Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003952 Carpinus fangiana HOM05D006991 ORTHO05D009188 0.0e+00 1324.3 647 100.0
Haze_15467 Corylus avellana HOM05D006991 ORTHO05D009188 0.0e+00 1214.5 647 93.0
QL08p049512 Quercus lobata HOM05D006991 ORTHO05D009188 0.0e+00 1083.2 650 82.6
GSVIVG01026850001 Vitis vinifera HOM05D006991 ORTHO05D009188 1.6e-283 979.2 653 74.4
Potri.002G157400 Populus trichocarpa HOM05D006991 ORTHO05D009188 2.0e-278 962.2 652 73.8
MD01G1054400 Malus domestica HOM05D006991 ORTHO05D009188 7.8e-275 950.3 637 74.6
RcHm_v2.0_Chr1g0354041 Rosa chinensis HOM05D006991 ORTHO05D009188 1.3e-274 949.5 650 73.1
FAN03G2057 Fragaria x ananassa HOM05D006991 ORTHO05D009188 6.6e-274 947.2 650 73.5
FvH4_7g13830 Fragaria vesca HOM05D006991 ORTHO05D009188 8.6e-274 946.8 650 73.7
Ciclev10019238m.g Citrus clementina HOM05D006991 ORTHO05D009188 7.3e-273 943.7 651 72.4
Prupe.2G164100 Prunus persica HOM05D006991 ORTHO05D009188 1.2e-272 943.0 651 74.2
Dinv43786 Davidia involucrata HOM05D006991 ORTHO05D009188 1.5e-270 936.0 651 72.7
Duzib138G0243 Durio zibethinus HOM05D006991 ORTHO05D009188 2.6e-270 935.3 653 72.6
CANSAT56G3382 Cannabis sativa HOM05D006991 ORTHO05D009188 1.3e-269 932.9 654 71.7
FAN06G2381 Fragaria x ananassa HOM05D006991 ORTHO05D009188 4.1e-268 927.9 688 69.5
Glyma.07G073500 Glycine max HOM05D006991 ORTHO05D009188 1.2e-267 926.4 653 71.8
Lj3g0006815 Lotus japonicus HOM05D006991 ORTHO05D009188 2.1e-267 925.6 654 71.9
FAN10G0464 Fragaria x ananassa HOM05D006991 ORTHO05D009188 2.7e-267 925.2 677 70.5
TPR.G4402 Trifolium pratense HOM05D006991 ORTHO05D009188 5.6e-265 917.5 652 70.4
COL.COLO4_12678 Corchorus olitorius HOM05D006991 ORTHO05D009188 2.8e-264 915.2 654 70.6
TWI23G0867 Tripterygium wilfordii HOM05D006991 ORTHO05D009188 4.7e-264 914.4 648 70.4
Thecc.01G363100 Theobroma cacao HOM05D006991 ORTHO05D009188 6.2e-264 914.1 649 72.1
Medtr8g031480 Medicago truncatula HOM05D006991 ORTHO05D009188 8.1e-264 913.7 654 69.7
Lalb_Chr04g0256761 Lupinus albus HOM05D006991 ORTHO05D009188 4.0e-263 911.4 657 70.0
FAN06G3007 Fragaria x ananassa HOM05D006991 ORTHO05D009188 5.2e-263 911.0 670 70.1
FAN01G0340 Fragaria x ananassa HOM05D006991 ORTHO05D009188 6.8e-263 910.6 670 70.1
Nn6g33525 Nelumbo nucifera HOM05D006991 ORTHO05D009188 1.4e-260 902.9 648 69.0
Atru.chr5.484 Acer truncatum HOM05D006991 ORTHO05D009188 1.6e-256 889.4 609 72.1
VMungo0331G1855 Vigna mungo HOM05D006991 ORTHO05D009188 1.4e-255 886.3 637 71.0
Gorai.001G170100 Gossypium raimondii HOM05D006991 ORTHO05D009188 1.4e-252 876.3 648 69.0
Gohir.D07G148700 Gossypium hirsutum HOM05D006991 ORTHO05D009188 5.4e-252 874.4 648 69.0
THA.LOC104801448 Tarenaya hassleriana HOM05D006991 ORTHO05D009188 5.6e-249 864.4 648 66.8
AT1G01770 Arabidopsis thaliana HOM05D006991 ORTHO05D009188 3.4e-246 855.1 640 67.7
DCAR_015941 Daucus carota HOM05D006991 ORTHO05D009188 3.4e-246 855.1 643 66.6
ClCG05G001680 Citrullus lanatus HOM05D006991 ORTHO05D009188 5.8e-246 854.4 653 66.8
CSS0011179 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 9.9e-246 853.6 644 67.9
Eucgr.E00177 Eucalyptus grandis HOM05D006991 ORTHO05D009188 1.3e-245 853.2 671 65.3
Lj9A581T68 Lonicera japonica HOM05D006991 ORTHO05D009188 1.7e-245 852.8 641 66.3
BolC8t52898H Brassica oleracea HOM05D006991 ORTHO05D009188 2.2e-245 852.4 650 67.1
PSO063G6634 Papaver somniferum HOM05D006991 ORTHO05D009188 2.2e-245 852.4 648 66.7
Sed0028010 Sechium edule HOM05D006991 ORTHO05D009188 3.8e-245 851.7 658 66.7
Cpa.g.sc18.226 Carica papaya HOM05D006991 ORTHO05D009188 4.9e-245 851.3 664 66.6
Gohir.A07G142900 Gossypium hirsutum HOM05D006991 ORTHO05D009188 4.9e-245 851.3 649 67.0
HanXRQChr04g0121651 Helianthus annuus HOM05D006991 ORTHO05D009188 6.4e-245 850.9 641 66.8
PGR042G0621 Punica granatum HOM05D006991 ORTHO05D009188 1.9e-244 849.4 652 64.7
AL1G10570 Arabidopsis lyrata HOM05D006991 ORTHO05D009188 2.4e-244 849.0 643 66.9
Sp1g00530 Schrenkiella parvula HOM05D006991 ORTHO05D009188 1.2e-243 846.7 643 66.4
Aa31LG1G11140 Aethionema arabicum HOM05D006991 ORTHO05D009188 3.5e-243 845.1 651 65.7
AUR62004323 Chenopodium quinoa HOM05D006991 ORTHO05D009188 7.9e-243 844.0 649 64.7
Thhalv10007047m.g Eutrema salsugineum HOM05D006991 ORTHO05D009188 1.0e-242 843.6 647 65.2
BraA09t42261Z Brassica rapa HOM05D006991 ORTHO05D009188 1.1e-241 840.1 654 65.6
MELO3C006127.2 Cucumis melo HOM05D006991 ORTHO05D009188 1.5e-241 839.7 652 65.3
Nitab4.5_0002160g0070 Nicotiana tabacum HOM05D006991 ORTHO05D009188 1.5e-241 839.7 641 66.1
Nitab4.5_0009210g0040 Nicotiana tabacum HOM05D006991 ORTHO05D009188 1.5e-241 839.7 641 66.0
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 3.3e-241 838.6 656 65.5
Aqoxy5G03423_Aqoxy5G03424 Aquilegia oxysepala HOM05D006991 ORTHO05D009188 1.6e-240 836.3 646 65.3
Rhsim07G0017800 Rhododendron simsii HOM05D006991 ORTHO05D009188 1.6e-240 836.3 635 67.9
ATR0680G083 Amborella trichopoda HOM05D006991 ORTHO05D009188 2.8e-240 835.5 656 64.3
Carub.0001s0044 Capsella rubella HOM05D006991 ORTHO05D009188 4.8e-240 834.7 645 65.1
PGSC0003DMG400000156 Solanum tuberosum HOM05D006991 ORTHO05D009188 4.8e-240 834.7 637 65.9
CAN.G78.50 Capsicum annuum HOM05D006991 ORTHO05D009188 1.8e-239 832.8 642 65.0
Lsat_1_v5_gn_7_5201 Lactuca sativa HOM05D006991 ORTHO05D009188 1.8e-239 832.8 647 66.0
Hma1.2p1_0001F.1_g001590 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 4.0e-239 831.6 641 66.0
Ah.05g176510 Amaranthus hybridus HOM05D006991 ORTHO05D009188 5.3e-239 831.2 648 64.4
Cc02_g37710 Coffea canephora HOM05D006991 ORTHO05D009188 5.3e-239 831.2 655 64.9
Peaxi162Scf00020g00011 Petunia axillaris HOM05D006991 ORTHO05D009188 1.2e-238 830.1 662 63.6
MSTRG.28216 Avicennia marina HOM05D006991 ORTHO05D009188 3.4e-238 828.6 646 64.6
CDE05G1529 Ceratophyllum demersum HOM05D006991 ORTHO05D009188 1.7e-237 826.2 643 63.6
Sopen01g038120 Solanum pennellii HOM05D006991 ORTHO05D009188 6.4e-237 824.3 644 65.2
CsaV3_3G009060 Cucumis sativus L. HOM05D006991 ORTHO05D009188 3.2e-236 822.0 642 65.3
vmacro13305 Vaccinium macrocarpon HOM05D006991 ORTHO05D009188 3.2e-236 822.0 682 62.3
CSS0000914 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 6.7e-234 814.3 635 66.1
Migut.N01431 Erythranthe guttata HOM05D006991 ORTHO05D009188 7.4e-233 810.8 643 63.3
Solyc01g094330.3 Solanum lycopersicum HOM05D006991 ORTHO05D009188 1.3e-232 810.1 672 62.9
Psat4g154080 Pisum sativum HOM05D006991 ORTHO05D009188 4.8e-232 808.1 591 68.4
Hund27298 Selenicereus undatus HOM05D006991 ORTHO05D002850 8.2e-232 807.4 650 64.2
SGA_v2.0_scaffold43G16441 Striga asiatica HOM05D006991 ORTHO05D009188 8.2e-232 807.4 642 63.1
SalBow5G3488 Salvia bowleyana HOM05D006991 ORTHO05D009188 5.3e-231 804.7 659 62.1
SalBow5G3803 Salvia bowleyana HOM05D006991 ORTHO05D009188 5.3e-231 804.7 659 62.1
ECA236G3544 Erigeron canadensis HOM05D006991 ORTHO05D009188 2.6e-230 802.4 646 63.8
Sc26g0001000 Simmondsia chinensis HOM05D006991 ORTHO05D009188 7.1e-228 794.3 645 63.9
Os07g0457300 Oryza sativa ssp. japonica HOM05D006991 ORTHO05D009188 1.9e-225 786.2 647 61.2
Zm00001eb306550 Zea mays HOM05D006991 ORTHO05D009188 1.3e-221 773.5 646 60.5
CiPaw.02G028700 Carya illinoinensis HOM05D006991 ORTHO05D009188 2.5e-220 769.2 455 81.8
EL10Ac1g00536 Beta vulgaris HOM05D006991 ORTHO05D009188 7.7e-214 747.7 648 59.7
HPP92_004979 Vanilla planifolia HOM05D006991 ORTHO05D009188 5.7e-209 731.5 640 58.8
arahy.Tifrunner.gnm1.ann1.NT7Z8Q Arachis hypogaea HOM05D006991 ORTHO05D009188 1.4e-207 726.9 651 58.7
Hma1.2p1_0001F.1_g001600 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 1.6e-203 713.4 499 70.3
Actinidia10005 Actinidia chinensis HOM05D006991 ORTHO05D009188 2.4e-191 672.9 551 63.2
unitig_748.g7107 Utricularia gibba HOM05D006991 ORTHO05D009188 7.0e-191 671.4 601 58.1
arahy.Tifrunner.gnm1.ann1.JH251T Arachis hypogaea HOM05D006991 ORTHO05D009188 3.8e-181 639.0 651 54.8
Ca_23659_v3 Cicer arietinum L. HOM05D006991 ORTHO05D009188 4.2e-180 635.6 622 55.1
Pp3c9_2540 Physcomitrium patens HOM05D006991 ORTHO05D009188 1.6e-179 633.6 624 53.0
SMO164G0214 Selaginella moellendorffii HOM05D006991 ORTHO05D009188 2.2e-176 623.2 627 52.6
Phvul.010G096000 Phaseolus vulgaris HOM05D006991 ORTHO05D009188 1.1e-167 594.3 362 79.0
MBI18_g09765_MAGBIO Magnolia biondii HOM05D006991 ORTHO05D009188 2.1e-163 580.1 509 59.1
CARHR000550 Cardamine hirsuta HOM05D006991 ORTHO05D009188 2.4e-159 566.6 429 64.3
Manes.01G259800 Manihot esculenta HOM05D006991 ORTHO05D009188 1.2e-153 547.7 336 80.1
TAR375G0043 Trochodendron aralioides HOM05D006991 ORTHO05D009188 9.5e-148 528.1 335 75.8
AagrBONN_evm.TU.Sc2ySwM_344.4948 Anthoceros agrestis HOM05D006991 ORTHO05D009188 4.6e-126 456.1 470 49.8
RcHm_v2.0_Chr1g0354021 Rosa chinensis HOM05D006991 ORTHO05D009188 7.1e-119 432.2 423 55.8
EL10Ac1g02136 Beta vulgaris HOM05D006991 ORTHO05D009188 8.2e-83 312.4 293 55.6
Sabra02G0125100 Salix brachista HOM05D006991 ORTHO05D009188 5.0e-80 303.1 194 78.4
EL10Ac3g06779 Beta vulgaris HOM05D006991 ORTHO05D009188 3.6e-70 270.4 175 69.7
QL09p021383 Quercus lobata HOM05D006991 ORTHO05D009188 1.0e-64 252.3 154 84.4
HanXRQChr01g0021681 Helianthus annuus HOM05D006991 ORTHO05D009188 4.4e-60 236.9 201 61.7
EL10Ac5g11247 Beta vulgaris HOM05D006991 ORTHO05D009188 6.8e-53 213.0 190 55.8
Ca_23662_v3 Cicer arietinum L. HOM05D006991 ORTHO05D028457 3.5e-49 200.7 159 66.0
AUR62003727 Chenopodium quinoa HOM05D001417 ORTHO05D001496 8.9e-45 186.0 127 70.9
AUR62033321 Chenopodium quinoa HOM05D006991 ORTHO05D028457 1.5e-44 185.3 160 60.6
PSO782G3099 Papaver somniferum HOM05D006991 ORTHO05D028457 1.5e-36 158.7 162 55.6
HanXRQChr01g0025441 Helianthus annuus HOM05D006991 ORTHO05D009188 4.3e-31 140.6 73 86.3
CAN.G1527.6 Capsicum annuum HOM05D006991 ORTHO05D028457 8.1e-30 136.3 107 64.5
HanXRQChr03g0092981 Helianthus annuus HOM05D006991 ORTHO05D226355 3.8e-27 127.5 111 59.5
CAN.G226.8 Capsicum annuum HOM05D006991 ORTHO05D000001 1.2e-20 105.9 63 77.8
AUR62036784 Chenopodium quinoa HOM05D006991 ORTHO05D138340 1.2e-20 105.9 77 63.6


User provided reference genes

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