Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 4.2e-181 637.9 319 100.0
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 5.4e-160 567.8 368 80.4
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 8.0e-148 527.3 278 93.5
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 2.8e-132 475.7 319 76.2
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 3.5e-127 458.8 279 80.6
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 2.6e-122 442.6 320 69.1
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 7.8e-119 431.0 321 68.8
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 3.0e-118 429.1 325 66.8
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 1.1e-117 427.2 267 73.0
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 2.5e-117 426.0 328 64.9
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 7.3e-117 424.5 320 69.1
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 1.4e-115 420.2 319 65.8
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 1.4e-115 420.2 324 63.9
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 1.8e-115 419.9 309 67.3
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 5.3e-115 418.3 321 66.0
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.5e-114 416.8 313 70.9
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.5e-114 416.8 313 70.9
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 7.6e-114 414.5 319 66.5
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 7.6e-114 414.5 335 66.3
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 4.2e-112 408.7 302 67.2
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 9.3e-112 407.5 308 63.6
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 1.2e-111 407.1 308 64.9
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 2.1e-111 406.4 321 63.6
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 2.7e-111 406.0 316 65.8
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 1.3e-110 403.7 271 69.0
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 2.3e-110 402.9 278 71.2
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 2.3e-110 402.9 271 69.0
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 3.0e-110 402.5 304 65.8
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 3.9e-110 402.1 320 65.6
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 1.1e-109 400.6 316 65.5
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 9.6e-109 397.5 316 64.2
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 9.6e-109 397.5 307 65.5
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 3.6e-108 395.6 271 70.1
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 3.6e-108 395.6 322 63.0
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 1.1e-107 394.0 321 64.5
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 1.1e-107 394.0 303 65.0
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 1.8e-107 393.3 323 59.8
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 1.5e-106 390.2 305 61.3
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 2.0e-106 389.8 286 65.7
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 3.4e-106 389.0 312 63.5
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 4.5e-106 388.7 273 68.9
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 1.3e-105 387.1 282 67.7
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 1.7e-105 386.7 274 66.4
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 8.4e-105 384.4 286 64.0
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 8.4e-105 384.4 309 61.5
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 1.9e-104 383.3 316 64.2
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 3.2e-104 382.5 305 62.0
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 3.2e-104 382.5 304 66.8
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 7.1e-104 381.3 320 62.5
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 1.2e-103 380.6 310 62.3
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 2.7e-103 379.4 269 68.4
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 3.5e-103 379.0 310 61.9
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 7.9e-103 377.9 310 61.0
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 1.8e-102 376.7 292 64.4
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 3.9e-102 375.6 321 59.2
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 2.5e-101 372.9 331 59.8
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 3.3e-101 372.5 288 62.2
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 9.6e-101 370.9 298 65.1
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 1.3e-100 370.5 319 58.0
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 2.1e-100 369.8 276 64.1
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 4.8e-100 368.6 317 58.0
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 4.8e-100 368.6 273 64.8
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 4.8e-100 368.6 321 61.4
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 1.1e-99 367.5 298 62.4
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 3.1e-99 365.9 298 63.1
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 3.1e-99 365.9 314 57.0
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 4.0e-99 365.5 306 61.1
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 9.0e-99 364.4 272 66.2
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 2.6e-98 362.8 301 63.1
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 3.2e-96 355.9 311 57.2
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 1.6e-95 353.6 289 62.3
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 3.5e-95 352.4 316 57.0
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 3.5e-95 352.4 289 61.9
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 3.0e-94 349.4 299 58.2
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 3.0e-94 349.4 285 61.8
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 3.9e-94 349.0 281 60.5
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 1.5e-93 347.1 276 58.7
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 4.8e-92 342.0 300 57.0
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 5.3e-91 338.6 316 53.5
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 2.0e-90 336.7 292 55.8
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 2.6e-90 336.3 322 55.0
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 3.4e-90 335.9 311 55.3
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 5.8e-90 335.1 316 54.1
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 1.2e-87 327.4 323 52.3
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 1.6e-87 327.0 287 57.1
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 2.1e-87 326.6 321 52.3
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 3.5e-87 325.9 310 53.9
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 6.1e-87 325.1 307 53.7
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 7.9e-87 324.7 268 66.8
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 1.3e-86 323.9 322 52.8
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 5.1e-86 322.0 321 52.3
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 8.7e-86 321.2 329 52.9
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 1.9e-85 320.1 324 51.9
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 4.3e-85 318.9 328 52.7
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 9.7e-85 317.8 302 53.3
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 4.8e-84 315.5 311 53.1
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 6.3e-84 315.1 311 52.4
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 3.1e-83 312.8 307 52.1
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 5.0e-81 305.4 204 68.6
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 8.5e-81 304.7 341 47.5
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 8.5e-81 304.7 306 52.9
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 1.4e-80 303.9 271 55.0
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 3.2e-80 302.8 203 73.9
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 3.2e-80 302.8 203 73.9
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 4.2e-80 302.4 312 52.9
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 1.8e-78 297.0 305 50.2
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 1.1e-77 294.3 266 56.4
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.5e-77 293.9 312 50.0
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 2.0e-77 293.5 308 49.4
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 5.7e-77 292.0 198 73.7
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 5.7e-77 292.0 308 50.3
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 7.4e-77 291.6 291 50.5
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 1.8e-75 287.0 312 51.3
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 5.3e-75 285.4 325 46.8
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 1.5e-74 283.9 287 49.8
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 2.0e-74 283.5 319 47.3
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 1.3e-73 280.8 315 50.8
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 1.9e-72 276.9 295 48.1
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 1.5e-69 267.3 264 49.6
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.5e-69 267.3 254 51.2
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 5.3e-67 258.8 309 45.6
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 2.9e-65 253.1 320 43.1
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 3.8e-65 252.7 235 54.0
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 3.6e-63 246.1 308 45.1
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 4.7e-63 245.7 291 44.7
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 1.5e-61 240.7 217 57.6
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 1.3e-60 237.7 306 42.2
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 1.6e-58 230.7 300 41.3
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 7.2e-56 221.9 178 60.7
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 3.0e-54 216.5 305 40.7
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 7.5e-53 211.8 259 40.9
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 2.2e-52 210.3 168 60.1
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 5.9e-50 202.2 258 39.9
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 2.9e-49 199.9 262 40.8
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 2.7e-47 193.4 260 38.8
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.0e-46 191.4 263 37.3
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 1.0e-33 148.3 208 40.4
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 4.3e-32 142.9 98 71.4
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 1.1e-24 118.2 101 51.5
Hma1.2p1_0200F.1_g085850 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.9e-24 117.5 109 64.2
Hma1.2p1_2839F.1_g329297 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.9e-24 117.5 109 64.2
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 1.2e-23 114.8 126 45.2
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 2.1e-23 114.0 202 33.2
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 1.5e-21 107.8 92 50.0
TPR.G22585 Trifolium pratense HOM05D004996 ORTHO05D005844 1.9e-19 100.9 77 62.3
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 3.5e-18 96.7 132 39.4
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 3.4e-13 80.1 261 26.1
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 2.2e-12 77.4 188 29.8
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 3.2e-11 73.6 198 28.3


User provided reference genes

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