Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 5.1e-179 630.9 313 100.0
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 4.2e-165 584.7 317 94.0
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 1.3e-126 456.8 326 74.5
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 1.9e-125 453.0 311 77.2
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 2.0e-106 389.8 280 69.6
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 6.3e-105 384.8 306 64.1
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 3.5e-103 379.0 310 62.9
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 1.7e-102 376.7 285 64.6
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 1.4e-99 367.1 278 67.6
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 3.0e-99 365.9 316 62.7
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 4.0e-99 365.5 280 68.2
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 7.5e-98 361.3 312 61.2
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 5.7e-90 335.1 238 69.7
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 3.5e-87 325.9 298 54.4
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 4.5e-87 325.5 250 66.8
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 5.9e-87 325.1 307 53.7
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 7.8e-87 324.7 269 57.6
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 1.7e-86 323.6 284 57.0
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 5.0e-86 322.0 301 54.2
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 3.3e-85 319.3 315 53.0
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 8.0e-84 314.7 313 54.0
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 8.0e-84 314.7 313 54.0
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 1.4e-83 313.9 305 52.5
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 1.5e-82 310.5 308 53.2
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 9.8e-82 307.8 306 52.9
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 9.8e-82 307.8 319 51.1
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 1.3e-81 307.4 315 51.4
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.7e-81 307.0 291 53.3
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 2.9e-81 306.2 291 54.6
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 6.4e-81 305.1 282 53.5
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 8.3e-81 304.7 315 50.2
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 1.1e-80 304.3 290 50.7
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 1.1e-80 304.3 324 51.5
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 1.4e-80 303.9 267 54.3
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 1.9e-80 303.5 265 56.2
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 2.4e-80 303.1 302 50.0
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 3.2e-80 302.8 308 48.7
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 4.1e-80 302.4 307 50.2
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 4.1e-80 302.4 322 50.3
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 7.0e-80 301.6 269 55.4
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 9.2e-80 301.2 268 55.2
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 1.2e-79 300.8 304 50.0
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 2.0e-79 300.1 285 52.6
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 2.0e-79 300.1 317 48.6
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 6.0e-79 298.5 281 53.0
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 1.0e-78 297.7 300 51.3
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 1.3e-78 297.4 280 51.8
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 1.7e-78 297.0 304 51.3
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 2.3e-78 296.6 268 54.5
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 2.3e-78 296.6 271 55.4
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 5.0e-78 295.4 268 55.2
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 6.6e-78 295.0 307 50.2
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 6.6e-78 295.0 281 53.0
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 8.6e-78 294.7 305 49.2
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 1.1e-77 294.3 270 54.4
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 1.5e-77 293.9 302 49.3
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 1.9e-77 293.5 268 53.0
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 1.9e-77 293.5 268 53.0
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 5.6e-77 292.0 311 49.5
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 7.3e-77 291.6 306 51.0
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 9.5e-77 291.2 281 51.6
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 9.5e-77 291.2 300 49.3
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 1.6e-76 290.4 301 49.5
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 3.6e-76 289.3 271 52.4
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 8.0e-76 288.1 280 52.1
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 1.8e-75 287.0 307 48.5
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 2.3e-75 286.6 285 49.8
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 4.0e-75 285.8 307 48.5
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 5.2e-75 285.4 288 49.7
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 1.2e-74 284.3 301 48.8
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 1.5e-74 283.9 270 51.1
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 1.5e-74 283.9 297 48.8
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 2.6e-74 283.1 301 47.8
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 3.4e-74 282.7 288 51.7
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 4.4e-74 282.3 265 51.7
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 5.8e-74 282.0 313 47.3
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 7.5e-74 281.6 270 50.0
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 9.8e-74 281.2 283 50.2
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 1.3e-73 280.8 310 50.3
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 1.7e-73 280.4 305 49.2
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 2.2e-73 280.0 276 48.6
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 3.7e-73 279.3 297 50.5
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 4.9e-73 278.9 277 51.3
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 3.2e-72 276.2 283 48.8
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 4.1e-72 275.8 286 50.7
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 5.4e-72 275.4 281 47.0
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 7.0e-72 275.0 285 47.4
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 1.2e-71 274.2 267 48.3
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 3.5e-71 272.7 298 45.0
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 1.0e-70 271.2 304 45.7
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 1.0e-70 271.2 267 48.7
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 2.3e-70 270.0 284 48.2
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 3.0e-70 269.6 267 48.3
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 8.6e-70 268.1 267 47.9
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 2.8e-68 263.1 321 43.0
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 4.7e-68 262.3 306 43.8
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 6.2e-68 261.9 286 46.5
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 1.1e-67 261.2 320 42.8
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 1.4e-67 260.8 312 43.9
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 2.3e-67 260.0 308 43.8
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 6.8e-67 258.5 304 45.1
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 3.4e-66 256.1 280 43.9
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 4.4e-66 255.8 315 42.9
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 8.3e-65 251.5 236 52.1
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 8.3e-65 251.5 321 41.7
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 3.2e-64 249.6 314 43.0
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 7.1e-64 248.4 271 46.5
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 4.6e-63 245.7 281 45.2
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 6.0e-63 245.4 269 44.6
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 7.8e-63 245.0 319 41.4
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 1.0e-62 244.6 272 44.9
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 3.9e-62 242.7 340 39.1
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 3.9e-62 242.7 291 43.3
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 8.6e-62 241.5 270 43.7
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 4.3e-61 239.2 268 44.8
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 7.3e-61 238.4 309 39.8
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 1.4e-59 234.2 307 40.7
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 3.4e-58 229.6 303 39.9
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 5.8e-58 228.8 306 40.5
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 7.8e-55 218.4 203 52.7
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.3e-54 217.6 204 56.4
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.3e-54 217.6 204 56.4
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 1.9e-53 213.8 288 40.3
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 7.3e-53 211.8 298 38.9
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 2.1e-52 210.3 260 40.4
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 4.7e-52 209.1 200 54.5
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 6.6e-46 188.7 269 37.5
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 5.6e-45 185.7 268 36.9
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 6.2e-44 182.2 198 47.0
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 1.1e-43 181.4 296 36.1
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 1.4e-43 181.0 174 48.3
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 3.4e-42 176.4 261 37.5
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.3e-41 174.5 276 37.3
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 3.8e-41 172.9 264 36.0
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 5.4e-40 169.1 272 33.1
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 1.9e-37 160.6 180 47.2
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 4.5e-34 149.4 206 37.4
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 1.7e-25 120.9 98 60.2
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 1.6e-20 104.4 129 42.6
Hma1.2p1_0200F.1_g085850 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 3.7e-20 103.2 107 50.5
Hma1.2p1_2839F.1_g329297 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 3.7e-20 103.2 107 50.5
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 4.5e-18 96.3 208 28.8
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 1.3e-17 94.7 301 26.9
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 1.9e-16 90.9 240 28.3
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 9.4e-16 88.6 264 26.5
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 8.8e-14 82.0 92 44.6
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 2.5e-13 80.5 135 35.6
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 6.3e-12 75.9 99 42.4
TPR.G22585 Trifolium pratense HOM05D004996 ORTHO05D005844 2.6e-10 70.5 78 43.6


User provided reference genes

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