Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004094 Carpinus fangiana HOM05D005407 ORTHO05D006544 2.5e-166 589.0 356 100.0
Haze_15320 Corylus avellana HOM05D005407 ORTHO05D006544 1.0e-151 540.4 356 89.6
CiPaw.02G004700 Carya illinoinensis HOM05D005407 ORTHO05D006544 7.2e-89 331.6 375 58.4
QL06p039956 Quercus lobata HOM05D005407 ORTHO05D006544 5.0e-82 308.9 361 57.6
CiPaw.01G007800 Carya illinoinensis HOM05D005407 ORTHO05D006544 3.5e-75 286.2 358 49.7
Dinv26896 Davidia involucrata HOM05D005407 ORTHO05D006544 6.8e-47 192.2 362 38.1
Cpa.g.sc6.55 Carica papaya HOM05D005407 ORTHO05D006544 2.0e-46 190.7 335 43.9
Potri.007G051800 Populus trichocarpa HOM05D005407 ORTHO05D006544 2.0e-46 190.7 389 42.9
Duzib187G0216 Durio zibethinus HOM05D005407 ORTHO05D006544 3.2e-44 183.3 394 43.4
Potri.005G145100 Populus trichocarpa HOM05D005407 ORTHO05D006544 2.1e-43 180.6 384 39.3
Sabra07G0045500 Salix brachista HOM05D005407 ORTHO05D006544 2.3e-42 177.2 384 41.7
GSVIVG01000158001 Vitis vinifera HOM05D005407 ORTHO05D006544 2.3e-42 177.2 357 38.9
Duzib264G0474 Durio zibethinus HOM05D005407 ORTHO05D006544 1.5e-41 174.5 368 39.9
TAR628G1677 Trochodendron aralioides HOM05D005407 ORTHO05D006544 4.3e-41 172.9 357 40.3
Manes.13G114000 Manihot esculenta HOM05D005407 ORTHO05D006544 7.3e-41 172.2 373 40.8
Glyma.11G050800 Glycine max HOM05D005407 ORTHO05D006544 4.7e-40 169.5 362 40.6
Sabra05G0114800 Salix brachista HOM05D005407 ORTHO05D006544 5.2e-39 166.0 323 44.0
Sabra05G0115900 Salix brachista HOM05D005407 ORTHO05D006544 5.2e-39 166.0 323 44.0
Gohir.A02G153500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.5e-38 164.5 349 44.7
Ciclev10025829m.g Citrus clementina HOM05D005407 ORTHO05D006544 2.6e-38 163.7 383 36.6
Gohir.A11G217700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 4.4e-38 162.9 350 39.4
Nn5g30501 Nelumbo nucifera HOM05D005407 ORTHO05D006544 4.4e-38 162.9 365 36.4
Gorai.003G028600 Gossypium raimondii HOM05D005407 ORTHO05D006544 1.3e-37 161.4 347 48.4
Gohir.A12G074500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 2.2e-37 160.6 371 39.9
Gohir.D11G205800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 3.8e-37 159.8 351 38.7
Gohir.D03G026900 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.4e-36 157.9 347 47.8
Gorai.007G220900 Gossypium raimondii HOM05D005407 ORTHO05D006544 1.4e-36 157.9 351 37.6
Gorai.008G080000 Gossypium raimondii HOM05D005407 ORTHO05D006544 4.6e-35 152.9 370 39.2
Thecc.01G067900 Theobroma cacao HOM05D005407 ORTHO05D006544 6.0e-35 152.5 393 34.1
Duzib147G1232 Durio zibethinus HOM05D005407 ORTHO05D006544 6.6e-34 149.1 386 37.0
Gohir.D12G072700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 9.6e-33 145.2 351 40.2
Lj4g0004383 Lotus japonicus HOM05D005407 ORTHO05D006544 1.3e-32 144.8 351 40.5
Glyma.05G103000 Glycine max HOM05D005407 ORTHO05D006544 3.6e-32 143.3 363 37.5
TPR.G23890 Trifolium pratense HOM05D005407 ORTHO05D006544 1.1e-31 141.7 356 38.8
Actinidia21238 Actinidia chinensis HOM05D005407 ORTHO05D006544 6.9e-31 139.0 348 38.5
Glyma.01G191400 Glycine max HOM05D005407 ORTHO05D006544 1.2e-30 138.3 332 38.3
Nn1g04631 Nelumbo nucifera HOM05D005407 ORTHO05D006544 1.2e-30 138.3 338 34.3
ClCG01G017290 Citrullus lanatus HOM05D005407 ORTHO05D006544 1.5e-30 137.9 375 37.3
Eucgr.I00726 Eucalyptus grandis HOM05D005407 ORTHO05D006544 2.6e-30 137.1 368 37.8
Prupe.6G224800 Prunus persica HOM05D005407 ORTHO05D006544 3.4e-30 136.7 360 47.2
VMungo1215G1030 Vigna mungo HOM05D005407 ORTHO05D006544 4.5e-30 136.3 326 39.0
FAN19G1545 Fragaria x ananassa HOM05D005407 ORTHO05D006544 7.6e-30 135.6 357 38.7
FAN26G3453 Fragaria x ananassa HOM05D005407 ORTHO05D006544 7.6e-30 135.6 357 38.7
FvH4_1g17130 Fragaria vesca HOM05D005407 ORTHO05D006544 9.9e-30 135.2 357 38.7
Nitab4.5_0003878g0070 Nicotiana tabacum HOM05D005407 ORTHO05D006544 1.3e-29 134.8 323 37.5
MSTRG.2839 Avicennia marina HOM05D005407 ORTHO05D006544 1.7e-29 134.4 368 33.4
Psat4g083080 Pisum sativum HOM05D005407 ORTHO05D006544 1.7e-29 134.4 348 39.9
Lj2g0008966 Lotus japonicus HOM05D005407 ORTHO05D006544 3.8e-29 133.3 352 31.0
Phvul.002G013600 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 3.8e-29 133.3 344 38.7
Nitab4.5_0007941g0010 Nicotiana tabacum HOM05D005407 ORTHO05D006544 4.9e-29 132.9 326 36.8
MD02G1181700 Malus domestica HOM05D005407 ORTHO05D006544 6.4e-29 132.5 370 39.7
MD15G1292600 Malus domestica HOM05D005407 ORTHO05D006544 7.1e-28 129.0 369 37.4
FAN23G2725 Fragaria x ananassa HOM05D005407 ORTHO05D006544 2.7e-27 127.1 360 38.1
TWI09G0600 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 4.6e-27 126.3 283 38.5
Oeu040602.1 Olea europaea HOM05D005407 ORTHO05D006544 7.9e-27 125.6 324 35.8
Manes.12G112400 Manihot esculenta HOM05D005407 ORTHO05D006544 1.3e-26 124.8 344 40.1
Glyma.17G164300 Glycine max HOM05D005407 ORTHO05D006544 1.8e-26 124.4 377 35.5
Dinv30062 Davidia involucrata HOM05D005407 ORTHO05D006544 2.3e-26 124.0 275 41.5
Gorai.011G107400 Gossypium raimondii HOM05D005407 ORTHO05D006544 2.3e-26 124.0 274 36.1
Medtr4g095320 Medicago truncatula HOM05D005407 ORTHO05D006544 3.0e-26 123.6 362 40.9
VMungo1011G0001 Vigna mungo HOM05D005407 ORTHO05D006544 5.1e-26 122.9 344 38.7
PSO675G4008 Papaver somniferum HOM05D005407 ORTHO05D006544 6.7e-26 122.5 300 41.3
SGA_v2.0_scaffold15G07407 Striga asiatica HOM05D005407 ORTHO05D006544 6.7e-26 122.5 361 33.8
arahy.Tifrunner.gnm1.ann1.UV71K9 Arachis hypogaea HOM05D005407 ORTHO05D006544 8.7e-26 122.1 300 37.3
CANSAT01G3084 Cannabis sativa HOM05D005407 ORTHO05D006544 1.9e-25 120.9 372 32.0
arahy.Tifrunner.gnm1.ann1.IRX7P6 Arachis hypogaea HOM05D005407 ORTHO05D006544 3.3e-25 120.2 300 36.7
CsaV3_6G043820 Cucumis sativus L. HOM05D005407 ORTHO05D006544 7.4e-25 119.0 351 31.6
Gohir.A10G090300 Gossypium hirsutum HOM05D005407 ORTHO05D006544 7.4e-25 119.0 276 35.9
Gohir.D10G097800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.3e-24 118.2 273 34.8
PSO541G0358 Papaver somniferum HOM05D005407 ORTHO05D006544 1.3e-24 118.2 297 40.7
PGR004G2820 Punica granatum HOM05D005407 ORTHO05D006544 1.3e-24 118.2 346 38.7
DCAR_021471 Daucus carota HOM05D005407 ORTHO05D006544 2.1e-24 117.5 380 31.3
Sed0008783 Sechium edule HOM05D005407 ORTHO05D006544 2.1e-24 117.5 362 34.0
MSTRG.23698 Avicennia marina HOM05D005407 ORTHO05D006544 6.2e-24 115.9 367 31.6
MELO3C007607.2 Cucumis melo HOM05D005407 ORTHO05D006544 6.2e-24 115.9 356 35.4
CAN.G1075.9 Capsicum annuum HOM05D005407 ORTHO05D006544 1.1e-23 115.2 324 32.1
Solyc02g092720.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 1.4e-23 114.8 324 31.8
Aqoxy6G02765 Aquilegia oxysepala HOM05D005407 ORTHO05D006544 2.4e-23 114.0 198 42.9
TWI53G1118 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 3.1e-23 113.6 355 33.0
RcHm_v2.0_Chr2g0107301 Rosa chinensis HOM05D005407 ORTHO05D006544 4.0e-23 113.2 357 33.3
Sopen02g037270 Solanum pennellii HOM05D005407 ORTHO05D006544 1.5e-22 111.3 327 30.3
PGSC0003DMG400024943 Solanum tuberosum HOM05D005407 ORTHO05D006544 3.4e-22 110.2 319 31.3
Actinidia32821 Actinidia chinensis HOM05D005407 ORTHO05D006544 4.5e-22 109.8 196 43.4
Cc07_g06740 Coffea canephora HOM05D005407 ORTHO05D006544 2.9e-21 107.1 342 34.5
Phvul.003G237500 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 1.4e-20 104.8 347 41.2
FAN28G2899 Fragaria x ananassa HOM05D005407 ORTHO05D006544 1.9e-20 104.4 305 36.7
MSTRG.3457 Avicennia marina HOM05D005407 ORTHO05D006544 3.2e-20 103.6 331 31.7
THA.LOC104827519 Tarenaya hassleriana HOM05D005407 ORTHO05D006544 3.2e-20 103.6 354 37.6
Lsat_1_v5_gn_4_162000 Lactuca sativa HOM05D005407 ORTHO05D006544 9.3e-20 102.1 354 29.9
Lalb_Chr16g0389101 Lupinus albus HOM05D005407 ORTHO05D006544 1.2e-19 101.7 280 33.2
EL10Ac6g15663 Beta vulgaris HOM05D005407 ORTHO05D006544 4.6e-19 99.8 253 41.5
SalBow1G5175 Salvia bowleyana HOM05D005407 ORTHO05D006544 6.0e-19 99.4 229 38.0
Atru.chr3.207 Acer truncatum HOM05D005407 ORTHO05D006544 3.9e-18 96.7 303 42.9
HanXRQChr12g0373231 Helianthus annuus HOM05D005407 ORTHO05D006544 2.5e-17 94.0 373 30.0
Lsat_1_v5_gn_3_87740 Lactuca sativa HOM05D005407 ORTHO05D006544 8.1e-16 89.0 236 31.4
BcaC04g19788 Brassica carinata HOM05D005407 ORTHO05D006544 2.4e-15 87.4 217 37.3
C09p51650 Brassica napus HOM05D005407 ORTHO05D006544 2.4e-15 87.4 217 37.3
BolC9t58026H Brassica oleracea HOM05D005407 ORTHO05D006544 2.4e-15 87.4 217 37.3
unitig_62.g23420 Utricularia gibba HOM05D005407 ORTHO05D006544 6.9e-15 85.9 236 33.9
AL8G43980 Arabidopsis lyrata HOM05D005407 ORTHO05D006544 9.0e-15 85.5 217 35.9
CSS0012811 Camellia sinensis var. sinensis HOM05D005407 ORTHO05D006544 9.0e-15 85.5 256 35.2
A09p09420 Brassica napus HOM05D005407 ORTHO05D006544 1.5e-14 84.7 213 37.1
Peaxi162Scf00264g00321 Petunia axillaris HOM05D005407 ORTHO05D006544 2.6e-14 84.0 334 34.7
AT5G67350 Arabidopsis thaliana HOM05D005407 ORTHO05D006544 5.8e-14 82.8 215 35.8
Carub.0008s2714 Capsella rubella HOM05D005407 ORTHO05D006544 5.8e-14 82.8 202 35.6
C09p11100 Brassica napus HOM05D005407 ORTHO05D006544 7.6e-14 82.4 224 35.3
BraA09t36591Z Brassica rapa HOM05D005407 ORTHO05D006544 1.0e-13 82.0 228 36.0
BolC9t53999H Brassica oleracea HOM05D005407 ORTHO05D006544 1.7e-13 81.3 224 35.3
BcaC04g23209 Brassica carinata HOM05D005407 ORTHO05D006544 1.1e-12 78.6 219 34.7
TAR376G1145 Trochodendron aralioides HOM05D005407 ORTHO05D006544 1.9e-12 77.8 250 36.8
CDE04G2817 Ceratophyllum demersum HOM05D005407 ORTHO05D006544 2.5e-12 77.4 209 31.1
CARHR280260 Cardamine hirsuta HOM05D005407 ORTHO05D006544 3.2e-12 77.0 251 33.9
Oeu054177.1 Olea europaea HOM05D005407 ORTHO05D006544 9.3e-12 75.5 173 39.9
Peaxi162Scf00365g00076 Petunia axillaris HOM05D005407 ORTHO05D006544 9.3e-12 75.5 254 29.5
Solyc03g150114.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 1.2e-11 75.1 220 31.4
Aa31LG1G15900 Aethionema arabicum HOM05D005407 ORTHO05D006544 1.6e-11 74.7 288 31.9
Sp2g29310 Schrenkiella parvula HOM05D005407 ORTHO05D006544 1.6e-11 74.7 216 35.2
Rhsim08G0096100 Rhododendron simsii HOM05D005407 ORTHO05D006544 2.1e-11 74.3 276 35.9
Migut.H00374 Erythranthe guttata HOM05D005407 ORTHO05D006544 2.7e-11 73.9 330 32.1
vmacro17985 Vaccinium macrocarpon HOM05D005407 ORTHO05D006544 4.6e-11 73.2 141 39.7
Thhalv10005384m.g Eutrema salsugineum HOM05D005407 ORTHO05D006544 7.9e-11 72.4 215 33.5
BcaB04g20064 Brassica carinata HOM05D005407 ORTHO05D006544 1.8e-10 71.2 212 34.4
CDE07G1425 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 3.0e-10 70.5 197 33.0
BolC7t42952H Brassica oleracea HOM05D005407 ORTHO05D006544 5.1e-10 69.7 218 33.9
unitig_52.g17607 Utricularia gibba HOM05D005407 ORTHO05D006544 8.7e-10 68.9 233 29.6
SGA_v2.0_scaffold143G35780 Striga asiatica HOM05D005407 ORTHO05D006544 1.5e-09 68.2 251 32.7
A07p16540 Brassica napus HOM05D005407 ORTHO05D006544 1.9e-09 67.8 213 34.3
BraA07t29378Z Brassica rapa HOM05D005407 ORTHO05D006544 1.9e-09 67.8 213 34.3
Sed0011473 Sechium edule HOM05D005407 ORTHO05D006544 2.5e-09 67.4 208 39.4
SEGI_05722 Sequoiadendron giganteum HOM05D019616 ORTHO05D023140 8.2e-08 62.4 319 28.2
HPP92_007853 Vanilla planifolia HOM05D005407 ORTHO05D006544 1.2e-06 58.5 216 27.8
MELO3C020864.2 Cucumis melo HOM05D005407 ORTHO05D006544 1.5e-06 58.2 192 37.5
CsaV3_2G016540 Cucumis sativus L. HOM05D005407 ORTHO05D006544 1.5e-06 58.2 192 38.0
unitig_899.g14576 Utricularia gibba HOM05D005407 ORTHO05D006544 1.5e-06 58.2 201 34.8
Nitab4.5_0005127g0050 Nicotiana tabacum HOM05D005407 ORTHO05D006544 4.5e-06 56.6 72 47.2
SEGI_38417 Sequoiadendron giganteum HOM05D019616 ORTHO05D023140 4.5e-06 56.6 222 26.1
CDE01G0807 Ceratophyllum demersum HOM05D042405 ORTHO05D043904 7.6e-06 55.8 267 27.7


User provided reference genes

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