-100 370.5 236 78.8
Cpa.g.sc6.25 Carica papaya HOM05D000726 ORTHO05D007554 2.5e-99 368.2 382 53.4
Sabra16G0084600 Salix brachista HOM05D000726 ORTHO05D007554 2.7e-98 364.8 362 59.4
Sabra11G0026400 Salix brachista HOM05D000726 ORTHO05D007554 2.3e-97 361.7 351 60.4
Sabra11G0056500 Salix brachista HOM05D000726 ORTHO05D007554 7.4e-96 356.7 351 60.1
Glyma.11G048366 Glycine max HOM05D000726 ORTHO05D007554 1.4e-81 309.3 397 45.3
PRCOL_00006071 Prasinoderma coloniale HOM05D000726 ORTHO05D007554 1.2e-80 306.2 479 34.4
RcHm_v2.0_Chr2g0138441 Rosa chinensis HOM05D000726 ORTHO05D007554 3.1e-70 271.6 376 45.5
Cre06.g262800 Chlamydomonas reinhardtii HOM05D000726 ORTHO05D007554 1.2e-64 253.1 446 34.8
CBR_g29418 Chara braunii HOM05D000019 ORTHO05D000002 1.6e-61 242.7 340 37.6
Nn1g04578 Nelumbo nucifera HOM05D000726 ORTHO05D007554 2.4e-54 218.8 302 42.4
Glyma.08G243550 Glycine max HOM05D000726 ORTHO05D025659 2.6e-48 198.7 169 58.0
SEGI_24863 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 3.9e-44 184.9 302 36.4
ATR0208G027 Amborella trichopoda HOM05D000726 ORTHO05D007554 1.3e-36 159.8 312 38.8
Nn1g04577 Nelumbo nucifera HOM05D000726 ORTHO05D007554 6.0e-29 134.4 131 56.5
Psat0s3193g0080 Pisum sativum HOM05D000726 ORTHO05D025659 4.0e-25 121.7 143 44.8
Psat3g174600 Pisum sativum HOM05D000726 ORTHO05D025659 1.2e-24 120.2 115 52.2
Psat3g172760 Pisum sativum HOM05D000726 ORTHO05D025659 4.9e-23 114.8 123 47.2
Psat3g174680 Pisum sativum HOM05D000726 ORTHO05D025659 4.9e-23 114.8 123 47.2
SEGI_23696 Sequoiadendron giganteum HOM05D000726 ORTHO05D000001 5.1e-20 104.8 397 28.0
Lj7C94G0 Lonicera japonica HOM05D000726 ORTHO05D007554 4.3e-19 101.7 206 35.4
Lsat_1_v5_gn_2_113660 Lactuca sativa HOM05D000726 ORTHO05D007554 2.5e-11 75.9 61 57.4
Zm00001eb060820 Zea mays HOM05D000726 ORTHO05D007554 4.0e-09 68.6 153 30.1


User provided reference genes

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