Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 2.8e-257 891.3 423 100.0
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 2.2e-217 758.8 539 72.9
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 5.9e-215 750.7 464 81.0
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 2.0e-210 735.7 464 78.9
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 3.4e-210 734.9 461 77.4
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 8.3e-209 730.3 459 76.9
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 3.1e-208 728.4 464 76.1
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 3.5e-207 724.9 461 76.6
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 8.6e-206 720.3 463 75.6
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 1.5e-205 719.5 464 75.6
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 1.2e-204 716.5 464 76.1
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 2.1e-204 715.7 464 75.4
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 2.1e-204 715.7 464 75.4
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 2.1e-204 715.7 464 74.6
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 2.1e-204 715.7 462 75.8
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 2.8e-204 715.3 461 75.5
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 3.6e-204 714.9 459 75.4
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 6.1e-204 714.1 462 73.8
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 1.4e-203 713.0 462 75.5
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 1.8e-203 712.6 461 75.5
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 1.2e-202 709.9 463 74.3
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 1.5e-202 709.5 464 74.1
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 2.6e-202 708.8 464 73.1
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 3.4e-202 708.4 462 74.0
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 9.8e-202 706.8 462 75.1
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 9.8e-202 706.8 462 74.7
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 3.7e-201 704.9 462 74.0
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 4.9e-201 704.5 462 74.2
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 4.9e-201 704.5 462 74.9
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 6.4e-201 704.1 464 74.1
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 1.1e-200 703.4 464 74.1
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 1.8e-200 702.6 464 74.8
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 1.8e-200 702.6 483 71.6
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 4.1e-200 701.4 464 73.1
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 5.4e-200 701.0 464 73.7
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 7.0e-200 700.7 459 74.7
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 7.0e-200 700.7 462 73.8
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 7.0e-200 700.7 464 73.5
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 9.2e-200 700.3 464 73.1
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 2.7e-199 698.7 462 73.4
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 2.7e-199 698.7 464 73.5
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 3.5e-199 698.4 462 73.4
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 3.5e-199 698.4 459 73.4
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 7.8e-199 697.2 459 73.6
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 1.7e-198 696.0 464 73.1
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 2.3e-198 695.7 461 73.5
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 3.0e-198 695.3 464 73.7
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 3.0e-198 695.3 462 73.8
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 5.0e-198 694.5 461 73.3
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 5.0e-198 694.5 459 73.9
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 5.0e-198 694.5 460 72.6
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 1.9e-197 692.6 464 72.4
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 2.5e-197 692.2 464 72.4
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 4.3e-197 691.4 457 73.1
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 1.2e-196 689.9 461 73.5
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 1.6e-196 689.5 459 72.8
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 2.1e-196 689.1 464 72.8
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 1.1e-195 686.8 460 72.6
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 1.1e-195 686.8 464 72.4
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 1.4e-195 686.4 459 72.3
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 4.0e-195 684.9 462 73.4
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 2.0e-194 682.6 464 71.3
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 2.6e-194 682.2 463 72.1
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 4.4e-194 681.4 483 70.0
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 7.5e-194 680.6 463 71.5
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 9.8e-194 680.2 463 71.7
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 3.7e-193 678.3 464 71.6
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 3.7e-193 678.3 464 71.6
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 1.4e-192 676.4 464 72.0
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 1.4e-192 676.4 457 71.8
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 5.4e-192 674.5 464 71.6
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 1.2e-191 673.3 464 70.7
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 1.6e-191 672.9 464 70.7
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 1.6e-191 672.9 464 70.7
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 2.0e-191 672.5 464 70.7
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 2.7e-191 672.2 432 75.7
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 4.6e-191 671.4 464 70.7
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 6.0e-191 671.0 464 70.5
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 6.0e-191 671.0 462 69.7
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 7.8e-191 670.6 464 70.3
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 7.8e-191 670.6 463 70.4
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 1.0e-190 670.2 464 70.7
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 2.3e-190 669.1 462 72.3
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 2.3e-190 669.1 464 70.0
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 3.0e-190 668.7 464 70.9
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 3.9e-190 668.3 463 70.4
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 6.6e-190 667.5 458 71.2
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 6.6e-190 667.5 460 69.8
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 6.6e-190 667.5 460 70.2
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 1.5e-189 666.4 462 70.1
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 2.5e-189 665.6 507 66.1
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 4.3e-189 664.8 463 71.1
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 4.3e-189 664.8 464 69.8
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 9.5e-189 663.7 459 69.9
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 2.8e-188 662.1 464 69.8
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 6.2e-188 661.0 464 69.4
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 1.1e-187 660.2 464 69.4
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 2.3e-187 659.1 464 69.6
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 3.1e-187 658.7 517 63.6
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 3.1e-187 658.7 462 69.0
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 8.9e-187 657.1 453 69.8
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 5.4e-184 647.9 387 78.6
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 5.4e-184 647.9 463 69.3
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 8.6e-182 640.6 401 76.6
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 1.9e-181 639.4 462 66.5
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 5.6e-181 637.9 458 70.1
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 5.6e-181 637.9 462 66.2
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 7.3e-181 637.5 463 68.0
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 7.3e-181 637.5 459 69.7
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 2.0e-178 629.4 454 69.6
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 1.7e-174 616.3 457 65.9
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 1.5e-173 613.2 387 76.0
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 1.9e-173 612.8 464 66.2
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 3.2e-168 595.5 441 68.0
Psat0ss839g0200 Pisum sativum HOM05D004306 ORTHO05D005055 4.2e-168 595.1 391 74.2
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 4.0e-163 578.6 451 63.0
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 2.4e-160 569.3 456 60.7
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 8.7e-158 560.8 457 59.7
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 5.8e-146 521.5 358 71.2
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 3.8e-145 518.8 454 60.6
Sc16g0000120 Simmondsia chinensis HOM05D004306 ORTHO05D005055 4.2e-144 515.4 345 73.9
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 7.6e-138 494.6 429 58.3
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 9.7e-133 477.6 288 77.4
arahy.Tifrunner.gnm1.ann1.HR4B5C Arachis hypogaea HOM05D004306 ORTHO05D005055 3.4e-122 442.6 309 72.8
Sc16g0000140 Simmondsia chinensis HOM05D004306 ORTHO05D005055 1.9e-120 436.8 306 71.2
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 1.6e-114 417.2 470 52.6
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 1.0e-113 414.5 411 53.0
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 5.0e-113 412.1 310 64.2
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 1.7e-105 387.1 466 50.0
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 1.6e-98 364.0 449 46.1
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 1.0e-89 334.7 199 76.4
EL10Ac5g12500 Beta vulgaris HOM05D004306 ORTHO05D005055 5.6e-64 249.2 147 80.3
Cfa025028 Carpinus fangiana HOM05D004306 ORTHO05D005055 6.2e-63 245.7 266 47.7
EL10Ac1g01850 Beta vulgaris HOM05D004306 ORTHO05D005055 8.1e-63 245.4 150 73.3
Sc16g0000130 Simmondsia chinensis HOM05D004306 ORTHO05D005055 1.3e-60 238.0 153 69.9
arahy.Tifrunner.gnm1.ann1.ZW9ABU Arachis hypogaea HOM05D004306 ORTHO05D005055 1.6e-58 231.1 153 69.9
SEGI_13173 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 2.5e-56 223.8 194 56.2
DCAR_000330 Daucus carota HOM05D004306 ORTHO05D005055 6.6e-49 199.1 157 63.1
RcHm_v2.0_Chr2g0107621 Rosa chinensis HOM05D004306 ORTHO05D005055 1.1e-48 198.4 138 65.9
COL.COLO4_11551 Corchorus olitorius HOM05D004306 ORTHO05D005055 5.8e-45 186.0 146 66.4
MD00G1015600 Malus domestica HOM05D004306 ORTHO05D005055 3.0e-41 173.7 198 50.0
SEGI_23023 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 2.5e-40 170.6 148 55.4
SEGI_27901 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 4.0e-38 163.3 147 55.8
EL10Ac4g09102 Beta vulgaris HOM05D004306 ORTHO05D005055 7.6e-37 159.1 126 57.9
CDE07G1667 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 3.2e-35 153.7 110 65.5
Cfa004111 Carpinus fangiana HOM05D004306 ORTHO05D005055 3.7e-31 140.2 78 87.2
vmacro05396 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 5.1e-25 119.8 74 75.7
FAN28G1106 Fragaria x ananassa HOM05D004306 ORTHO05D005055 9.7e-24 115.5 73 76.7
ATR0515G001 Amborella trichopoda HOM05D004306 ORTHO05D005055 1.1e-22 112.1 55 90.9
TPR.G23871 Trifolium pratense HOM05D004306 ORTHO05D005055 1.4e-22 111.7 111 54.1
Lj4C160G10 Lonicera japonica HOM05D004306 ORTHO05D005055 3.1e-22 110.5 73 74.0
AUR62003988 Chenopodium quinoa HOM05D004306 ORTHO05D005055 1.1e-19 102.1 70 68.6
SGA_v2.0_scaffold21G09394 Striga asiatica HOM05D004306 ORTHO05D005055 5.5e-19 99.8 66 69.7
Dinv30076 Davidia involucrata HOM05D004306 ORTHO05D005055 1.0e-17 95.5 80 58.8
Psat5g012000 Pisum sativum HOM05D004306 ORTHO05D005055 5.1e-17 93.2 83 54.2
SEGI_03818 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 2.0e-13 81.3 67 55.2
Eucgr.H02294 Eucalyptus grandis HOM05D004306 ORTHO05D005055 1.9e-11 74.7 71 53.5
Nitab4.5_0000032g0200 Nicotiana tabacum HOM05D004306 ORTHO05D005055 7.2e-11 72.8 49 65.3
Cc07_g06910 Coffea canephora HOM05D004306 ORTHO05D005055 2.7e-10 70.9 55 60.0
Thecc.01G069900 Theobroma cacao HOM05D004306 ORTHO05D005055 5.1e-09 66.6 36 80.6
EL10Ac4g09101 Beta vulgaris HOM05D004306 ORTHO05D005055 4.4e-08 63.5 44 65.9


User provided reference genes

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