Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003998 Carpinus fangiana HOM05D006144 ORTHO05D006357 0.0e+00 2606.2 1309 100.0
Haze_15426 Corylus avellana HOM05D006144 ORTHO05D006357 0.0e+00 2488.4 1311 95.6
QL06p042250 Quercus lobata HOM05D006144 ORTHO05D006357 0.0e+00 1898.2 1341 74.6
CiPaw.01G021400 Carya illinoinensis HOM05D006144 ORTHO05D006357 0.0e+00 1865.5 1331 72.6
Atru.chr3.396 Acer truncatum HOM05D006144 ORTHO05D006357 0.0e+00 1562.0 1344 62.1
MD02G1169100 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 1495.3 1336 60.0
Prupe.7G136200 Prunus persica HOM05D006144 ORTHO05D006357 0.0e+00 1494.6 1338 60.8
MD15G1281500 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 1485.7 1335 60.0
Thecc.01G052700 Theobroma cacao HOM05D006144 ORTHO05D006357 0.0e+00 1474.1 1324 59.7
Potri.007G041300 Populus trichocarpa HOM05D006144 ORTHO05D006357 0.0e+00 1470.3 1367 59.0
Potri.005G136600 Populus trichocarpa HOM05D006144 ORTHO05D006357 0.0e+00 1469.9 1355 58.5
Duzib147G1467 Durio zibethinus HOM05D006144 ORTHO05D006357 0.0e+00 1465.3 1348 59.1
Gorai.007G053500 Gossypium raimondii HOM05D006144 ORTHO05D006357 0.0e+00 1430.2 1345 57.9
Gohir.D11G049700 Gossypium hirsutum HOM05D006144 ORTHO05D006357 0.0e+00 1426.0 1337 57.8
COL.COLO4_22183 Corchorus olitorius HOM05D006144 ORTHO05D006357 0.0e+00 1420.6 1308 58.5
Gohir.A11G046100 Gossypium hirsutum HOM05D006144 ORTHO05D006357 0.0e+00 1419.4 1332 57.4
RcHm_v2.0_Chr2g0105021 Rosa chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1413.3 1344 58.1
Manes.12G100500 Manihot esculenta HOM05D006144 ORTHO05D006357 0.0e+00 1411.4 1344 57.1
CSS0009151 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1407.1 1324 57.6
CSS0011451 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1401.7 1324 57.4
Ciclev10024721m.g Citrus clementina HOM05D006144 ORTHO05D006357 0.0e+00 1395.9 1343 57.4
FAN26G0177 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1372.8 1346 57.0
Actinidia12060 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1364.0 1330 56.2
FAN23G0857 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1359.7 1349 56.4
FvH4_1g15710 Fragaria vesca HOM05D006144 ORTHO05D006357 0.0e+00 1355.5 1347 56.5
CANSAT01G0270 Cannabis sativa HOM05D006144 ORTHO05D006357 0.0e+00 1353.6 1350 54.5
FAN19G3143 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1352.8 1347 56.4
Actinidia36503 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1350.5 1331 56.0
TWI09G0039 Tripterygium wilfordii HOM05D006144 ORTHO05D006357 0.0e+00 1330.9 1338 54.3
Dinv39873 Davidia involucrata HOM05D006144 ORTHO05D006357 0.0e+00 1326.6 1316 56.1
FAN28G0789 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1326.6 1295 57.3
Sabra07G0036900 Salix brachista HOM05D006144 ORTHO05D006357 0.0e+00 1298.1 1264 56.6
CSS0044544 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1252.7 1252 56.2
Rhsim10G0119800 Rhododendron simsii HOM05D006144 ORTHO05D006357 0.0e+00 1252.3 1326 52.8
vmacro05326 Vaccinium macrocarpon HOM05D006144 ORTHO05D006357 0.0e+00 1247.6 1450 49.7
CsaV3_6G043130 Cucumis sativus L. HOM05D006144 ORTHO05D006357 0.0e+00 1218.0 1321 51.5
Nn5g30196 Nelumbo nucifera HOM05D006144 ORTHO05D006357 0.0e+00 1217.6 1351 51.3
Dinv29969 Davidia involucrata HOM05D006144 ORTHO05D006357 0.0e+00 1209.1 1181 56.1
Hma1.2p1_0200F.1_g086100 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 0.0e+00 1208.7 1339 52.1
Nn1g05861 Nelumbo nucifera HOM05D006144 ORTHO05D006357 0.0e+00 1203.3 1361 51.7
Glyma.11G057500 Glycine max HOM05D006144 ORTHO05D006357 0.0e+00 1191.8 1306 52.3
ClCG01G016710 Citrullus lanatus HOM05D006144 ORTHO05D006357 0.0e+00 1190.6 1320 51.4
Sed0018548 Sechium edule HOM05D006144 ORTHO05D006357 0.0e+00 1189.1 1299 51.9
Cc07_g05860 Coffea canephora HOM05D006144 ORTHO05D006357 0.0e+00 1180.2 1332 49.9
Glyma.01G184700 Glycine max HOM05D006144 ORTHO05D006357 0.0e+00 1173.3 1310 52.1
Lalb_Chr16g0388301 Lupinus albus HOM05D006144 ORTHO05D006357 0.0e+00 1152.9 1312 51.1
Phvul.002G020300 Phaseolus vulgaris HOM05D006144 ORTHO05D006357 0.0e+00 1148.7 1299 50.2
MELO3C007550.2 Cucumis melo HOM05D006144 ORTHO05D006357 0.0e+00 1147.1 1195 52.5
Lj2g0024358 Lotus japonicus HOM05D006144 ORTHO05D006357 0.0e+00 1144.4 1297 50.7
VMungo1215G0092 Vigna mungo HOM05D006144 ORTHO05D006357 0.0e+00 1132.5 1305 50.1
arahy.Tifrunner.gnm1.ann1.AH11HU Arachis hypogaea HOM05D006144 ORTHO05D006357 0.0e+00 1131.7 1322 50.6
arahy.Tifrunner.gnm1.ann1.IY5EPV Arachis hypogaea HOM05D006144 ORTHO05D006357 0.0e+00 1128.2 1321 50.7
Ca_24781_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 0.0e+00 1121.7 1309 50.9
Nitab4.5_0000382g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 0.0e+00 1114.8 1333 47.1
TPR.G31101 Trifolium pratense HOM05D006144 ORTHO05D006357 0.0e+00 1114.4 1295 49.7
Nitab4.5_0001684g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 0.0e+00 1114.0 1333 47.3
Peaxi162Scf00183g00711 Petunia axillaris HOM05D006144 ORTHO05D006357 0.0e+00 1100.5 1340 47.5
PGSC0003DMG400019754 Solanum tuberosum HOM05D006144 ORTHO05D006357 0.0e+00 1084.7 1297 47.4
CAN.G11.1 Capsicum annuum HOM05D006144 ORTHO05D006357 0.0e+00 1082.4 1334 46.3
Solyc03g044620.4 Solanum lycopersicum HOM05D006144 ORTHO05D006357 0.0e+00 1079.7 1325 46.7
Sopen03g008900 Solanum pennellii HOM05D006144 ORTHO05D006357 0.0e+00 1076.6 1324 47.4
Aqoxy6G01406 Aquilegia oxysepala HOM05D006144 ORTHO05D006357 4.4e-309 1065.1 1321 46.0
Lalb_Chr09g0333701 Lupinus albus HOM05D006144 ORTHO05D006357 2.2e-308 1062.8 1309 47.1
Oeu003786.1 Olea europaea HOM05D006144 ORTHO05D006357 1.4e-307 1060.1 1235 47.9
Eucgr.H01999 Eucalyptus grandis HOM05D006144 ORTHO05D006357 2.4e-307 1059.3 1332 47.4
Psat0s3889g0080 Pisum sativum HOM05D006144 ORTHO05D006357 2.1e-303 1046.2 1305 47.2
Oeu049306.1 Olea europaea HOM05D006144 ORTHO05D006357 3.6e-295 1018.8 1265 47.5
DCAR_025720 Daucus carota HOM05D006144 ORTHO05D006357 4.4e-293 1011.9 1339 45.9
MSTRG.2895 Avicennia marina HOM05D006144 ORTHO05D006357 1.3e-292 1010.4 1336 45.2
MBI06_g08189_MAGBIO Magnolia biondii HOM05D006144 ORTHO05D006357 1.4e-286 990.3 1321 45.3
PGR102G0121 Punica granatum HOM05D006144 ORTHO05D006357 4.1e-283 978.8 1348 44.8
Migut.H00451 Erythranthe guttata HOM05D006144 ORTHO05D006357 1.5e-277 960.3 1292 44.9
Hund13563 Selenicereus undatus HOM05D006144 ORTHO05D006357 1.5e-264 917.1 1290 43.3
Oeu004869.1 Olea europaea HOM05D006144 ORTHO05D006357 4.5e-261 905.6 1343 42.1
THA.LOC104826201 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 8.4e-260 901.4 1309 42.3
Sc03g0001430 Simmondsia chinensis HOM05D006144 ORTHO05D006357 3.8e-252 875.9 1331 42.1
ATR0104G015 Amborella trichopoda HOM05D006144 ORTHO05D006357 4.8e-247 859.0 1312 41.9
EL10Ac6g15152 Beta vulgaris HOM05D006144 ORTHO05D006357 1.5e-240 837.4 1296 41.4
GSVIVG01002633001 Vitis vinifera HOM05D006144 ORTHO05D006357 6.9e-230 802.0 685 63.9
SGA_v2.0_scaffold204G41590 Striga asiatica HOM05D006144 ORTHO05D006357 2.2e-228 797.0 1317 39.3
THA.LOC104804508 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 1.5e-221 774.2 1069 43.2
HPP92_004081 Vanilla planifolia HOM05D006144 ORTHO05D006357 7.2e-219 765.4 1338 38.1
TAR381G1042 Trochodendron aralioides HOM05D006144 ORTHO05D006357 2.1e-218 763.8 709 59.1
AUR62003855 Chenopodium quinoa HOM05D006144 ORTHO05D006357 2.0e-216 757.3 1304 40.2
Ah.03g144510 Amaranthus hybridus HOM05D006144 ORTHO05D006357 1.0e-212 745.0 1283 38.3
AUR62001952 Chenopodium quinoa HOM05D006144 ORTHO05D006357 1.0e-204 718.4 1232 39.9
Cpa.g.sc55.182 Carica papaya HOM05D006144 ORTHO05D006357 4.2e-203 713.0 699 57.4
HanXRQChr14g0430551 Helianthus annuus HOM05D006144 ORTHO05D006357 4.7e-202 709.5 1296 37.5
ECA232G0891 Erigeron canadensis HOM05D006144 ORTHO05D006357 6.8e-193 679.1 1212 38.2
Lj4C140T7 Lonicera japonica HOM05D006144 ORTHO05D006357 9.8e-184 648.7 698 53.0
CDE03G0440 Ceratophyllum demersum HOM05D006144 ORTHO05D006357 2.2e-183 647.5 1232 36.8
Lj4A140T30 Lonicera japonica HOM05D006144 ORTHO05D006357 1.1e-182 645.2 646 52.8
Lsat_1_v5_gn_4_167780 Lactuca sativa HOM05D006144 ORTHO05D006357 1.4e-182 644.8 1288 35.2
Os03g0186500 Oryza sativa ssp. japonica HOM05D006144 ORTHO05D006357 1.7e-180 637.9 1232 35.5
Zm00001eb006470 Zea mays HOM05D006144 ORTHO05D006357 8.6e-180 635.6 1251 36.1
Cpa.g.sc55.178 Carica papaya HOM05D006144 ORTHO05D006357 8.3e-175 619.0 644 52.3
TAR381G0606 Trochodendron aralioides HOM05D006144 ORTHO05D006357 3.5e-165 587.0 566 55.1
PSO675G0817 Papaver somniferum HOM05D006144 ORTHO05D006357 2.5e-147 527.7 722 45.3
Ca_22186_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.9e-142 511.5 779 42.7
Psat4g089200 Pisum sativum HOM05D006144 ORTHO05D006357 2.4e-142 511.1 783 43.9
PSO541G4136 Papaver somniferum HOM05D006144 ORTHO05D006357 2.3e-132 478.0 725 42.8
HPP92_004109 Vanilla planifolia HOM05D006144 ORTHO05D006357 6.5e-127 459.9 790 36.3
Hma1.2p1_1415F.1_g282000 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 1.7e-114 418.7 667 42.4
MSTRG.23764 Avicennia marina HOM05D006144 ORTHO05D006357 6.9e-113 413.3 914 35.2
TPR.G640 Trifolium pratense HOM05D006144 ORTHO05D006357 1.6e-101 375.6 319 61.4
unitig_736.g22372 Utricularia gibba HOM05D006144 ORTHO05D006357 3.0e-100 371.3 653 37.7
Mapoly0063s0038 Marchantia polymorpha HOM05D006144 ORTHO05D006357 4.4e-99 367.5 809 32.1
Mapoly0063s0034 Marchantia polymorpha HOM05D006144 ORTHO05D006357 1.0e-92 346.3 830 29.9
SEGI_14166 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 1.0e-76 293.1 473 37.8
SEGI_17223 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 3.0e-76 291.6 900 31.4
SMO301G0037 Selaginella moellendorffii HOM05D006144 ORTHO05D006357 2.7e-64 251.9 947 26.8
AUR62039591 Chenopodium quinoa HOM05D006144 ORTHO05D006357 7.8e-48 197.2 285 41.4
Aa31LG1G15380 Aethionema arabicum HOM05D012861 ORTHO05D006357 8.9e-44 183.7 584 30.7
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 2.6e-43 182.2 291 39.2
AT5G66820 Arabidopsis thaliana HOM05D012861 ORTHO05D006357 3.4e-43 181.8 552 32.2
unitig_736.g22373 Utricularia gibba HOM05D006144 ORTHO05D006357 9.0e-36 157.1 261 33.7
Sp2g29830 Schrenkiella parvula HOM05D012861 ORTHO05D006357 1.1e-28 133.7 608 27.0
Ca_06605_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 4.0e-28 131.7 300 41.0
Ca_06861_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 4.0e-28 131.7 300 41.0
Pp3c4_25960 Physcomitrium patens HOM05D006144 ORTHO05D006357 9.0e-28 130.6 383 27.4
Dinv29968 Davidia involucrata HOM05D000370 ORTHO05D001366 1.5e-27 129.8 110 59.1
Sabra05G0109200 Salix brachista HOM05D006144 ORTHO05D006357 1.1e-25 123.6 192 45.8
AL8G44580 Arabidopsis lyrata HOM05D012861 ORTHO05D006357 6.0e-24 117.9 568 26.2
unitig_736.g22374 Utricularia gibba HOM05D006144 ORTHO05D006357 1.0e-23 117.1 215 37.2
Carub.0008s2766 Capsella rubella HOM05D012861 ORTHO05D006357 1.8e-23 116.3 488 28.9
BcaC06g34756 Brassica carinata HOM05D012861 ORTHO05D006357 3.0e-23 115.5 542 28.6
Pp3c26_5160 Physcomitrium patens HOM05D006144 ORTHO05D006357 8.7e-23 114.0 389 26.0
BolC7t43021H Brassica oleracea HOM05D012861 ORTHO05D006357 4.3e-22 111.7 542 28.4
CARHR280840 Cardamine hirsuta HOM05D012861 ORTHO05D006357 4.3e-22 111.7 538 26.0
Thhalv10004001m.g Eutrema salsugineum HOM05D012861 ORTHO05D006357 9.6e-22 110.5 550 28.7
A07p17060 Brassica napus HOM05D012861 ORTHO05D006357 2.1e-21 109.4 529 28.7
BraA07t29433Z Brassica rapa HOM05D012861 ORTHO05D006357 2.1e-21 109.4 529 28.7
CBR_g31222 Chara braunii HOM05D006144 ORTHO05D006357 4.8e-21 108.2 142 39.4
C07p24920 Brassica napus HOM05D012861 ORTHO05D006357 5.3e-20 104.8 538 27.9
MCO09G582 Micromonas commoda HOM05D006144 ORTHO05D006357 1.3e-18 100.1 369 25.5
BcaB02g09983 Brassica carinata HOM05D012861 ORTHO05D006357 2.2e-18 99.4 557 27.8
Sabra05G0109100 Salix brachista HOM05D006144 ORTHO05D006357 6.4e-18 97.8 165 40.6
TPR.G19009 Trifolium pratense HOM05D006144 ORTHO05D006357 2.1e-16 92.8 116 44.8
GSVIVG01002722001 Vitis vinifera HOM05D006144 ORTHO05D006357 1.3e-15 90.1 86 55.8
AagrBONN_evm.TU.Sc2ySwM_228.442 Anthoceros agrestis HOM05D006144 ORTHO05D006357 1.5e-14 86.7 298 25.8
Sc11g0005350 Simmondsia chinensis HOM05D006144 ORTHO05D006357 1.0e-10 73.9 130 34.6
Medtr8g079870 Medicago truncatula HOM05D006144 ORTHO05D006357 1.7e-10 73.2 80 51.2
SEGI_01818 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 3.5e-08 65.5 90 44.4
Nn6g33590 Nelumbo nucifera HOM05D052452 ORTHO05D006357 9.7e-06 57.4 107 42.1


User provided reference genes

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