Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003999 Carpinus fangiana HOM05D017207 ORTHO05D010689 1.2e-72 277.7 174 100.0
Haze_15424 Corylus avellana HOM05D017207 ORTHO05D010689 1.3e-42 177.9 144 86.1
CiPaw.01G021100 Carya illinoinensis HOM05D017207 ORTHO05D010689 6.5e-21 105.9 166 42.8
CiPaw.02G009200 Carya illinoinensis HOM05D017207 ORTHO05D010689 1.6e-19 101.3 151 43.0
QL06p042164 Quercus lobata HOM05D017207 ORTHO05D010689 2.7e-19 100.5 142 45.1
CiPaw.01G020800 Carya illinoinensis HOM05D017207 ORTHO05D010689 3.5e-14 83.6 171 36.8
Lj7C64T6 Lonicera japonica HOM05D009141 ORTHO05D010689 6.5e-13 79.3 129 36.4
COL.COLO4_11387 Corchorus olitorius HOM05D009141 ORTHO05D010689 1.1e-12 78.6 100 50.0
CiPaw.01G020400 Carya illinoinensis HOM05D017207 ORTHO05D010689 1.9e-12 77.8 171 35.1
Atru.chr3.366 Acer truncatum HOM05D009141 ORTHO05D010689 2.5e-12 77.4 108 43.5
Gohir.A02G159600 Gossypium hirsutum HOM05D009141 ORTHO05D010689 5.5e-12 76.3 95 49.5
Lj7C67T0 Lonicera japonica HOM05D009141 ORTHO05D010689 5.5e-12 76.3 118 37.3
Gohir.D03G020750 Gossypium hirsutum HOM05D009141 ORTHO05D010689 7.2e-12 75.9 96 44.8
Lj7C66T3 Lonicera japonica HOM05D009141 ORTHO05D010689 7.2e-12 75.9 118 37.3
Atru.chr3.363 Acer truncatum HOM05D009141 ORTHO05D010689 1.6e-11 74.7 104 41.3
Gorai.003G021900 Gossypium raimondii HOM05D009141 ORTHO05D010689 1.6e-11 74.7 96 43.8
Gohir.D03G020900 Gossypium hirsutum HOM05D009141 ORTHO05D010689 2.7e-11 73.9 95 49.5
Atru.chr3.368 Acer truncatum HOM05D009141 ORTHO05D010689 4.7e-11 73.2 98 45.9
Gohir.A02G159500 Gossypium hirsutum HOM05D009141 ORTHO05D010689 6.1e-11 72.8 95 42.1
Duzib187G1080 Durio zibethinus HOM05D009141 ORTHO05D010689 8.0e-11 72.4 175 35.4
Gorai.003G021500 Gossypium raimondii HOM05D009141 ORTHO05D010689 1.4e-10 71.6 96 42.7
Gorai.003G022600 Gossypium raimondii HOM05D009141 ORTHO05D010689 1.4e-10 71.6 95 42.1
DCAR_025722 Daucus carota HOM05D009141 ORTHO05D010689 1.8e-10 71.2 98 41.8
Gohir.D03G021033 Gossypium hirsutum HOM05D009141 ORTHO05D010689 1.8e-10 71.2 95 43.2
Gohir.D03G021066 Gossypium hirsutum HOM05D009141 ORTHO05D010689 3.9e-10 70.1 95 42.1
Gohir.D03G020500 Gossypium hirsutum HOM05D009141 ORTHO05D010689 5.2e-10 69.7 96 41.7
Duzib187G0488 Durio zibethinus HOM05D009141 ORTHO05D010689 1.5e-09 68.2 138 38.4
Gohir.A02G159550 Gossypium hirsutum HOM05D009141 ORTHO05D010689 2.6e-09 67.4 72 47.2
Gohir.D03G020400 Gossypium hirsutum HOM05D009141 ORTHO05D010689 4.4e-09 66.6 96 41.7
CiPaw.01G020600 Carya illinoinensis HOM05D017207 ORTHO05D010689 5.7e-09 66.2 146 35.6
Glyma.01G185000 Glycine max HOM05D010320 ORTHO05D012509 9.7e-09 65.5 122 36.1
Atru.chr3.371 Acer truncatum HOM05D009141 ORTHO05D010689 6.3e-08 62.8 98 40.8
Atru.chr3.383 Acer truncatum HOM05D009141 ORTHO05D010689 6.3e-08 62.8 98 40.8
Lj7C67G1 Lonicera japonica HOM05D009141 ORTHO05D010689 6.3e-08 62.8 63 47.6
MD02G1169400 Malus domestica HOM05D007434 ORTHO05D019139 6.3e-08 62.8 97 41.2
Gorai.003G022100 Gossypium raimondii HOM05D009141 ORTHO05D010689 2.4e-07 60.8 81 49.4
Duzib264G1041 Durio zibethinus HOM05D009141 ORTHO05D010689 3.1e-07 60.5 130 35.4
Lalb_Chr05g0226631 Lupinus albus HOM05D010320 ORTHO05D012509 5.3e-07 59.7 127 35.4
Prupe.7G135900 Prunus persica HOM05D007434 ORTHO05D019139 5.3e-07 59.7 107 39.3
Rhsim08G0102000 Rhododendron simsii HOM05D046142 ORTHO05D010689 7.0e-07 59.3 79 41.8
Gorai.003G022500 Gossypium raimondii HOM05D009141 ORTHO05D010689 1.2e-06 58.5 80 42.5
Manes.13G126300 Manihot esculenta HOM05D007434 ORTHO05D009541 1.2e-06 58.5 89 39.3
Manes.13G126500 Manihot esculenta HOM05D061944 ORTHO05D012940 1.2e-06 58.5 114 35.1
VMungo0251G1488 Vigna mungo HOM05D010320 ORTHO05D012509 1.2e-06 58.5 106 36.8
Lalb_Chr16g0388291 Lupinus albus HOM05D010320 ORTHO05D012509 2.6e-06 57.4 112 35.7
VMungo0251G2004 Vigna mungo HOM05D010320 ORTHO05D012509 2.6e-06 57.4 90 43.3
Gorai.003G021600 Gossypium raimondii HOM05D009141 ORTHO05D010689 4.5e-06 56.6 81 42.0
Sc03g0001440 Simmondsia chinensis HOM05D012520 ORTHO05D013638 4.5e-06 56.6 76 42.1
CDE06G1671 Ceratophyllum demersum HOM05D051429 ORTHO05D009541 5.9e-06 56.2 83 37.3
COL.COLO4_11385 Corchorus olitorius HOM05D007434 ORTHO05D009541 5.9e-06 56.2 91 38.5
Glyma.17G176500 Glycine max HOM05D007434 ORTHO05D009541 7.7e-06 55.8 85 41.2
Potri.007G041400 Populus trichocarpa HOM05D007434 ORTHO05D009541 7.7e-06 55.8 78 43.6


User provided reference genes

Program Settings