Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004111 Carpinus fangiana HOM05D004306 ORTHO05D005055 3.9e-47 191.0 92 100.0
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 4.1e-36 154.5 73 98.6
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 2.7e-32 141.7 78 88.5
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 2.3e-31 138.7 78 87.2
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 4.0e-31 137.9 78 83.3
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 8.8e-31 136.7 78 78.2
FAN28G1106 Fragaria x ananassa HOM05D004306 ORTHO05D005055 8.8e-31 136.7 88 77.3
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 3.3e-30 134.8 77 80.5
vmacro05396 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 4.4e-30 134.4 74 79.7
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 7.5e-30 133.7 76 78.9
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 1.3e-29 132.9 77 81.8
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 1.7e-29 132.5 79 78.5
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 1.7e-29 132.5 78 79.5
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 3.7e-29 131.3 78 80.8
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 1.1e-28 129.8 78 78.2
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 1.8e-28 129.0 78 75.6
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 1.8e-28 129.0 78 76.9
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 4.1e-28 127.9 76 73.7
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 9.1e-28 126.7 73 78.1
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 9.1e-28 126.7 75 76.0
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 1.2e-27 126.3 78 76.9
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 2.0e-27 125.6 78 73.1
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 2.7e-27 125.2 78 76.9
Lj4C160G10 Lonicera japonica HOM05D004306 ORTHO05D005055 2.7e-27 125.2 77 77.9
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 3.5e-27 124.8 78 71.8
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 4.5e-27 124.4 78 74.4
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 5.9e-27 124.0 76 73.7
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 5.9e-27 124.0 78 74.4
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 1.0e-26 123.2 78 74.4
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.3e-26 122.9 71 80.3
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 1.3e-26 122.9 78 75.6
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 1.3e-26 122.9 76 77.6
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 1.3e-26 122.9 78 74.4
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 1.7e-26 122.5 74 77.0
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 1.7e-26 122.5 78 69.2
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 1.7e-26 122.5 73 75.3
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 2.2e-26 122.1 74 77.0
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 2.2e-26 122.1 78 73.1
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 2.9e-26 121.7 78 71.8
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 3.8e-26 121.3 78 73.1
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 5.0e-26 120.9 78 73.1
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 5.0e-26 120.9 75 74.7
AUR62003988 Chenopodium quinoa HOM05D004306 ORTHO05D005055 6.5e-26 120.6 70 78.6
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 6.5e-26 120.6 81 72.8
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 8.5e-26 120.2 78 69.2
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 1.1e-25 119.8 78 71.8
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 1.5e-25 119.4 75 69.3
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 2.5e-25 118.6 75 74.7
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 4.2e-25 117.9 77 72.7
SGA_v2.0_scaffold21G09394 Striga asiatica HOM05D004306 ORTHO05D005055 4.2e-25 117.9 68 76.5
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 7.2e-25 117.1 78 71.8
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 7.2e-25 117.1 78 71.8
EL10Ac1g01850 Beta vulgaris HOM05D004306 ORTHO05D005055 7.2e-25 117.1 75 70.7
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 1.2e-24 116.3 78 69.2
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.2e-24 116.3 78 70.5
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 1.6e-24 115.9 77 72.7
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 3.6e-24 114.8 78 67.9
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 3.6e-24 114.8 78 69.2
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 3.6e-24 114.8 78 66.7
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 4.7e-24 114.4 78 71.8
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 6.1e-24 114.0 78 66.7
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 6.1e-24 114.0 78 67.9
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 8.0e-24 113.6 73 68.5
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 8.0e-24 113.6 78 69.2
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 8.0e-24 113.6 78 67.9
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.0e-23 113.2 78 69.2
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 1.0e-23 113.2 78 67.9
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 1.8e-23 112.5 78 69.2
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 3.0e-23 111.7 74 67.6
Dinv30076 Davidia involucrata HOM05D004306 ORTHO05D005055 3.0e-23 111.7 103 54.4
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 3.0e-23 111.7 72 68.1
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 4.0e-23 111.3 78 67.9
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 5.2e-23 110.9 78 65.4
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 5.2e-23 110.9 73 71.2
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 6.8e-23 110.5 73 68.5
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 8.8e-23 110.2 78 64.1
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 1.2e-22 109.8 70 68.6
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 1.5e-22 109.4 73 68.5
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 2.0e-22 109.0 63 76.2
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 2.0e-22 109.0 74 71.6
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 2.0e-22 109.0 78 62.8
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 2.6e-22 108.6 78 66.7
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 2.6e-22 108.6 78 64.1
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 4.4e-22 107.8 78 66.7
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 4.4e-22 107.8 78 65.4
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 4.4e-22 107.8 78 61.5
arahy.Tifrunner.gnm1.ann1.ZW9ABU Arachis hypogaea HOM05D004306 ORTHO05D005055 5.7e-22 107.5 78 66.7
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 5.7e-22 107.5 78 65.4
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 5.7e-22 107.5 78 64.1
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 5.7e-22 107.5 78 64.1
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 7.5e-22 107.1 78 62.8
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 7.5e-22 107.1 78 62.8
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 7.5e-22 107.1 78 62.8
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 7.5e-22 107.1 78 62.8
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 7.5e-22 107.1 78 62.8
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 9.8e-22 106.7 78 60.3
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 1.3e-21 106.3 78 62.8
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 1.3e-21 106.3 73 65.8
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 2.2e-21 105.5 78 60.3
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 2.2e-21 105.5 78 62.8
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 2.2e-21 105.5 78 62.8
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 2.2e-21 105.5 78 62.8
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 3.7e-21 104.8 78 62.8
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 4.8e-21 104.4 78 64.1
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 4.8e-21 104.4 78 61.5
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 6.3e-21 104.0 78 65.4
Psat5g012000 Pisum sativum HOM05D004306 ORTHO05D005055 6.3e-21 104.0 72 62.5
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 1.1e-20 103.2 78 60.3
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 1.1e-20 103.2 78 61.5
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 1.4e-20 102.8 78 59.0
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 1.4e-20 102.8 78 59.0
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 1.4e-20 102.8 78 59.0
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 1.8e-20 102.4 78 60.3
Sc16g0000130 Simmondsia chinensis HOM05D004306 ORTHO05D005055 1.8e-20 102.4 78 61.5
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 2.4e-20 102.1 78 64.1
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 2.4e-20 102.1 73 67.1
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 2.4e-20 102.1 78 61.5
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 3.1e-20 101.7 78 60.3
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 3.1e-20 101.7 78 57.7
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 4.1e-20 101.3 72 63.9
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 4.1e-20 101.3 75 65.3
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 5.4e-20 100.9 68 64.7
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 5.4e-20 100.9 78 60.3
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 5.4e-20 100.9 78 59.0
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 5.4e-20 100.9 78 61.5
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 7.0e-20 100.5 78 57.7
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 7.0e-20 100.5 78 57.7
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 1.2e-19 99.8 78 62.8
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 1.6e-19 99.4 68 64.7
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 2.7e-19 98.6 73 58.9
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 2.7e-19 98.6 61 77.0
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 3.5e-19 98.2 76 56.6
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 5.9e-19 97.4 78 57.7
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 1.0e-18 96.7 73 60.3
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 1.0e-18 96.7 72 62.5
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 3.8e-18 94.7 73 56.2
SEGI_13173 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 3.8e-18 94.7 78 55.1
CDE07G1667 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 6.5e-18 94.0 78 59.0
Cc07_g06910 Coffea canephora HOM05D004306 ORTHO05D005055 1.2e-16 89.7 55 70.9
Eucgr.H02294 Eucalyptus grandis HOM05D004306 ORTHO05D005055 1.6e-16 89.4 71 59.2
Nitab4.5_0000032g0200 Nicotiana tabacum HOM05D004306 ORTHO05D005055 6.8e-15 84.0 49 73.5
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 6.8e-15 84.0 72 54.2
EL10Ac4g09101 Beta vulgaris HOM05D004306 ORTHO05D005055 1.5e-14 82.8 44 77.3
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.5e-14 82.8 78 57.7
Cfa025028 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.0e-10 70.1 64 46.9
EL10Ac4g09102 Beta vulgaris HOM05D004306 ORTHO05D005055 4.7e-08 61.2 33 72.7


User provided reference genes

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