Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003981 Carpinus fangiana HOM05D005799 ORTHO05D007150 1.7e-35 152.1 79 100.0
CiPaw.12G078600 Carya illinoinensis HOM05D005799 ORTHO05D007150 6.9e-24 113.6 77 77.9
Cfa011938 Carpinus fangiana HOM05D005799 ORTHO05D007150 7.6e-23 110.2 77 76.6
TWI60G1445 Tripterygium wilfordii HOM05D005799 ORTHO05D007150 4.9e-22 107.5 77 75.3
VMungo0331G1577 Vigna mungo HOM05D005799 ORTHO05D007150 1.9e-21 105.5 77 71.4
Eucgr.D01689 Eucalyptus grandis HOM05D005799 ORTHO05D007150 7.1e-21 103.6 77 74.0
Phvul.010G102500 Phaseolus vulgaris HOM05D005799 ORTHO05D007150 7.1e-21 103.6 77 70.1
Glyma.16G033100 Glycine max HOM05D005799 ORTHO05D007150 1.6e-20 102.4 77 68.8
Manes.02G004000 Manihot esculenta HOM05D005799 ORTHO05D007150 2.7e-20 101.7 76 72.4
Sc07g0010180 Simmondsia chinensis HOM05D005799 ORTHO05D007150 3.5e-20 101.3 77 72.7
TAR375G0991 Trochodendron aralioides HOM05D005799 ORTHO05D007150 4.6e-20 100.9 77 70.1
Glyma.07G067100 Glycine max HOM05D005799 ORTHO05D007150 7.8e-20 100.1 77 67.5
Potri.001G085200 Populus trichocarpa HOM05D005799 ORTHO05D007150 3.0e-19 98.2 76 69.7
Sabra01G0061800 Salix brachista HOM05D005799 ORTHO05D007150 3.0e-19 98.2 76 69.7
Ah.07g197850 Amaranthus hybridus HOM05D005799 ORTHO05D007150 3.9e-19 97.8 77 67.5
Ca_17312_v3 Cicer arietinum L. HOM05D005799 ORTHO05D007150 6.6e-19 97.1 78 69.2
Aa31LG9G11310 Aethionema arabicum HOM05D005799 ORTHO05D007150 1.5e-18 95.9 77 66.2
TPR.G32682 Trifolium pratense HOM05D005799 ORTHO05D007150 1.9e-18 95.5 78 66.7
Solyc08g066730.3 Solanum lycopersicum HOM05D005799 ORTHO05D007150 2.5e-18 95.1 77 67.5
Sopen08g020700 Solanum pennellii HOM05D005799 ORTHO05D007150 2.5e-18 95.1 77 67.5
PGSC0003DMG400004314 Solanum tuberosum HOM05D005799 ORTHO05D007150 2.5e-18 95.1 77 67.5
Thhalv10028481m.g Eutrema salsugineum HOM05D005799 ORTHO05D007150 4.3e-18 94.4 76 64.5
PSO063G0471 Papaver somniferum HOM05D005799 ORTHO05D007150 4.3e-18 94.4 77 63.6
PSO782G0762 Papaver somniferum HOM05D005799 ORTHO05D007150 4.3e-18 94.4 77 63.6
Nitab4.5_0000151g0390 Nicotiana tabacum HOM05D005799 ORTHO05D007150 7.3e-18 93.6 77 66.2
AT4G10760 Arabidopsis thaliana HOM05D005799 ORTHO05D007150 9.6e-18 93.2 76 64.5
Carub.0006s2954 Capsella rubella HOM05D005799 ORTHO05D007150 9.6e-18 93.2 76 64.5
Nn3g18897 Nelumbo nucifera HOM05D005799 ORTHO05D007150 9.6e-18 93.2 77 66.2
Psat7g010960 Pisum sativum HOM05D005799 ORTHO05D007150 9.6e-18 93.2 78 65.4
Lalb_Chr04g0259181 Lupinus albus HOM05D005799 ORTHO05D007150 1.6e-17 92.4 77 62.3
AL6G44810 Arabidopsis lyrata HOM05D005799 ORTHO05D007150 2.8e-17 91.7 76 63.2
SHI06893 Sapria himalayana HOM05D005799 ORTHO05D007150 2.8e-17 91.7 76 65.8
Nitab4.5_0000837g0110 Nicotiana tabacum HOM05D005799 ORTHO05D007150 3.6e-17 91.3 77 64.9
Cc08_g16640 Coffea canephora HOM05D005799 ORTHO05D007150 8.1e-17 90.1 78 66.7
Medtr8g104280 Medicago truncatula HOM05D005799 ORTHO05D007150 1.4e-16 89.4 78 64.1
arahy.Tifrunner.gnm1.ann1.3PG13R Arachis hypogaea HOM05D005799 ORTHO05D007150 1.8e-16 89.0 77 62.3
arahy.Tifrunner.gnm1.ann1.YTN4Z3 Arachis hypogaea HOM05D005799 ORTHO05D007150 1.8e-16 89.0 77 62.3
CARHR255850 Cardamine hirsuta HOM05D005799 ORTHO05D007150 4.0e-16 87.8 76 61.8
Sed0014517 Sechium edule HOM05D005799 ORTHO05D007150 5.3e-16 87.4 81 64.2
MBI17_g40130_MAGBIO Magnolia biondii HOM05D005799 ORTHO05D007150 6.9e-16 87.0 77 62.3
Haze_09149 Corylus avellana HOM05D005799 ORTHO05D007150 9.0e-16 86.7 77 63.6
MBI12_g03921_MAGBIO Magnolia biondii HOM05D005799 ORTHO05D007150 1.2e-15 86.3 77 62.3
Sed0010941 Sechium edule HOM05D005799 ORTHO05D007150 1.2e-15 86.3 78 62.8
unitig_748.g7543 Utricularia gibba HOM05D005799 ORTHO05D007150 1.2e-15 86.3 77 59.7
CDE07G1281 Ceratophyllum demersum HOM05D005799 ORTHO05D007150 2.6e-15 85.1 77 59.7
MD06G1116900 Malus domestica HOM05D005799 ORTHO05D007150 3.4e-15 84.7 77 63.6
CDE04G1382 Ceratophyllum demersum HOM05D005799 ORTHO05D007150 4.5e-15 84.3 77 59.7
CSS0005333 Camellia sinensis var. sinensis HOM05D005799 ORTHO05D007150 5.8e-15 84.0 77 63.6
Medtr2g099870 Medicago truncatula HOM05D005799 ORTHO05D007150 5.8e-15 84.0 79 58.2
Atru.chr9.1907 Acer truncatum HOM05D005799 ORTHO05D007150 9.9e-15 83.2 78 61.5
AUR62007039 Chenopodium quinoa HOM05D005799 ORTHO05D007150 9.9e-15 83.2 77 62.3
DCAR_006533 Daucus carota HOM05D005799 ORTHO05D007150 9.9e-15 83.2 76 60.5
CAN.G335.7 Capsicum annuum HOM05D005799 ORTHO05D007150 1.7e-14 82.4 77 59.7
Lsat_1_v5_gn_3_13660 Lactuca sativa HOM05D005799 ORTHO05D007150 1.7e-14 82.4 78 64.1
AUR62019903 Chenopodium quinoa HOM05D005799 ORTHO05D007150 2.2e-14 82.0 77 61.0
Sp6g06740 Schrenkiella parvula HOM05D005799 ORTHO05D007150 2.2e-14 82.0 76 56.6
BcaC04g21070 Brassica carinata HOM05D005799 ORTHO05D007150 3.2e-13 78.2 75 56.0
A09p28470 Brassica napus HOM05D005799 ORTHO05D007150 3.2e-13 78.2 75 56.0
C09p36040 Brassica napus HOM05D005799 ORTHO05D007150 3.2e-13 78.2 75 56.0
BolC9t56443H Brassica oleracea HOM05D005799 ORTHO05D007150 3.2e-13 78.2 75 56.0
BraA09t38412Z Brassica rapa HOM05D005799 ORTHO05D007150 3.2e-13 78.2 75 56.0
BcaB01g01512 Brassica carinata HOM05D005799 ORTHO05D007150 4.2e-13 77.8 75 56.0
HPP92_007392 Vanilla planifolia HOM05D005799 ORTHO05D007150 4.2e-13 77.8 78 55.1
Ciclev10019070m.g Citrus clementina HOM05D005799 ORTHO05D007150 1.6e-12 75.9 79 50.6
QL02p029127 Quercus lobata HOM05D005799 ORTHO05D007150 3.5e-12 74.7 77 57.1
SGA_v2.0_scaffold104G30268 Striga asiatica HOM05D005799 ORTHO05D007150 4.6e-12 74.3 77 57.1
ECA246G3622 Erigeron canadensis HOM05D005799 ORTHO05D007150 1.0e-11 73.2 78 56.4
HanXRQChr17g0534781 Helianthus annuus HOM05D005799 ORTHO05D007150 5.1e-11 70.9 78 55.1
Peaxi162Scf00161g00018 Petunia axillaris HOM05D005799 ORTHO05D007150 6.7e-11 70.5 77 51.9
THA.LOC104806452 Tarenaya hassleriana HOM05D005799 ORTHO05D007150 3.3e-10 68.2 77 50.6
Lalb_Chr10g0096751 Lupinus albus HOM05D005799 ORTHO05D007150 1.6e-09 65.9 75 50.7
EL10Ac5g12455 Beta vulgaris HOM05D005799 ORTHO05D007150 3.7e-09 64.7 77 51.9
CAN.G1079.7 Capsicum annuum HOM05D005799 ORTHO05D007150 1.1e-08 63.2 77 51.9
Rhsim02G0251100 Rhododendron simsii HOM05D005799 ORTHO05D007150 1.1e-08 63.2 77 51.9
RhsimUnG0077100 Rhododendron simsii HOM05D005799 ORTHO05D007150 1.1e-08 63.2 77 51.9
SEGI_05717 Sequoiadendron giganteum HOM05D005799 ORTHO05D007150 1.4e-08 62.8 76 50.0
Cpa.g.sc1337.1 Carica papaya HOM05D005799 ORTHO05D007150 2.4e-08 62.0 77 48.1
Oeu010742.3 Olea europaea HOM05D005799 ORTHO05D007150 2.4e-08 62.0 77 49.4
COL.COLO4_10780 Corchorus olitorius HOM05D005799 ORTHO05D007150 3.1e-08 61.6 77 46.8
Lj3g0012917 Lotus japonicus HOM05D005799 ORTHO05D007150 3.1e-08 61.6 77 46.8
CSS0012502 Camellia sinensis var. sinensis HOM05D005799 ORTHO05D007150 4.0e-08 61.2 77 49.4
PGR031G2117 Punica granatum HOM05D005799 ORTHO05D007150 1.2e-07 59.7 77 49.4
Dinv12007 Davidia involucrata HOM05D005799 ORTHO05D007150 1.5e-07 59.3 77 48.1
SGA_v2.0_scaffold36G14279 Striga asiatica HOM05D005799 ORTHO05D007150 1.5e-07 59.3 53 66.0
CANSAT21G1656 Cannabis sativa HOM05D005799 ORTHO05D007150 4.5e-07 57.8 77 45.5
Hma1.2p1_0440F.1_g153730 Hydrangea macrophylla HOM05D005799 ORTHO05D007150 5.8e-07 57.4 77 45.5
MSTRG.12196 Avicennia marina HOM05D005799 ORTHO05D007150 9.9e-07 56.6 77 46.8
vmacro11512 Vaccinium macrocarpon HOM05D005799 ORTHO05D007150 9.9e-07 56.6 77 46.8
Duzib205G1547 Durio zibethinus HOM05D005799 ORTHO05D007150 2.2e-06 55.5 77 42.9
Migut.I01141 Erythranthe guttata HOM05D005799 ORTHO05D007150 2.9e-06 55.1 77 46.8
SalBow6G6472 Salvia bowleyana HOM05D005799 ORTHO05D007150 2.9e-06 55.1 77 46.8
Lj8C201G21 Lonicera japonica HOM05D005799 ORTHO05D007150 4.9e-06 54.3 77 46.8
Os02g0672600 Oryza sativa ssp. japonica HOM05D005799 ORTHO05D007150 4.9e-06 54.3 80 42.5
Zm00001eb250310 Zea mays HOM05D005799 ORTHO05D007150 4.9e-06 54.3 79 41.8


User provided reference genes

Program Settings