Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004061 Carpinus fangiana HOM05D005694 ORTHO05D007402 1.9e-237 825.5 422 100.0
Haze_15351 Corylus avellana HOM05D005694 ORTHO05D007402 1.3e-222 776.2 422 94.1
Prupe.6G229100 Prunus persica HOM05D005694 ORTHO05D007402 1.1e-179 633.6 417 77.7
CiPaw.01G012900 Carya illinoinensis HOM05D005694 ORTHO05D007402 7.5e-178 627.5 423 76.8
QL06p040237 Quercus lobata HOM05D005694 ORTHO05D007402 2.7e-175 619.0 425 76.9
RcHm_v2.0_Chr2g0106661 Rosa chinensis HOM05D005694 ORTHO05D007402 6.2e-172 607.8 413 76.3
FvH4_1g16760 Fragaria vesca HOM05D005694 ORTHO05D007402 1.3e-169 600.1 415 75.4
FAN23G2399 Fragaria x ananassa HOM05D005694 ORTHO05D007402 4.1e-168 595.1 411 74.0
COL.COLO4_11482 Corchorus olitorius HOM05D005694 ORTHO05D007402 9.2e-168 594.0 432 71.1
FAN19G0282 Fragaria x ananassa HOM05D005694 ORTHO05D007402 2.3e-166 589.3 415 74.5
FAN26G1197 Fragaria x ananassa HOM05D005694 ORTHO05D007402 5.1e-166 588.2 415 74.2
Gorai.007G218000 Gossypium raimondii HOM05D005694 ORTHO05D007402 1.5e-165 586.6 400 73.0
Manes.12G108400 Manihot esculenta HOM05D005694 ORTHO05D007402 7.3e-165 584.3 416 72.8
CANSAT25G2140 Cannabis sativa HOM05D005694 ORTHO05D007402 9.6e-165 583.9 425 71.3
ClCG01G017080 Citrullus lanatus HOM05D005694 ORTHO05D007402 1.2e-164 583.6 425 70.6
arahy.Tifrunner.gnm1.ann1.ZT89Y7 Arachis hypogaea HOM05D005694 ORTHO05D007402 3.6e-164 582.0 418 70.6
Thecc.01G063300 Theobroma cacao HOM05D005694 ORTHO05D007402 3.6e-164 582.0 425 70.4
Sabra05G0051000 Salix brachista HOM05D005694 ORTHO05D007402 1.1e-163 580.5 403 72.7
Duzib264G0643 Durio zibethinus HOM05D005694 ORTHO05D007402 1.4e-163 580.1 382 75.4
CANSAT25G0291 Cannabis sativa HOM05D005694 ORTHO05D007402 1.8e-163 579.7 426 70.9
MELO3C007585.2 Cucumis melo HOM05D005694 ORTHO05D007402 6.9e-163 577.8 425 68.9
Gohir.D11G203300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 1.2e-162 577.0 382 74.1
CsaV3_6G043550 Cucumis sativus L. HOM05D005694 ORTHO05D007402 1.5e-162 576.6 422 69.4
Cpa.g.sc6.99 Carica papaya HOM05D005694 ORTHO05D007402 1.9e-160 569.7 406 72.2
Sed0004561 Sechium edule HOM05D005694 ORTHO05D007402 2.4e-160 569.3 423 69.3
Ciclev10025664m.g Citrus clementina HOM05D005694 ORTHO05D007402 7.1e-160 567.8 391 73.4
Potri.005G060500 Populus trichocarpa HOM05D005694 ORTHO05D007402 7.1e-160 567.8 379 74.4
MD02G1178800 Malus domestica HOM05D005694 ORTHO05D007402 2.1e-159 566.2 413 70.7
Glyma.17G167200 Glycine max HOM05D005694 ORTHO05D007402 8.7e-158 560.8 395 71.6
Ca_22124_v3 Cicer arietinum L. HOM05D005694 ORTHO05D007402 2.5e-157 559.3 378 73.8
MSTRG.2849 Avicennia marina HOM05D005694 ORTHO05D007402 4.3e-157 558.5 394 70.3
arahy.Tifrunner.gnm1.ann1.MA1EVV Arachis hypogaea HOM05D005694 ORTHO05D007402 9.6e-157 557.4 485 61.0
Lalb_Chr16g0388811 Lupinus albus HOM05D005694 ORTHO05D007402 6.2e-156 554.7 378 72.2
BcaB06g28844 Brassica carinata HOM05D005694 ORTHO05D007402 1.8e-155 553.1 424 66.7
PGR004G1079 Punica granatum HOM05D005694 ORTHO05D007402 2.4e-155 552.7 423 67.1
Atru.chr3.251 Acer truncatum HOM05D005694 ORTHO05D007402 4.0e-155 552.0 381 72.2
Sopen03g008170 Solanum pennellii HOM05D005694 ORTHO05D007402 5.3e-155 551.6 394 68.5
BcaC05g29844 Brassica carinata HOM05D005694 ORTHO05D007402 1.5e-154 550.1 421 67.0
BolC5t34672H Brassica oleracea HOM05D005694 ORTHO05D007402 1.5e-154 550.1 421 67.0
Lj4g0009127 Lotus japonicus HOM05D005694 ORTHO05D007402 1.5e-154 550.1 377 73.5
EL10Ac6g15690 Beta vulgaris HOM05D005694 ORTHO05D007402 2.0e-154 549.7 396 71.2
TAR625G0317 Trochodendron aralioides HOM05D005694 ORTHO05D007402 2.6e-154 549.3 383 71.8
Solyc03g044190.3 Solanum lycopersicum HOM05D005694 ORTHO05D007402 3.4e-154 548.9 394 68.3
BraA05t22832Z Brassica rapa HOM05D005694 ORTHO05D007402 5.8e-154 548.1 416 67.3
TPR.G23863 Trifolium pratense HOM05D005694 ORTHO05D007402 5.8e-154 548.1 418 67.5
Psat4g084360 Pisum sativum HOM05D005694 ORTHO05D007402 9.9e-154 547.4 417 67.4
CSS0006569 Camellia sinensis var. sinensis HOM05D005694 ORTHO05D007402 1.3e-153 547.0 370 73.8
Medtr4g094962 Medicago truncatula HOM05D005694 ORTHO05D007402 1.3e-153 547.0 399 70.2
THA.LOC104819246 Tarenaya hassleriana HOM05D005694 ORTHO05D007402 2.9e-153 545.8 386 69.7
VMungo0251G0564 Vigna mungo HOM05D005694 ORTHO05D007402 2.9e-153 545.8 397 68.5
Actinidia12019 Actinidia chinensis HOM05D005694 ORTHO05D007402 3.8e-153 545.4 365 74.5
Migut.H00394 Erythranthe guttata HOM05D005694 ORTHO05D007402 3.8e-153 545.4 392 69.6
Gohir.A11G220300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 8.4e-153 544.3 430 66.5
Oeu037163.1 Olea europaea HOM05D005694 ORTHO05D007402 8.4e-153 544.3 377 70.3
Phvul.003G240300 Phaseolus vulgaris HOM05D005694 ORTHO05D007402 1.1e-152 543.9 404 68.1
A05p41050 Brassica napus HOM05D005694 ORTHO05D007402 2.4e-152 542.7 375 71.2
Hund16366 Selenicereus undatus HOM05D005694 ORTHO05D007402 2.4e-152 542.7 396 69.2
SGA_v2.0_scaffold143G35788 Striga asiatica HOM05D005694 ORTHO05D007402 2.4e-152 542.7 373 70.8
AL8G44040 Arabidopsis lyrata HOM05D005694 ORTHO05D007402 5.4e-152 541.6 375 70.4
Nitab4.5_0002657g0010 Nicotiana tabacum HOM05D005694 ORTHO05D007402 9.3e-152 540.8 389 69.2
CARHR280330 Cardamine hirsuta HOM05D005694 ORTHO05D007402 1.2e-151 540.4 417 66.9
TAR381G0027 Trochodendron aralioides HOM05D005694 ORTHO05D007402 1.2e-151 540.4 373 73.5
TAR381G0285 Trochodendron aralioides HOM05D005694 ORTHO05D007402 1.2e-151 540.4 373 73.5
Carub.0008s2721 Capsella rubella HOM05D005694 ORTHO05D007402 7.9e-151 537.7 412 66.3
C05p60220 Brassica napus HOM05D005694 ORTHO05D007402 1.3e-150 537.0 446 63.2
Nn1g04704 Nelumbo nucifera HOM05D005694 ORTHO05D007402 1.3e-150 537.0 420 67.9
Sp2g29370 Schrenkiella parvula HOM05D005694 ORTHO05D007402 1.3e-150 537.0 388 69.1
PGSC0003DMG400014873 Solanum tuberosum HOM05D005694 ORTHO05D007402 1.3e-150 537.0 382 68.3
PSO541G0377 Papaver somniferum HOM05D005694 ORTHO05D007402 8.7e-150 534.3 386 68.4
Rhsim10G0112600 Rhododendron simsii HOM05D005694 ORTHO05D007402 1.1e-149 533.9 402 67.4
AUR62003938 Chenopodium quinoa HOM05D005694 ORTHO05D007402 1.5e-149 533.5 402 66.9
TAR625G0863 Trochodendron aralioides HOM05D005694 ORTHO05D007402 1.5e-149 533.5 368 72.6
Aqoxy6G02871 Aquilegia oxysepala HOM05D005694 ORTHO05D007402 4.3e-149 531.9 384 68.8
Nitab4.5_0003962g0030 Nicotiana tabacum HOM05D005694 ORTHO05D007402 5.6e-149 531.6 389 67.9
Lsat_1_v5_gn_3_88661 Lactuca sativa HOM05D005694 ORTHO05D007402 7.4e-149 531.2 412 66.3
AUR62038254 Chenopodium quinoa HOM05D005694 ORTHO05D007402 1.3e-148 530.4 402 66.2
Duzib147G1433 Durio zibethinus HOM05D005694 ORTHO05D007402 2.1e-148 529.6 387 68.5
Aa31LG1G15820 Aethionema arabicum HOM05D005694 ORTHO05D007402 4.8e-148 528.5 371 70.1
AT5G67290 Arabidopsis thaliana HOM05D005694 ORTHO05D007402 6.2e-148 528.1 408 66.2
PSO675G2151 Papaver somniferum HOM05D005694 ORTHO05D007402 3.1e-147 525.8 420 64.8
Thhalv10004317m.g Eutrema salsugineum HOM05D005694 ORTHO05D007402 5.3e-147 525.0 416 64.7
Peaxi162Scf00365g00618 Petunia axillaris HOM05D005694 ORTHO05D007402 5.3e-147 525.0 376 67.6
Glyma.05G097800 Glycine max HOM05D005694 ORTHO05D007402 2.0e-146 523.1 389 69.2
HanXRQChr12g0377261 Helianthus annuus HOM05D005694 ORTHO05D007402 2.6e-146 522.7 403 66.7
DCAR_025759 Daucus carota HOM05D005694 ORTHO05D007402 7.6e-146 521.2 354 72.6
ECA246G1807 Erigeron canadensis HOM05D005694 ORTHO05D007402 1.7e-145 520.0 400 65.2
Eucgr.I00787 Eucalyptus grandis HOM05D005694 ORTHO05D007402 2.9e-145 519.2 377 71.4
Lj4g0018653 Lotus japonicus HOM05D005694 ORTHO05D007402 2.9e-145 519.2 375 72.5
Eucgr.I00761 Eucalyptus grandis HOM05D005694 ORTHO05D007402 6.4e-145 518.1 377 71.4
Dinv26866 Davidia involucrata HOM05D005694 ORTHO05D007402 1.9e-144 516.5 384 71.1
Sc16g0005230 Simmondsia chinensis HOM05D005694 ORTHO05D007402 5.3e-139 498.4 377 65.5
unitig_46.g18707 Utricularia gibba HOM05D005694 ORTHO05D007402 1.6e-135 486.9 380 62.9
Cc11_g04760 Coffea canephora HOM05D005694 ORTHO05D007402 6.0e-135 485.0 375 65.9
ATR1098G030 Amborella trichopoda HOM05D005694 ORTHO05D007402 1.3e-134 483.8 372 65.6
vmacro05254 Vaccinium macrocarpon HOM05D005694 ORTHO05D007402 2.4e-131 473.0 445 60.0
CDE06G0326 Ceratophyllum demersum HOM05D005694 ORTHO05D007402 5.3e-131 471.9 365 66.6
Sc16g0005220 Simmondsia chinensis HOM05D005694 ORTHO05D007402 3.6e-127 459.1 377 61.8
Dinv30033 Davidia involucrata HOM05D005694 ORTHO05D007402 1.4e-126 457.2 420 60.7
HPP92_017733 Vanilla planifolia HOM05D005694 ORTHO05D007402 1.9e-125 453.4 374 64.4
Os07g0155100 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 5.7e-125 451.8 395 60.5
Zm00001eb300250 Zea mays HOM05D005694 ORTHO05D007402 2.6e-122 443.0 385 60.8
HanXRQChr02g0044351 Helianthus annuus HOM05D005694 ORTHO05D007402 8.8e-118 427.9 377 59.2
SEGI_26559 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 7.0e-115 418.3 396 56.3
Pp3c14_12180 Physcomitrium patens HOM05D005694 ORTHO05D007402 5.0e-113 412.1 374 58.0
Mapoly0178s0017 Marchantia polymorpha HOM05D005694 ORTHO05D007402 1.1e-112 411.0 377 57.3
AagrBONN_evm.TU.Sc2ySwM_117.3787 Anthoceros agrestis HOM05D005694 ORTHO05D007402 1.6e-111 407.1 385 55.6
ECA238G4251 Erigeron canadensis HOM05D005694 ORTHO05D007402 3.0e-110 402.9 381 56.4
SMO351G0208 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 1.4e-107 394.0 394 51.8
SMO367G0384 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 5.0e-105 385.6 379 53.6
HPP92_017700 Vanilla planifolia HOM05D005694 ORTHO05D007402 2.7e-103 379.8 324 63.3
Aa31LG1G15830 Aethionema arabicum HOM05D005694 ORTHO05D007402 7.5e-93 345.1 223 72.2
SEGI_01647 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 2.2e-92 343.6 384 49.7
CAN.G572.58 Capsicum annuum HOM05D005694 ORTHO05D007402 8.3e-92 341.7 267 63.3
Lj7C77T1 Lonicera japonica HOM05D005694 ORTHO05D007402 1.7e-89 334.0 291 62.2
FAN28G1711 Fragaria x ananassa HOM05D005694 ORTHO05D007402 6.1e-87 325.5 180 86.7
FAN28G1889 Fragaria x ananassa HOM05D005694 ORTHO05D007402 6.1e-87 325.5 180 86.7
Mapoly0178s0018 Marchantia polymorpha HOM05D005694 ORTHO05D007402 5.7e-85 318.9 320 55.0
Cre16.g671450 Chlamydomonas reinhardtii HOM05D005694 ORTHO05D007402 3.3e-80 303.1 394 44.9
MCO03G407 Micromonas commoda HOM05D005694 ORTHO05D007402 7.5e-61 238.8 377 40.1
Actinidia36463 Actinidia chinensis HOM05D005694 ORTHO05D007402 2.7e-58 230.3 170 64.7
MCO09G374 Micromonas commoda HOM05D005694 ORTHO05D007402 1.1e-51 208.4 417 36.0
Lj7A77T5 Lonicera japonica HOM05D005694 ORTHO05D007402 4.2e-51 206.5 117 83.8
Aa31LG1G15840 Aethionema arabicum HOM05D005694 ORTHO05D007402 4.0e-38 163.3 139 65.5
Cfa023451 Carpinus fangiana HOM05D000115 ORTHO05D005317 2.2e-36 157.5 398 32.4
Aa31LG1G18440 Aethionema arabicum HOM05D005694 ORTHO05D007402 9.3e-35 152.1 148 56.1
Aa31sc2295G20 Aethionema arabicum HOM05D005694 ORTHO05D007402 2.7e-34 150.6 132 59.8
Medtr8g072720 Medicago truncatula HOM05D005694 ORTHO05D007402 6.2e-31 139.4 83 78.3
PRCOL_00002834 Prasinoderma coloniale HOM05D005694 ORTHO05D007402 2.0e-29 134.4 395 30.9
Aa31LG1G18450 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.7e-12 78.2 73 53.4
Aa31sc2295G10 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.7e-12 78.2 73 53.4
BcaNung00805 Brassica carinata HOM05D005694 ORTHO05D007402 4.6e-10 70.1 78 47.4
Cfa026332 Carpinus fangiana HOM05D005694 ORTHO05D123404 7.9e-10 69.3 304 25.7
Os01g0594800 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 1.5e-08 65.1 108 38.9


User provided reference genes

Program Settings