Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa004003 Carpinus fangiana HOM05D005929 ORTHO05D007869 0.0e+00 1374.8 729 100.0
CiPaw.01G019600 Carya illinoinensis HOM05D005929 ORTHO05D007869 0.0e+00 1123.2 729 83.3
CiPaw.02G008900 Carya illinoinensis HOM05D005929 ORTHO05D007869 0.0e+00 1107.0 729 81.9
Manes.12G099700 Manihot esculenta HOM05D005929 ORTHO05D007869 4.3e-306 1054.3 730 77.3
Dinv39868 Davidia involucrata HOM05D005929 ORTHO05D007869 1.0e-299 1033.1 731 77.7
GSVIVG01022148001 Vitis vinifera HOM05D005929 ORTHO05D007869 3.3e-298 1028.1 734 75.5
MD00G1045200 Malus domestica HOM05D005929 ORTHO05D007869 9.0e-296 1020.0 732 77.0
Prupe.7G135500 Prunus persica HOM05D005929 ORTHO05D007869 9.0e-296 1020.0 730 77.8
CSS0000081 Camellia sinensis var. sinensis HOM05D005929 ORTHO05D007869 2.9e-294 1015.0 731 76.1
MD02G1169700 Malus domestica HOM05D005929 ORTHO05D007869 1.4e-293 1012.7 732 76.0
Potri.005G137100 Populus trichocarpa HOM05D005929 ORTHO05D007869 2.5e-293 1011.9 737 73.4
QL06p041881 Quercus lobata HOM05D005929 ORTHO05D007869 1.3e-289 999.6 592 86.7
Sabra05G0109600 Salix brachista HOM05D005929 ORTHO05D007869 1.6e-289 999.2 730 73.0
Ciclev10025029m.g Citrus clementina HOM05D005929 ORTHO05D007869 6.3e-289 997.3 730 74.7
TPR.G19031 Trifolium pratense HOM05D005929 ORTHO05D007869 8.2e-289 996.9 730 72.7
VMungo0251G2155 Vigna mungo HOM05D005929 ORTHO05D007869 9.0e-288 993.4 730 72.1
Lalb_Chr05g0226621 Lupinus albus HOM05D005929 ORTHO05D007869 1.2e-287 993.0 733 71.4
Actinidia16503 Actinidia chinensis HOM05D005929 ORTHO05D007869 2.0e-287 992.3 732 74.9
Phvul.003G244900 Phaseolus vulgaris HOM05D005929 ORTHO05D007869 2.0e-287 992.3 730 71.9
TWI09G0459 Tripterygium wilfordii HOM05D005929 ORTHO05D007869 2.2e-286 988.8 730 73.6
Glyma.17G175900 Glycine max HOM05D005929 ORTHO05D007869 2.9e-286 988.4 727 73.3
CANSAT56G1082 Cannabis sativa HOM05D005929 ORTHO05D007869 6.5e-286 987.3 732 73.6
Glyma.05G084300 Glycine max HOM05D005929 ORTHO05D007869 1.6e-284 982.6 730 72.2
Psat4g087280 Pisum sativum HOM05D005929 ORTHO05D007869 3.6e-284 981.5 729 71.3
Ca_21176_v3 Cicer arietinum L. HOM05D005929 ORTHO05D007869 6.1e-284 980.7 728 71.8
Lj4g0006502 Lotus japonicus HOM05D005929 ORTHO05D007869 8.8e-283 976.9 728 73.9
RcHm_v2.0_Chr2g0105071 Rosa chinensis HOM05D005929 ORTHO05D007869 8.8e-283 976.9 731 75.5
ClCG01G016760 Citrullus lanatus HOM05D005929 ORTHO05D007869 1.3e-281 973.0 730 72.5
Sed0025648 Sechium edule HOM05D005929 ORTHO05D007869 1.3e-281 973.0 731 71.8
TWI53G1997 Tripterygium wilfordii HOM05D005929 ORTHO05D007869 1.8e-280 969.1 730 70.5
CsaV3_6G043190 Cucumis sativus L. HOM05D005929 ORTHO05D007869 6.9e-280 967.2 728 72.0
FAN28G0152 Fragaria x ananassa HOM05D005929 ORTHO05D007869 6.9e-280 967.2 730 73.6
FAN23G0057 Fragaria x ananassa HOM05D005929 ORTHO05D007869 1.0e-278 963.4 730 73.2
FAN26G1042 Fragaria x ananassa HOM05D005929 ORTHO05D007869 2.2e-278 962.2 730 73.2
MELO3C007555.2 Cucumis melo HOM05D005929 ORTHO05D007869 5.0e-278 961.1 728 71.7
FvH4_1g15790 Fragaria vesca HOM05D005929 ORTHO05D007869 1.4e-277 959.5 730 73.7
FAN19G1416 Fragaria x ananassa HOM05D005929 ORTHO05D007869 3.2e-277 958.4 730 73.6
TAR628G1297 Trochodendron aralioides HOM05D005929 ORTHO05D007869 1.6e-276 956.1 732 71.9
Gorai.007G211400 Gossypium raimondii HOM05D005929 ORTHO05D007869 3.6e-276 954.9 730 70.7
Duzib147G0952 Durio zibethinus HOM05D005929 ORTHO05D007869 3.7e-273 944.9 730 70.7
Thecc.01G053700 Theobroma cacao HOM05D005929 ORTHO05D007869 1.8e-272 942.6 730 71.6
COL.COLO4_11392 Corchorus olitorius HOM05D005929 ORTHO05D007869 4.2e-269 931.4 734 71.0
MBI06_g04503_MAGBIO Magnolia biondii HOM05D005929 ORTHO05D007869 9.4e-269 930.2 745 70.2
Nn1g05837 Nelumbo nucifera HOM05D005929 ORTHO05D007869 4.7e-268 927.9 732 70.4
Gohir.A11G190800 Gossypium hirsutum HOM05D005929 ORTHO05D007869 1.4e-267 926.4 732 69.9
Atru.chr3.351 Acer truncatum HOM05D005929 ORTHO05D007869 1.8e-267 926.0 638 77.6
arahy.Tifrunner.gnm1.ann1.UKY0C7 Arachis hypogaea HOM05D005929 ORTHO05D007869 3.0e-267 925.2 802 65.7
Gorai.003G022900 Gossypium raimondii HOM05D005929 ORTHO05D007869 2.2e-265 919.1 729 69.0
Gohir.A02G159200 Gossypium hirsutum HOM05D005929 ORTHO05D007869 2.4e-264 915.6 730 69.0
PGR102G2065 Punica granatum HOM05D005929 ORTHO05D007869 3.1e-264 915.2 730 67.5
Gohir.D11G197600 Gossypium hirsutum HOM05D005929 ORTHO05D007869 2.6e-263 912.1 730 69.5
Gohir.D03G021300 Gossypium hirsutum HOM05D005929 ORTHO05D007869 3.5e-263 911.8 730 68.5
Lj4A143G78 Lonicera japonica HOM05D005929 ORTHO05D007869 5.0e-262 907.9 734 68.9
Cc07_g05890 Coffea canephora HOM05D005929 ORTHO05D007869 6.5e-262 907.5 729 68.0
Rhsim08G0101600 Rhododendron simsii HOM05D005929 ORTHO05D007869 1.8e-259 899.4 952 57.2
THA.LOC104821272 Tarenaya hassleriana HOM05D005929 ORTHO05D007869 3.0e-251 872.1 734 66.8
Hund13561 Selenicereus undatus HOM05D005929 ORTHO05D007869 1.7e-249 866.3 733 67.4
Eucgr.H02007 Eucalyptus grandis HOM05D005929 ORTHO05D007869 4.8e-249 864.8 735 66.5
EL10Ac6g15157 Beta vulgaris HOM05D005929 ORTHO05D007869 1.8e-248 862.8 736 67.4
PSO170G4100 Papaver somniferum HOM05D005929 ORTHO05D007869 2.0e-247 859.4 733 64.3
PSO210G3061 Papaver somniferum HOM05D005929 ORTHO05D007869 1.7e-246 856.3 733 64.3
Sc03g0001480 Simmondsia chinensis HOM05D005929 ORTHO05D007869 5.0e-246 854.7 730 64.9
MSTRG.23760 Avicennia marina HOM05D005929 ORTHO05D007869 2.8e-244 849.0 733 66.0
vmacro17944 Vaccinium macrocarpon HOM05D005929 ORTHO05D007869 4.9e-241 838.2 939 54.8
Migut.H00446 Erythranthe guttata HOM05D005929 ORTHO05D007869 6.3e-241 837.8 734 62.5
PGSC0003DMG400015776 Solanum tuberosum HOM05D005929 ORTHO05D007869 8.3e-241 837.4 730 66.3
DCAR_010904 Daucus carota HOM05D005929 ORTHO05D007869 9.2e-240 833.9 728 65.7
SGA_v2.0_scaffold15G07274 Striga asiatica HOM05D005929 ORTHO05D007869 1.0e-238 830.5 730 63.0
Nitab4.5_0010605g0010 Nicotiana tabacum HOM05D005929 ORTHO05D007869 2.3e-238 829.3 738 63.7
Solyc02g090650.4 Solanum lycopersicum HOM05D005929 ORTHO05D007869 4.3e-237 825.1 726 66.0
Sopen02g035300 Solanum pennellii HOM05D005929 ORTHO05D007869 4.3e-237 825.1 730 65.9
Peaxi162Scf00964g00160 Petunia axillaris HOM05D005929 ORTHO05D007869 9.5e-237 823.9 736 63.5
Oeu039068.2 Olea europaea HOM05D005929 ORTHO05D007869 8.0e-236 820.8 764 61.3
Aa31LG1G15360 Aethionema arabicum HOM05D005929 ORTHO05D007869 1.7e-233 813.1 780 61.0
CAN.G836.71 Capsicum annuum HOM05D005929 ORTHO05D007869 1.1e-232 810.4 730 64.5
Lsat_1_v5_gn_4_168021 Lactuca sativa HOM05D005929 ORTHO05D007869 7.8e-231 804.3 720 64.7
HanXRQChr15g0490721 Helianthus annuus HOM05D005929 ORTHO05D007869 6.6e-230 801.2 728 63.5
Sp2g29870 Schrenkiella parvula HOM05D005929 ORTHO05D007869 1.2e-228 797.0 738 60.8
ECA232G2456 Erigeron canadensis HOM05D005929 ORTHO05D007869 2.8e-228 795.8 732 63.1
Nitab4.5_0000310g0090 Nicotiana tabacum HOM05D005929 ORTHO05D007869 1.1e-227 793.9 740 62.6
Thhalv10003742m.g Eutrema salsugineum HOM05D005929 ORTHO05D007869 4.4e-226 788.5 738 60.0
AL8G44640 Arabidopsis lyrata HOM05D005929 ORTHO05D007869 3.5e-223 778.9 738 61.5
Aqoxy5G01270 Aquilegia oxysepala HOM05D005929 ORTHO05D007869 7.3e-221 771.2 720 62.1
Carub.0008s2770 Capsella rubella HOM05D005929 ORTHO05D007869 9.5e-221 770.8 736 62.0
ATR0100G001 Amborella trichopoda HOM05D005929 ORTHO05D007869 8.1e-220 767.7 735 59.0
HPP92_009382 Vanilla planifolia HOM05D005929 ORTHO05D007869 1.1e-219 767.3 730 60.5
Ca_22183_v3 Cicer arietinum L. HOM05D005929 ORTHO05D007869 4.0e-219 765.4 570 71.2
BraA07t29438Z Brassica rapa HOM05D005929 ORTHO05D007869 8.3e-217 757.7 739 58.7
C07p24970 Brassica napus HOM05D005929 ORTHO05D007869 4.6e-215 751.9 739 58.5
A07p17110 Brassica napus HOM05D005929 ORTHO05D007869 7.8e-215 751.1 740 58.5
BcaC06g34750 Brassica carinata HOM05D005929 ORTHO05D007869 3.0e-214 749.2 739 58.3
Cpa.g.sc55.172 Carica papaya HOM05D005929 ORTHO05D007869 3.0e-214 749.2 555 73.2
Hma1.2p1_0200F.1_g086000 Hydrangea macrophylla HOM05D005929 ORTHO05D007869 6.6e-214 748.0 590 71.5
BcaB02g09988 Brassica carinata HOM05D005929 ORTHO05D007869 1.5e-210 736.9 740 57.7
BolC7t43027H Brassica oleracea HOM05D005929 ORTHO05D007869 2.0e-210 736.5 763 56.5
AUR62003860 Chenopodium quinoa HOM05D005929 ORTHO05D007869 1.6e-204 716.8 626 62.9
unitig_899.g14965 Utricularia gibba HOM05D005929 ORTHO05D007869 3.1e-203 712.6 761 56.9
Os10g0382300 Oryza sativa ssp. japonica HOM05D005929 ORTHO05D007869 2.6e-202 709.5 734 57.2
Zm00001eb223840 Zea mays HOM05D005929 ORTHO05D007869 5.8e-202 708.4 732 57.5
Lalb_Chr09g0333751 Lupinus albus HOM05D005929 ORTHO05D007869 2.2e-201 706.4 537 69.1
AUR62001947 Chenopodium quinoa HOM05D005929 ORTHO05D007869 4.9e-201 705.3 621 62.0
Duzib264G1189 Durio zibethinus HOM05D005929 ORTHO05D007869 4.6e-199 698.7 726 56.6
Haze_15421 Corylus avellana HOM05D005929 ORTHO05D007869 1.4e-195 687.2 465 81.3
Ah.03g144730 Amaranthus hybridus HOM05D005929 ORTHO05D007869 1.0e-174 617.8 603 60.9
CARHR280890 Cardamine hirsuta HOM05D005929 ORTHO05D007869 3.4e-170 602.8 601 57.7
AT5G66810 Arabidopsis thaliana HOM05D005929 ORTHO05D007869 5.5e-160 568.9 526 63.5
Pp3c4_14260 Physcomitrium patens HOM05D005929 ORTHO05D007869 7.0e-131 472.2 781 41.1
Mapoly0148s0013 Marchantia polymorpha HOM05D005929 ORTHO05D007869 5.9e-130 469.2 812 39.5
SMO116G0373 Selaginella moellendorffii HOM05D005929 ORTHO05D007869 2.1e-106 391.0 731 36.4
SalBow1G6022 Salvia bowleyana HOM05D005929 ORTHO05D007869 1.1e-102 378.6 306 66.0
CDE10G0678 Ceratophyllum demersum HOM05D005929 ORTHO05D007869 3.9e-97 360.1 280 66.4
CDE10G0504 Ceratophyllum demersum HOM05D005929 ORTHO05D007869 7.1e-91 339.3 448 48.2
Hma1.2p1_0200F.1_g086010 Hydrangea macrophylla HOM05D005929 ORTHO05D007869 4.6e-90 336.7 312 63.8
SEGI_10908 Sequoiadendron giganteum HOM05D005929 ORTHO05D000002 3.5e-82 310.5 434 46.8
Dinv29975 Davidia involucrata HOM05D005929 ORTHO05D007869 1.2e-69 268.9 370 48.6
RcHm_v2.0_Chr7g0235891 Rosa chinensis HOM05D005929 ORTHO05D007869 2.2e-60 238.0 192 65.6
PSO782G4943 Papaver somniferum HOM05D005929 ORTHO05D007869 2.7e-58 231.1 181 68.5
DCAR_001419 Daucus carota HOM05D005929 ORTHO05D007869 4.8e-55 220.3 290 50.3
QL06p041946 Quercus lobata HOM05D005929 ORTHO05D007869 8.2e-55 219.5 143 79.0
Lalb_Chr09g0333761 Lupinus albus HOM05D005929 ORTHO05D007869 3.3e-48 197.6 163 74.2
QL06p041873 Quercus lobata HOM05D005929 ORTHO05D007869 3.7e-47 194.1 137 82.5
PSO339G4212 Papaver somniferum HOM05D005929 ORTHO05D007869 1.4e-43 182.2 154 60.4
Cpa.g.sc55.170 Carica papaya HOM05D005929 ORTHO05D007869 2.1e-42 178.3 136 78.7
MD15G1282100 Malus domestica HOM05D005929 ORTHO05D007869 5.2e-41 173.7 97 91.8
MD15G1282000 Malus domestica HOM05D005929 ORTHO05D007869 1.2e-32 146.0 107 74.8
ATR0833G001 Amborella trichopoda HOM05D005929 ORTHO05D007869 2.6e-32 144.8 136 61.8
Lsat_1_v5_gn_2_14601 Lactuca sativa HOM05D005929 ORTHO05D029973 7.2e-27 126.7 154 53.2
MBI08_g05057_MAGBIO Magnolia biondii HOM05D005929 ORTHO05D029973 1.2e-21 109.4 114 52.6
Lsat_1_v5_gn_2_40080 Lactuca sativa HOM05D005929 ORTHO05D029973 3.0e-09 68.2 119 44.5
CAN.G363.39 Capsicum annuum HOM05D005929 ORTHO05D007869 6.8e-09 67.0 120 39.2
Cre01.g029050 Chlamydomonas reinhardtii HOM05D003178 ORTHO05D003636 4.1e-06 57.8 139 32.4


User provided reference genes

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