Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004103 Carpinus fangiana HOM05D004985 ORTHO05D005912 9.8e-80 300.1 150 100.0
Haze_07724 Corylus avellana HOM05D004985 ORTHO05D005912 3.3e-43 178.7 154 67.5
Haze_18480 Corylus avellana HOM05D004985 ORTHO05D005912 1.2e-37 160.2 148 64.2
CiPaw.11G053300 Carya illinoinensis HOM05D004985 ORTHO05D005912 2.7e-37 159.1 154 61.7
QL10p019503 Quercus lobata HOM05D004985 ORTHO05D005912 6.0e-37 157.9 154 61.7
Ciclev10021430m.g Citrus clementina HOM05D004985 ORTHO05D005912 5.5e-30 134.8 154 53.2
Duzib205G0214 Durio zibethinus HOM05D004985 ORTHO05D005912 7.1e-30 134.4 154 53.9
Atru.chr9.579 Acer truncatum HOM05D004985 ORTHO05D005912 9.3e-30 134.0 150 55.3
CSS0016421 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 1.6e-29 133.3 154 50.0
CSS0040501 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 1.6e-29 133.3 154 50.0
Gohir.A07G068600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 4.6e-29 131.7 155 52.3
Thecc.03G101800 Theobroma cacao HOM05D004985 ORTHO05D005912 7.9e-29 131.0 154 51.9
Gohir.D07G073100 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.3e-28 130.2 155 51.6
Gorai.001G077300 Gossypium raimondii HOM05D004985 ORTHO05D005912 3.0e-28 129.0 155 51.0
Manes.14G085700 Manihot esculenta HOM05D004985 ORTHO05D005912 3.0e-28 129.0 154 51.9
COL.COLO4_06857 Corchorus olitorius HOM05D004985 ORTHO05D005912 3.9e-28 128.6 154 50.6
Cc09_g09310 Coffea canephora HOM05D004985 ORTHO05D005912 8.7e-28 127.5 154 51.3
FAN13G1687 Fragaria x ananassa HOM05D004985 ORTHO05D005912 1.5e-27 126.7 160 51.9
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 1.9e-27 126.3 164 46.3
Dinv22782 Davidia involucrata HOM05D004985 ORTHO05D005912 1.9e-27 126.3 154 50.6
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 2.5e-27 125.9 155 49.0
Oeu014411.1 Olea europaea HOM05D004985 ORTHO05D005912 3.3e-27 125.6 157 49.7
TAR374G0278 Trochodendron aralioides HOM05D004985 ORTHO05D005912 4.3e-27 125.2 154 49.4
Hma1.2p1_0060F.1_g033100 Hydrangea macrophylla HOM05D004985 ORTHO05D005912 5.6e-27 124.8 154 50.0
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 9.6e-27 124.0 154 48.7
FAN18G1860 Fragaria x ananassa HOM05D004985 ORTHO05D005912 9.6e-27 124.0 160 50.6
Potri.012G066200 Populus trichocarpa HOM05D004985 ORTHO05D005912 9.6e-27 124.0 154 48.7
SGA_v2.0_scaffold1066G53824 Striga asiatica HOM05D004985 ORTHO05D005912 1.3e-26 123.6 161 46.6
MSTRG.9599 Avicennia marina HOM05D004985 ORTHO05D005912 2.1e-26 122.9 161 47.2
FvH4_5g13840 Fragaria vesca HOM05D004985 ORTHO05D005912 2.1e-26 122.9 160 50.6
Prupe.5G205100 Prunus persica HOM05D004985 ORTHO05D005912 2.1e-26 122.9 157 50.3
Oeu042721.3 Olea europaea HOM05D004985 ORTHO05D005912 2.8e-26 122.5 132 53.0
Rhsim08G0146000 Rhododendron simsii HOM05D004985 ORTHO05D005912 2.8e-26 122.5 157 47.8
Sabra12G0048600 Salix brachista HOM05D004985 ORTHO05D005912 2.8e-26 122.5 150 50.7
vmacro17610 Vaccinium macrocarpon HOM05D004985 ORTHO05D005912 3.7e-26 122.1 157 47.1
TWI31G1299 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 6.2e-26 121.3 154 50.0
RcHm_v2.0_Chr7g0183091 Rosa chinensis HOM05D004985 ORTHO05D005912 8.2e-26 120.9 156 50.6
GSVIVG01007867001 Vitis vinifera HOM05D004985 ORTHO05D005912 8.2e-26 120.9 155 49.7
Cpa.g.sc94.56 Carica papaya HOM05D004985 ORTHO05D005912 1.8e-25 119.8 156 51.9
Migut.D01657 Erythranthe guttata HOM05D004985 ORTHO05D005912 3.1e-25 119.0 157 46.5
PGSC0003DMG400030337 Solanum tuberosum HOM05D004985 ORTHO05D005912 4.0e-25 118.6 155 47.7
FAN08G1159 Fragaria x ananassa HOM05D004985 ORTHO05D005912 5.3e-25 118.2 160 50.6
PSO017G5703 Papaver somniferum HOM05D004985 ORTHO05D005912 6.9e-25 117.9 154 49.4
ClCG06G015640 Citrullus lanatus HOM05D004985 ORTHO05D005912 2.6e-24 115.9 154 44.8
Eucgr.K02531 Eucalyptus grandis HOM05D004985 ORTHO05D005912 2.6e-24 115.9 162 46.9
Sp1g16610 Schrenkiella parvula HOM05D004985 ORTHO05D005912 2.6e-24 115.9 162 43.2
CsaV3_1G002920 Cucumis sativus L. HOM05D004985 ORTHO05D005912 3.4e-24 115.5 158 44.3
Nitab4.5_0004739g0030 Nicotiana tabacum HOM05D004985 ORTHO05D005912 3.4e-24 115.5 154 48.1
PSO478G5014 Papaver somniferum HOM05D004985 ORTHO05D005912 4.5e-24 115.2 154 49.4
MELO3C017224.2 Cucumis melo HOM05D004985 ORTHO05D005912 5.8e-24 114.8 155 43.9
A06p14760 Brassica napus HOM05D004985 ORTHO05D005912 1.0e-23 114.0 157 43.9
Thhalv10008334m.g Eutrema salsugineum HOM05D004985 ORTHO05D005912 1.7e-23 113.2 159 42.8
Hund02586 Selenicereus undatus HOM05D004985 ORTHO05D005912 1.7e-23 113.2 161 44.7
BcaC07g38933 Brassica carinata HOM05D004985 ORTHO05D005912 2.2e-23 112.8 156 43.6
BolC8t49507H Brassica oleracea HOM05D004985 ORTHO05D005912 2.2e-23 112.8 156 43.6
AUR62021560 Chenopodium quinoa HOM05D004985 ORTHO05D005912 2.9e-23 112.5 132 53.0
Manes.06G084800 Manihot esculenta HOM05D004985 ORTHO05D005912 2.9e-23 112.5 111 57.7
BcaB07g31884 Brassica carinata HOM05D004985 ORTHO05D005912 3.8e-23 112.1 155 45.8
Carub.0001s1827 Capsella rubella HOM05D004985 ORTHO05D005912 3.8e-23 112.1 159 43.4
Sopen06g032910 Solanum pennellii HOM05D004985 ORTHO05D005912 3.8e-23 112.1 155 46.5
AT1G18640 Arabidopsis thaliana HOM05D004985 ORTHO05D005912 4.9e-23 111.7 156 44.9
BraA06t24599Z Brassica rapa HOM05D004985 ORTHO05D005912 4.9e-23 111.7 157 43.3
CAN.G394.86 Capsicum annuum HOM05D004985 ORTHO05D005912 6.5e-23 111.3 157 45.9
Nitab4.5_0000116g0440 Nicotiana tabacum HOM05D004985 ORTHO05D005912 6.5e-23 111.3 154 46.8
SGA_v2.0_scaffold42G16037 Striga asiatica HOM05D004985 ORTHO05D005912 6.5e-23 111.3 157 44.6
AL1G31080 Arabidopsis lyrata HOM05D004985 ORTHO05D005912 8.4e-23 110.9 157 45.2
AUR62008533 Chenopodium quinoa HOM05D004985 ORTHO05D005912 8.4e-23 110.9 155 46.5
Solyc06g076510.3 Solanum lycopersicum HOM05D004985 ORTHO05D005912 1.1e-22 110.5 155 45.8
Aa31LG7G3400 Aethionema arabicum HOM05D004985 ORTHO05D005912 1.4e-22 110.2 154 45.5
THA.LOC104812106 Tarenaya hassleriana HOM05D004985 ORTHO05D005912 1.4e-22 110.2 154 47.4
C08p18810 Brassica napus HOM05D004985 ORTHO05D005912 1.9e-22 109.8 156 42.9
Peaxi162Scf00481g00631 Petunia axillaris HOM05D004985 ORTHO05D005912 1.9e-22 109.8 146 47.3
Sed0020095 Sechium edule HOM05D004985 ORTHO05D005912 1.9e-22 109.8 154 43.5
ECA232G4926 Erigeron canadensis HOM05D004985 ORTHO05D005912 2.5e-22 109.4 154 45.5
SalBow4G0956 Salvia bowleyana HOM05D004985 ORTHO05D005912 2.5e-22 109.4 157 45.2
TAR622G1020 Trochodendron aralioides HOM05D004985 ORTHO05D005912 2.5e-22 109.4 150 48.0
arahy.Tifrunner.gnm1.ann1.B21894 Arachis hypogaea HOM05D004985 ORTHO05D005912 3.2e-22 109.0 164 43.9
arahy.Tifrunner.gnm1.ann1.XT1KNI Arachis hypogaea HOM05D004985 ORTHO05D005912 3.2e-22 109.0 164 43.9
CANSAT35G1156 Cannabis sativa HOM05D004985 ORTHO05D005912 3.2e-22 109.0 157 50.3
Carub.0007s3048 Capsella rubella HOM05D004985 ORTHO05D005912 3.2e-22 109.0 159 43.4
Nitab4.5_0000744g0020 Nicotiana tabacum HOM05D004985 ORTHO05D005912 4.2e-22 108.6 155 45.2
HPP92_012184 Vanilla planifolia HOM05D004985 ORTHO05D005912 4.2e-22 108.6 152 42.8
BcaC05g25759 Brassica carinata HOM05D004985 ORTHO05D005912 7.1e-22 107.8 157 43.9
C05p16910 Brassica napus HOM05D004985 ORTHO05D005912 7.1e-22 107.8 157 43.9
BolC5t30393H Brassica oleracea HOM05D004985 ORTHO05D005912 7.1e-22 107.8 157 43.9
MD14G1211600 Malus domestica HOM05D004985 ORTHO05D005912 7.1e-22 107.8 113 58.4
Glyma.04G162700 Glycine max HOM05D004985 ORTHO05D005912 9.3e-22 107.5 156 50.6
Lsat_1_v5_gn_2_122560 Lactuca sativa HOM05D004985 ORTHO05D005912 9.3e-22 107.5 151 49.0
Nn3g17450 Nelumbo nucifera HOM05D004985 ORTHO05D005912 1.2e-21 107.1 160 45.6
Nn4g23424 Nelumbo nucifera HOM05D004985 ORTHO05D005912 1.2e-21 107.1 160 43.8
MSTRG.15338 Avicennia marina HOM05D004985 ORTHO05D005912 1.6e-21 106.7 161 46.0
Aqoxy3G03694 Aquilegia oxysepala HOM05D004985 ORTHO05D005912 4.6e-21 105.1 158 45.6
Duzib084G0347 Durio zibethinus HOM05D004985 ORTHO05D005912 7.9e-21 104.4 132 48.5
MD06G1202500 Malus domestica HOM05D004985 ORTHO05D005912 1.0e-20 104.0 113 55.8
PGR044G1445 Punica granatum HOM05D004985 ORTHO05D005912 1.0e-20 104.0 150 44.0
VMungo0331G0044 Vigna mungo HOM05D004985 ORTHO05D005912 3.0e-20 102.4 159 47.8
A08p30280 Brassica napus HOM05D004985 ORTHO05D005912 3.9e-20 102.1 156 42.3
CARHR019270 Cardamine hirsuta HOM05D004985 ORTHO05D005912 3.9e-20 102.1 163 43.6
Lj1g0027941 Lotus japonicus HOM05D004985 ORTHO05D005912 3.9e-20 102.1 153 44.4
MBI19_g00634_MAGBIO Magnolia biondii HOM05D004985 ORTHO05D005912 3.9e-20 102.1 59 84.7
TPR.G12221 Trifolium pratense HOM05D004985 ORTHO05D005912 5.1e-20 101.7 155 45.2
Ca_14341_v3 Cicer arietinum L. HOM05D004985 ORTHO05D005912 6.7e-20 101.3 160 45.0
Phvul.010G007300 Phaseolus vulgaris HOM05D004985 ORTHO05D005912 6.7e-20 101.3 159 46.5
Glyma.06G203300 Glycine max HOM05D004985 ORTHO05D005912 8.7e-20 100.9 112 57.1
Lj1g0020192 Lotus japonicus HOM05D004985 ORTHO05D005912 8.7e-20 100.9 156 44.2
Medtr3g025840 Medicago truncatula HOM05D004985 ORTHO05D005912 1.9e-19 99.8 59 81.4
Sed0001113 Sechium edule HOM05D004985 ORTHO05D005912 3.3e-19 99.0 154 41.6
HanXRQChr09g0270221 Helianthus annuus HOM05D004985 ORTHO05D005912 4.3e-19 98.6 105 56.2
DCAR_029981 Daucus carota HOM05D004985 ORTHO05D005912 5.7e-19 98.2 155 45.2
Psat5g208200 Pisum sativum HOM05D004985 ORTHO05D005912 5.7e-19 98.2 59 79.7
SEGI_10948 Sequoiadendron giganteum HOM05D004985 ORTHO05D005912 1.3e-18 97.1 121 46.3
TWI79G1560 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 1.3e-18 97.1 59 79.7
TPR.G28540 Trifolium pratense HOM05D004985 ORTHO05D005912 1.6e-18 96.7 118 52.5
BraA08t34961Z Brassica rapa HOM05D004985 ORTHO05D005912 2.2e-18 96.3 59 78.0
CDE06G0240 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 2.8e-18 95.9 59 78.0
EL10Ac8g18666 Beta vulgaris HOM05D004985 ORTHO05D005912 4.8e-18 95.1 59 78.0
Sc10g0009710 Simmondsia chinensis HOM05D004985 ORTHO05D005912 8.2e-18 94.4 134 44.8
unitig_60.g25411 Utricularia gibba HOM05D004985 ORTHO05D005912 4.1e-17 92.0 59 72.9
Os12g0502400 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 1.2e-16 90.5 59 71.2
Peaxi162Scf00086g01110 Petunia axillaris HOM05D004985 ORTHO05D005912 1.2e-16 90.5 147 43.5
AUR62008530 Chenopodium quinoa HOM05D004985 ORTHO05D005912 2.0e-16 89.7 156 40.4
Os11g0629500 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 2.6e-16 89.4 59 71.2
Zm00001eb166440 Zea mays HOM05D004985 ORTHO05D005912 2.6e-16 89.4 162 42.0
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 7.6e-16 87.8 60 71.7
Lalb_Chr12g0197201 Lupinus albus HOM05D004985 ORTHO05D005912 1.0e-15 87.4 59 72.9
AagrBONN_evm.TU.Sc2ySwM_228.2773 Anthoceros agrestis HOM05D004985 ORTHO05D005912 1.7e-15 86.7 60 70.0
ATR0681G325 Amborella trichopoda HOM05D004985 ORTHO05D005912 3.8e-15 85.5 60 66.7
Pp3c8_16890 Physcomitrium patens HOM05D004985 ORTHO05D005912 6.5e-15 84.7 60 68.3
Mapoly0023s0019 Marchantia polymorpha HOM05D004985 ORTHO05D005912 1.1e-14 84.0 75 60.0
SMO137G0315 Selaginella moellendorffii HOM05D004985 ORTHO05D005912 3.6e-13 79.0 57 63.2
PRCOL_00003809 Prasinoderma coloniale HOM05D004985 ORTHO05D005912 3.0e-12 75.9 60 61.7
Cc11_g04830 Coffea canephora HOM05D004985 ORTHO05D005912 8.8e-12 74.3 113 45.1
MCO16G297 Micromonas commoda HOM05D004985 ORTHO05D005912 2.2e-07 59.7 55 54.5


User provided reference genes

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