Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004052 Carpinus fangiana HOM05D000056 ORTHO05D000019 3.8e-41 171.0 82 100.0
BcaC06g33103 Brassica carinata HOM05D000056 ORTHO05D000019 1.4e-11 72.8 73 46.6
BcaC06g33293 Brassica carinata HOM05D000056 ORTHO05D000019 1.4e-11 72.8 73 46.6
ClCG01G017000 Citrullus lanatus HOM05D000069 ORTHO05D000019 1.8e-11 72.4 74 45.9
CsaV3_6G043490 Cucumis sativus L. HOM05D000056 ORTHO05D000019 1.8e-11 72.4 74 45.9
AT3G50140 Arabidopsis thaliana HOM05D000056 ORTHO05D000019 2.4e-11 72.0 73 45.2
AL5G30260 Arabidopsis lyrata HOM05D000056 ORTHO05D000019 3.1e-11 71.6 73 45.2
MELO3C007579.2 Cucumis melo HOM05D000056 ORTHO05D000019 3.1e-11 71.6 74 45.9
Sp5g11960 Schrenkiella parvula HOM05D000056 ORTHO05D000019 3.1e-11 71.6 73 43.8
AL5G30310 Arabidopsis lyrata HOM05D000056 ORTHO05D000019 4.0e-11 71.2 73 45.2
AT3G50170 Arabidopsis thaliana HOM05D000056 ORTHO05D000019 4.0e-11 71.2 73 45.2
Carub.0005s1650 Capsella rubella HOM05D000056 ORTHO05D000019 6.9e-11 70.5 73 45.2
C03p44420 Brassica napus HOM05D000056 ORTHO05D000019 9.0e-11 70.1 73 43.8
A09p43240 Brassica napus HOM05D000056 ORTHO05D000019 1.5e-10 69.3 73 43.8
BraA09t39794Z Brassica rapa HOM05D000056 ORTHO05D000019 1.5e-10 69.3 73 43.8
CARHR159200 Cardamine hirsuta HOM05D000056 ORTHO05D000019 1.5e-10 69.3 73 45.2
Lalb_Chr09g0323351 Lupinus albus HOM05D000056 ORTHO05D000019 2.0e-10 68.9 73 42.5
Nn1g04741 Nelumbo nucifera HOM05D000056 ORTHO05D000019 2.0e-10 68.9 74 44.6
AT3G50150 Arabidopsis thaliana HOM05D000056 ORTHO05D000019 3.4e-10 68.2 73 42.5
TAR628G0432 Trochodendron aralioides HOM05D000056 ORTHO05D000019 3.4e-10 68.2 73 41.1
Manes.12G107800 Manihot esculenta HOM05D000056 ORTHO05D000019 4.5e-10 67.8 73 43.8
Sed0007338 Sechium edule HOM05D000056 ORTHO05D000019 4.5e-10 67.8 74 44.6
Sed0010655 Sechium edule HOM05D000056 ORTHO05D000019 4.5e-10 67.8 74 43.2
THA.LOC104827372 Tarenaya hassleriana HOM05D000056 ORTHO05D000019 4.5e-10 67.8 73 45.2
A03p47740 Brassica napus HOM05D000056 ORTHO05D000019 5.8e-10 67.4 73 45.2
C07p45680 Brassica napus HOM05D000056 ORTHO05D000019 5.8e-10 67.4 73 45.2
C08p25230 Brassica napus HOM05D000056 ORTHO05D000019 5.8e-10 67.4 73 41.1
BolC8t50145H Brassica oleracea HOM05D000056 ORTHO05D000019 5.8e-10 67.4 73 41.1
CARHR159240 Cardamine hirsuta HOM05D000056 ORTHO05D000019 5.8e-10 67.4 69 43.5
AT3G50130 Arabidopsis thaliana HOM05D000056 ORTHO05D000019 7.6e-10 67.0 73 41.1
BcaC06g33107 Brassica carinata HOM05D000056 ORTHO05D000019 7.6e-10 67.0 73 41.1
BcaC06g33283 Brassica carinata HOM05D000056 ORTHO05D000019 7.6e-10 67.0 73 41.1
BcaC07g39479 Brassica carinata HOM05D000056 ORTHO05D000019 7.6e-10 67.0 73 42.5
A03p47710 Brassica napus HOM05D000056 ORTHO05D000019 7.6e-10 67.0 73 41.1
A09p43230 Brassica napus HOM05D000056 ORTHO05D000019 7.6e-10 67.0 73 42.5
C08p25220 Brassica napus HOM05D000056 ORTHO05D000019 7.6e-10 67.0 73 42.5
BolC8t50144H Brassica oleracea HOM05D000056 ORTHO05D000019 7.6e-10 67.0 73 42.5
BraA03t13882Z Brassica rapa HOM05D000056 ORTHO05D000019 7.6e-10 67.0 73 41.1
COL.COLO4_11472 Corchorus olitorius HOM05D000056 ORTHO05D000019 7.6e-10 67.0 73 43.8
AL5G30240 Arabidopsis lyrata HOM05D000056 ORTHO05D000019 1.0e-09 66.6 73 42.5
BcaB01g00638 Brassica carinata HOM05D000056 ORTHO05D000019 1.0e-09 66.6 73 42.5
Carub.0005s1646 Capsella rubella HOM05D000056 ORTHO05D000019 1.0e-09 66.6 73 42.5
CARHR159180 Cardamine hirsuta HOM05D000056 ORTHO05D000019 1.0e-09 66.6 73 42.5
Thhalv10010280m.g Eutrema salsugineum HOM05D000056 ORTHO05D000019 1.0e-09 66.6 73 42.5
HanXRQChr02g0044311 Helianthus annuus HOM05D000056 ORTHO05D000019 1.0e-09 66.6 73 43.8
AT3G50120 Arabidopsis thaliana HOM05D000056 ORTHO05D000019 1.3e-09 66.2 73 42.5
Carub.0005s1647 Capsella rubella HOM05D000056 ORTHO05D000019 1.3e-09 66.2 73 42.5
COL.COLO4_11471 Corchorus olitorius HOM05D000056 ORTHO05D000019 1.3e-09 66.2 73 41.1
DCAR_010858 Daucus carota HOM05D000056 ORTHO05D000019 1.3e-09 66.2 73 47.9
DCAR_010859 Daucus carota HOM05D000056 ORTHO05D000019 1.3e-09 66.2 73 46.6
Eucgr.I00851 Eucalyptus grandis HOM05D000056 ORTHO05D000019 1.3e-09 66.2 73 43.8
Thhalv10011143m.g Eutrema salsugineum HOM05D000056 ORTHO05D000019 1.3e-09 66.2 73 43.8
Lj2g0027411 Lotus japonicus HOM05D000056 ORTHO05D000019 1.3e-09 66.2 73 45.2
RcHm_v2.0_Chr2g0106461 Rosa chinensis HOM05D000056 ORTHO05D000019 1.3e-09 66.2 73 43.8
Aa31LG4G18490 Aethionema arabicum HOM05D000056 ORTHO05D000019 1.7e-09 65.9 73 39.7
Aqoxy6G02910 Aquilegia oxysepala HOM05D000056 ORTHO05D000019 1.7e-09 65.9 73 39.7
BcaC06g33108 Brassica carinata HOM05D000056 ORTHO05D000019 1.7e-09 65.9 73 41.1
BcaC06g33285 Brassica carinata HOM05D000056 ORTHO05D000019 1.7e-09 65.9 73 41.1
A02p30810 Brassica napus HOM05D000056 ORTHO05D000019 1.7e-09 65.9 73 41.1
BraA02t08095Z Brassica rapa HOM05D000056 ORTHO05D000019 1.7e-09 65.9 73 41.1
FvH4_1g16560 Fragaria vesca HOM05D000056 ORTHO05D000019 1.7e-09 65.9 73 43.8
FAN19G0709 Fragaria x ananassa HOM05D000056 ORTHO05D000019 1.7e-09 65.9 73 43.8
FAN23G2406 Fragaria x ananassa HOM05D000056 ORTHO05D000019 1.7e-09 65.9 73 43.8
FAN26G1842 Fragaria x ananassa HOM05D000056 ORTHO05D000019 1.7e-09 65.9 73 43.8
Prupe.6G230300 Prunus persica HOM05D000056 ORTHO05D000019 1.7e-09 65.9 73 42.5
Sp5g12000 Schrenkiella parvula HOM05D000056 ORTHO05D000019 1.7e-09 65.9 73 41.1
Gorai.007G217000 Gossypium raimondii HOM05D000056 ORTHO05D000019 2.2e-09 65.5 73 41.1
Lalb_Chr05g0213411 Lupinus albus HOM05D000056 ORTHO05D000019 2.2e-09 65.5 73 43.8
BcaC06g33104 Brassica carinata HOM05D000056 ORTHO05D000019 2.9e-09 65.1 69 44.9
BcaC06g33288 Brassica carinata HOM05D000056 ORTHO05D000019 2.9e-09 65.1 69 44.9
BolC7t45087H Brassica oleracea HOM05D000056 ORTHO05D000019 2.9e-09 65.1 73 41.1
BolC7t45090H Brassica oleracea HOM05D000056 ORTHO05D000019 2.9e-09 65.1 69 44.9
Haze_15359 Corylus avellana HOM05D000056 ORTHO05D000019 2.9e-09 65.1 73 42.5
Lsat_1_v5_gn_2_85661 Lactuca sativa HOM05D000056 ORTHO05D000019 2.9e-09 65.1 73 42.5
TAR376G1217 Trochodendron aralioides HOM05D000056 ORTHO05D000019 2.9e-09 65.1 73 38.4
Carub.0005s1648 Capsella rubella HOM05D000056 ORTHO05D000019 3.8e-09 64.7 73 41.1
FAN28G1948 Fragaria x ananassa HOM05D000056 ORTHO05D000019 3.8e-09 64.7 73 43.8
MD02G1177800 Malus domestica HOM05D000056 ORTHO05D000019 3.8e-09 64.7 73 42.5
BcaC06g33287 Brassica carinata HOM05D000056 ORTHO05D000019 5.0e-09 64.3 73 41.1
A03p47730 Brassica napus HOM05D000056 ORTHO05D000019 5.0e-09 64.3 69 43.5
BolC7t45088H Brassica oleracea HOM05D000056 ORTHO05D000019 5.0e-09 64.3 73 41.1
BraA03t13884Z Brassica rapa HOM05D000056 ORTHO05D000019 5.0e-09 64.3 69 43.5
Thhalv10011061m.g Eutrema salsugineum HOM05D000056 ORTHO05D000019 5.0e-09 64.3 73 39.7
Nn5g30388 Nelumbo nucifera HOM05D000056 ORTHO05D000019 5.0e-09 64.3 73 41.1
Phvul.002G015900 Phaseolus vulgaris HOM05D000056 ORTHO05D000019 5.0e-09 64.3 74 40.5
Sabra07G0042700 Salix brachista HOM05D000056 ORTHO05D000019 5.0e-09 64.3 73 43.8
MSTRG.23720 Avicennia marina HOM05D000056 ORTHO05D000019 6.5e-09 63.9 73 42.5
Eucgr.I00808 Eucalyptus grandis HOM05D000056 ORTHO05D000019 6.5e-09 63.9 73 42.5
Actinidia16464 Actinidia chinensis HOM05D000056 ORTHO05D000019 8.4e-09 63.5 73 39.7
CARHR159190 Cardamine hirsuta HOM05D000056 ORTHO05D000019 8.4e-09 63.5 73 41.1
Gohir.A11G196500 Gossypium hirsutum HOM05D000056 ORTHO05D000019 8.4e-09 63.5 73 41.1
Sc07g0000680 Simmondsia chinensis HOM05D000056 ORTHO05D000019 8.4e-09 63.5 73 43.8
VMungo1215G2956 Vigna mungo HOM05D000056 ORTHO05D000019 8.4e-09 63.5 73 41.1
A03p47720 Brassica napus HOM05D000056 ORTHO05D000019 1.1e-08 63.2 73 39.7
BraA03t13883Z Brassica rapa HOM05D000056 ORTHO05D000019 1.1e-08 63.2 73 39.7
CARHR159210 Cardamine hirsuta HOM05D000056 ORTHO05D000019 1.1e-08 63.2 73 39.7
BraA09t39793Z Brassica rapa HOM05D000056 ORTHO05D000019 1.4e-08 62.8 84 36.9
Ciclev10025336m.g Citrus clementina HOM05D000056 ORTHO05D000019 1.4e-08 62.8 73 39.7
Cpa.g.sc55.101 Carica papaya HOM05D000056 ORTHO05D000019 1.9e-08 62.4 73 39.7
Potri.007G047700 Populus trichocarpa HOM05D000056 ORTHO05D000019 1.9e-08 62.4 73 41.1
PGR004G1058 Punica granatum HOM05D000056 ORTHO05D000019 1.9e-08 62.4 73 39.7
arahy.Tifrunner.gnm1.ann1.BPQ8D5 Arachis hypogaea HOM05D000056 ORTHO05D000019 2.5e-08 62.0 73 39.7
arahy.Tifrunner.gnm1.ann1.W5KLKY Arachis hypogaea HOM05D000056 ORTHO05D000019 2.5e-08 62.0 73 39.7
Carub.0005s1649 Capsella rubella HOM05D000056 ORTHO05D000019 2.5e-08 62.0 73 39.7
CiPaw.01G013900 Carya illinoinensis HOM05D000056 ORTHO05D000019 2.5e-08 62.0 73 41.1
Sp5g11990 Schrenkiella parvula HOM05D000056 ORTHO05D000019 2.5e-08 62.0 73 41.1
AUR62038242 Chenopodium quinoa HOM05D000056 ORTHO05D000019 3.2e-08 61.6 73 42.5
Oeu014790.1 Olea europaea HOM05D000056 ORTHO05D000019 3.2e-08 61.6 73 41.1
Sp5g11980 Schrenkiella parvula HOM05D000056 ORTHO05D000019 3.2e-08 61.6 70 40.0
Thecc.01G062300 Theobroma cacao HOM05D000056 ORTHO05D000019 3.2e-08 61.6 73 39.7
unitig_21.g20472 Utricularia gibba HOM05D000056 ORTHO05D000019 3.2e-08 61.6 73 38.4
Carub.0005s1651 Capsella rubella HOM05D000056 ORTHO05D000019 4.2e-08 61.2 70 40.0
AUR62003927 Chenopodium quinoa HOM05D000056 ORTHO05D000019 4.2e-08 61.2 73 42.5
Eucgr.I00814 Eucalyptus grandis HOM05D000056 ORTHO05D000019 4.2e-08 61.2 69 43.5
Thhalv10010906m.g Eutrema salsugineum HOM05D000056 ORTHO05D000019 4.2e-08 61.2 70 40.0
Nitab4.5_0001373g0090 Nicotiana tabacum HOM05D000056 ORTHO05D000019 4.2e-08 61.2 73 41.1
Sc04g0003540 Simmondsia chinensis HOM05D000056 ORTHO05D000019 4.2e-08 61.2 74 40.5
Solyc02g093020.3 Solanum lycopersicum HOM05D000056 ORTHO05D000019 4.2e-08 61.2 73 37.0
Sopen02g037590 Solanum pennellii HOM05D000056 ORTHO05D000019 4.2e-08 61.2 73 37.0
TWI53G0255 Tripterygium wilfordii HOM05D000056 ORTHO05D000019 4.2e-08 61.2 72 41.7
CDE04G3427 Ceratophyllum demersum HOM05D000056 ORTHO05D000019 5.5e-08 60.8 69 43.5
Ca_24744_v3 Cicer arietinum L. HOM05D000056 ORTHO05D000019 5.5e-08 60.8 73 37.0
Cc07_g06370 Coffea canephora HOM05D000056 ORTHO05D000019 5.5e-08 60.8 73 41.1
Nitab4.5_0001039g0020 Nicotiana tabacum HOM05D000056 ORTHO05D000019 5.5e-08 60.8 73 39.7
Ah.03g145870 Amaranthus hybridus HOM05D000056 ORTHO05D000019 7.1e-08 60.5 73 38.4
Eucgr.I00852 Eucalyptus grandis HOM05D000056 ORTHO05D000019 7.1e-08 60.5 74 41.9
Peaxi162Scf00549g00314 Petunia axillaris HOM05D000056 ORTHO05D000019 7.1e-08 60.5 73 37.0
Psat2g168040 Pisum sativum HOM05D000056 ORTHO05D000019 7.1e-08 60.5 73 39.7
TPR.G26884 Trifolium pratense HOM05D000056 ORTHO05D000019 7.1e-08 60.5 73 39.7
AL5G30320 Arabidopsis lyrata HOM05D000056 ORTHO05D000019 9.3e-08 60.1 73 39.7
ECA238G3820 Erigeron canadensis HOM05D000056 ORTHO05D000019 9.3e-08 60.1 74 41.9
Eucgr.I00871 Eucalyptus grandis HOM05D000056 ORTHO05D000019 9.3e-08 60.1 70 41.4
PSO675G1093 Papaver somniferum HOM05D000056 ORTHO05D000019 9.3e-08 60.1 73 38.4
vmacro17971 Vaccinium macrocarpon HOM05D000056 ORTHO05D000019 9.3e-08 60.1 73 39.7
Glyma.01G189300 Glycine max HOM05D000056 ORTHO05D000019 1.2e-07 59.7 73 41.1
Medtr5g016570 Medicago truncatula HOM05D000056 ORTHO05D000019 1.2e-07 59.7 73 38.4
Rhsim08G0098100 Rhododendron simsii HOM05D000056 ORTHO05D000019 1.2e-07 59.7 73 39.7
BcaC06g33106 Brassica carinata HOM05D000056 ORTHO05D000019 1.6e-07 59.3 69 40.6
BcaC06g33286 Brassica carinata HOM05D000056 ORTHO05D000019 1.6e-07 59.3 69 40.6
Hma1.2p1_2648F.1_g326110 Hydrangea macrophylla HOM05D000056 ORTHO05D000019 1.6e-07 59.3 73 39.7
Lj7C75T2 Lonicera japonica HOM05D000056 ORTHO05D000019 1.6e-07 59.3 73 41.1
PGSC0003DMG400035938 Solanum tuberosum HOM05D000056 ORTHO05D000019 1.6e-07 59.3 73 37.0
Atru.chr3.262 Acer truncatum HOM05D000056 ORTHO05D000019 2.7e-07 58.5 73 37.0
Ah.03g145860 Amaranthus hybridus HOM05D000056 ORTHO05D000019 2.7e-07 58.5 73 39.7
AT3G50180 Arabidopsis thaliana HOM05D000056 ORTHO05D000019 2.7e-07 58.5 73 41.1
Carub.0005s1652 Capsella rubella HOM05D000056 ORTHO05D000019 3.5e-07 58.2 73 41.1
ECA232G4898 Erigeron canadensis HOM05D000056 ORTHO05D000019 3.5e-07 58.2 73 42.5
Lsat_1_v5_gn_4_164320 Lactuca sativa HOM05D000056 ORTHO05D000019 3.5e-07 58.2 73 42.5
PGR004G0914 Punica granatum HOM05D000056 ORTHO05D000019 3.5e-07 58.2 73 38.4
CANSAT25G2857 Cannabis sativa HOM05D000056 ORTHO05D000019 6.1e-07 57.4 75 38.7
CANSAT25G3012 Cannabis sativa HOM05D000056 ORTHO05D000019 6.1e-07 57.4 75 38.7
Dinv30028 Davidia involucrata HOM05D000056 ORTHO05D000019 6.1e-07 57.4 69 39.1
Eucgr.E01486 Eucalyptus grandis HOM05D000056 ORTHO05D000019 6.1e-07 57.4 74 44.6
Sabra07G0042500 Salix brachista HOM05D000056 ORTHO05D000019 6.1e-07 57.4 68 41.2
ATR1152G008 Amborella trichopoda HOM05D000056 ORTHO05D000019 7.9e-07 57.0 74 35.1
Migut.H00404 Erythranthe guttata HOM05D000056 ORTHO05D000019 7.9e-07 57.0 82 39.0
Eucgr.I00876 Eucalyptus grandis HOM05D000056 ORTHO05D000019 1.3e-06 56.2 70 41.4
CDE04G0767 Ceratophyllum demersum HOM05D000056 ORTHO05D000019 1.8e-06 55.8 69 37.7
Os04g0505400 Oryza sativa ssp. japonica HOM05D000056 ORTHO05D000019 2.3e-06 55.5 63 44.4
Eucgr.I00809 Eucalyptus grandis HOM05D000056 ORTHO05D000019 3.0e-06 55.1 73 38.4
Dinv00147 Davidia involucrata HOM05D000056 ORTHO05D000019 3.9e-06 54.7 72 36.1
Dinv15850 Davidia involucrata HOM05D000056 ORTHO05D000019 3.9e-06 54.7 63 41.3
Thhalv10011018m.g Eutrema salsugineum HOM05D000056 ORTHO05D000019 3.9e-06 54.7 73 38.4
Aqoxy2G02736 Aquilegia oxysepala HOM05D000056 ORTHO05D000019 5.1e-06 54.3 72 43.1
Eucgr.I00854 Eucalyptus grandis HOM05D000056 ORTHO05D000019 5.1e-06 54.3 73 37.0
MD15G1287600 Malus domestica HOM05D000056 ORTHO05D000019 5.1e-06 54.3 63 41.3
Eucgr.I00823 Eucalyptus grandis HOM05D000056 ORTHO05D000019 6.7e-06 53.9 73 35.6
CARHR159230 Cardamine hirsuta HOM05D000056 ORTHO05D000019 8.7e-06 53.5 57 45.6
Dinv36809 Davidia involucrata HOM05D000056 ORTHO05D000019 8.7e-06 53.5 72 36.1
GSVIVG01001131001 Vitis vinifera HOM05D000056 ORTHO05D000019 8.7e-06 53.5 67 35.8
Zm00001eb426130 Zea mays HOM05D000056 ORTHO05D000019 8.7e-06 53.5 63 38.1


User provided reference genes

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