Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.1e-275 952.6 453 100.0
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 3.4e-261 904.4 432 99.1
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 4.3e-256 887.5 451 90.5
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 5.9e-253 877.1 453 89.2
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 1.4e-251 872.5 453 89.4
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 2.1e-250 868.6 453 88.5
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 4.6e-250 867.5 448 89.5
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 4.6e-250 867.5 453 88.3
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 3.0e-249 864.8 453 87.4
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 5.1e-249 864.0 451 88.0
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 5.1e-249 864.0 451 89.6
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.5e-248 862.4 453 87.6
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 2.0e-248 862.1 453 87.4
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 2.0e-248 862.1 451 87.6
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 2.0e-248 862.1 450 88.9
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 3.3e-248 861.3 451 88.0
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 3.3e-248 861.3 453 87.6
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 1.7e-247 859.0 450 88.0
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 2.2e-247 858.6 453 89.6
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 2.8e-247 858.2 450 88.2
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 2.8e-247 858.2 453 86.8
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 3.7e-247 857.8 453 86.3
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 1.1e-246 856.3 449 86.9
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 3.1e-246 854.7 453 87.4
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 5.3e-246 854.0 463 85.7
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 5.3e-246 854.0 453 86.3
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 1.2e-245 852.8 451 86.5
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 2.6e-245 851.7 453 86.8
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 4.2e-243 844.3 448 88.2
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 4.2e-243 844.3 448 88.2
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 9.4e-243 843.2 453 85.7
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 2.1e-242 842.0 448 86.8
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 2.1e-242 842.0 452 85.6
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 2.1e-242 842.0 451 84.5
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 2.7e-242 841.6 452 85.8
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 4.7e-242 840.9 453 86.3
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 7.9e-242 840.1 449 84.6
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 7.9e-242 840.1 449 85.1
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 1.0e-241 839.7 453 85.7
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 1.0e-241 839.7 453 85.7
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 1.4e-241 839.3 451 86.5
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 1.4e-241 839.3 453 85.9
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 1.8e-241 839.0 444 87.4
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 1.8e-241 839.0 453 85.2
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 1.8e-241 839.0 453 85.9
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 3.0e-241 838.2 450 86.9
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 3.9e-241 837.8 453 85.2
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 8.8e-241 836.6 452 86.1
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 8.8e-241 836.6 452 85.4
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 2.6e-240 835.1 448 84.8
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 4.4e-240 834.3 453 85.9
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 5.7e-240 833.9 453 86.5
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 9.7e-240 833.2 451 86.5
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 1.3e-239 832.8 452 84.7
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 1.3e-239 832.8 448 86.2
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 1.3e-239 832.8 451 84.7
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 1.7e-239 832.4 451 86.0
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 1.7e-239 832.4 453 84.3
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 2.2e-239 832.0 453 85.0
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 3.7e-239 831.2 446 85.9
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 4.8e-239 830.9 451 84.7
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 4.8e-239 830.9 451 86.0
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 8.2e-239 830.1 453 84.5
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 1.8e-238 828.9 453 85.2
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 2.4e-238 828.6 451 83.8
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 3.1e-238 828.2 447 86.4
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 4.1e-238 827.8 453 84.5
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 4.1e-238 827.8 453 84.3
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 4.1e-238 827.8 453 83.7
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 7.0e-238 827.0 447 84.8
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 7.0e-238 827.0 450 86.0
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 7.0e-238 827.0 453 85.0
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 9.1e-238 826.6 453 84.3
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 1.2e-237 826.2 447 85.5
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 2.0e-237 825.5 453 85.0
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 2.0e-237 825.5 452 84.3
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 2.0e-237 825.5 447 86.4
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 2.6e-237 825.1 451 84.5
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 2.6e-237 825.1 453 83.2
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 4.5e-237 824.3 453 83.2
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 2.2e-236 822.0 453 84.3
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 2.9e-236 821.6 453 84.1
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 2.9e-236 821.6 483 80.1
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 3.8e-236 821.2 453 84.1
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 3.8e-236 821.2 453 84.1
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 3.8e-236 821.2 449 84.6
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 8.5e-236 820.1 453 83.9
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 1.5e-235 819.3 451 84.5
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 1.9e-235 818.9 440 84.3
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 3.2e-235 818.1 451 82.9
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 5.5e-235 817.4 454 83.5
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 1.6e-234 815.8 496 77.6
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 1.8e-233 812.4 446 85.0
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 3.0e-233 811.6 448 83.3
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 4.0e-233 811.2 469 81.0
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 1.2e-232 809.7 447 85.2
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 3.3e-232 808.1 433 84.3
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 3.7e-231 804.7 447 82.8
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 2.4e-230 802.0 452 83.0
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 5.3e-230 800.8 443 83.3
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 1.1e-227 793.1 447 82.8
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 1.5e-227 792.7 448 83.3
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 1.6e-226 789.3 451 79.4
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 8.0e-226 786.9 451 78.7
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 4.4e-224 781.2 452 81.4
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 1.3e-223 779.6 453 80.4
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 1.1e-222 776.5 412 86.7
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 9.1e-222 773.5 451 78.7
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.8e-214 749.2 464 81.0
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 4.0e-209 731.5 457 76.8
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 4.0e-209 731.5 443 78.8
Psat0ss839g0200 Pisum sativum HOM05D004306 ORTHO05D005055 9.8e-208 726.9 380 88.4
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 3.0e-204 715.3 448 74.6
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 2.8e-202 708.8 446 72.6
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 1.2e-200 703.4 452 72.1
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 4.9e-199 698.0 377 84.4
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 4.1e-198 694.9 388 82.0
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 3.5e-189 665.2 448 72.8
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 3.2e-182 642.1 452 70.8
Sc16g0000120 Simmondsia chinensis HOM05D004306 ORTHO05D005055 1.5e-179 633.3 334 88.6
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 1.9e-163 579.7 451 64.3
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 2.8e-162 575.9 434 66.6
arahy.Tifrunner.gnm1.ann1.HR4B5C Arachis hypogaea HOM05D004306 ORTHO05D005055 9.9e-160 567.4 298 89.3
Sc16g0000140 Simmondsia chinensis HOM05D004306 ORTHO05D005055 1.3e-156 557.0 295 88.1
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 1.5e-152 543.5 316 76.6
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 1.3e-148 530.4 288 83.3
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 2.5e-134 483.0 451 57.0
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 8.0e-125 451.4 379 58.8
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 8.8e-124 448.0 295 69.2
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 6.5e-111 405.2 281 69.4
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 4.9e-90 335.9 199 75.9
DCAR_000330 Daucus carota HOM05D004306 ORTHO05D005055 2.7e-80 303.5 162 85.2
arahy.Tifrunner.gnm1.ann1.ZW9ABU Arachis hypogaea HOM05D004306 ORTHO05D005055 3.5e-72 276.6 153 79.7
Sc16g0000130 Simmondsia chinensis HOM05D004306 ORTHO05D005055 2.5e-70 270.4 153 76.5
MD00G1015600 Malus domestica HOM05D004306 ORTHO05D005055 3.6e-69 266.5 198 68.7
Cfa025028 Carpinus fangiana HOM05D004306 ORTHO05D005055 6.2e-69 265.8 277 49.5
SEGI_23023 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 2.4e-68 263.8 148 78.4
EL10Ac5g12500 Beta vulgaris HOM05D004306 ORTHO05D005055 4.4e-67 259.6 140 85.0
EL10Ac1g01850 Beta vulgaris HOM05D004306 ORTHO05D005055 1.7e-66 257.7 147 78.9
SEGI_27901 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.2e-64 251.5 147 78.2
SEGI_13173 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.7e-63 247.7 194 61.3
COL.COLO4_11551 Corchorus olitorius HOM05D004306 ORTHO05D005055 3.1e-52 210.3 135 74.8
TPR.G23871 Trifolium pratense HOM05D004306 ORTHO05D005055 4.5e-51 206.5 111 87.4
RcHm_v2.0_Chr2g0107621 Rosa chinensis HOM05D004306 ORTHO05D005055 1.1e-49 201.8 138 67.4
CDE07G1667 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 7.6e-43 179.1 117 70.1
EL10Ac4g09102 Beta vulgaris HOM05D004306 ORTHO05D005055 3.9e-39 166.8 132 59.1
ATR0515G001 Amborella trichopoda HOM05D004306 ORTHO05D005055 4.6e-24 116.7 55 94.5
Cfa004111 Carpinus fangiana HOM05D004306 ORTHO05D005055 2.5e-22 110.9 78 67.9
vmacro05396 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 1.7e-21 108.2 74 68.9
AUR62003988 Chenopodium quinoa HOM05D004306 ORTHO05D005055 2.8e-21 107.5 66 75.8
SGA_v2.0_scaffold21G09394 Striga asiatica HOM05D004306 ORTHO05D005055 5.3e-20 103.2 66 68.2
FAN28G1106 Fragaria x ananassa HOM05D004306 ORTHO05D005055 4.5e-19 100.1 68 67.6
Lj4C160G10 Lonicera japonica HOM05D004306 ORTHO05D005055 1.4e-17 95.1 72 63.9
Psat5g012000 Pisum sativum HOM05D004306 ORTHO05D005055 2.5e-17 94.4 83 53.0
Dinv30076 Davidia involucrata HOM05D004306 ORTHO05D005055 9.4e-17 92.4 80 55.0
SEGI_03818 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 5.1e-15 86.7 67 58.2
Cc07_g06910 Coffea canephora HOM05D004306 ORTHO05D005055 2.0e-14 84.7 49 71.4
Nitab4.5_0000032g0200 Nicotiana tabacum HOM05D004306 ORTHO05D005055 1.4e-12 78.6 52 63.5
EL10Ac4g09101 Beta vulgaris HOM05D004306 ORTHO05D005055 2.4e-12 77.8 41 80.5
Eucgr.H02294 Eucalyptus grandis HOM05D004306 ORTHO05D005055 1.2e-11 75.5 66 51.5
PRCOL_00001243 Prasinoderma coloniale HOM05D004306 ORTHO05D005055 2.6e-11 74.3 364 25.5
Thecc.01G069900 Theobroma cacao HOM05D004306 ORTHO05D005055 3.2e-09 67.4 36 83.3


User provided reference genes

Program Settings