Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 3.6e-233 811.2 409 100.0
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 1.3e-203 713.0 409 89.5
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 1.5e-186 656.4 422 81.8
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 1.4e-181 639.8 419 79.2
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 2.1e-169 599.4 415 75.4
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 4.7e-169 598.2 415 74.2
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 6.2e-169 597.8 415 74.2
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 2.6e-167 592.4 386 77.7
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 1.9e-165 586.3 403 75.4
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 2.4e-165 585.9 420 73.1
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 6.0e-164 581.3 418 71.3
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 6.0e-164 581.3 409 73.8
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 6.0e-164 581.3 419 71.4
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 1.0e-163 580.5 409 72.4
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 6.6e-163 577.8 409 72.6
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 6.6e-163 577.8 415 72.3
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 6.6e-163 577.8 413 71.4
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 3.3e-162 575.5 419 70.4
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 4.3e-162 575.1 418 70.6
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 7.3e-162 574.3 423 70.9
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 9.6e-162 573.9 418 70.3
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.1e-161 572.8 419 69.9
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 2.1e-161 572.8 409 72.9
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 6.2e-161 571.2 419 70.2
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 1.1e-160 570.5 417 71.2
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 1.1e-160 570.5 402 72.4
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 3.1e-160 568.9 420 69.5
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 3.1e-160 568.9 423 70.0
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 5.3e-160 568.2 408 73.3
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 2.6e-159 565.8 401 72.3
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 2.2e-158 562.8 397 72.8
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 2.9e-158 562.4 413 70.0
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 8.4e-158 560.8 406 72.4
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 2.4e-157 559.3 408 70.8
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 5.4e-157 558.1 415 70.4
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 7.1e-157 557.8 408 72.1
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 6.0e-156 554.7 407 71.3
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 6.7e-155 551.2 414 69.1
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 1.9e-154 549.7 395 71.9
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 9.6e-154 547.4 412 68.0
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 3.7e-153 545.4 401 68.6
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 4.8e-153 545.0 415 69.4
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 6.2e-153 544.7 412 68.9
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 4.0e-152 542.0 333 79.9
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 9.0e-152 540.8 411 68.9
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 2.0e-151 539.7 414 68.8
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 4.5e-151 538.5 418 67.9
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 1.7e-150 536.6 420 66.2
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 2.9e-150 535.8 410 67.8
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 1.4e-149 533.5 414 67.6
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 3.2e-149 532.3 411 69.3
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 9.3e-149 530.8 418 67.7
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 1.6e-148 530.0 404 66.1
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 2.1e-148 529.6 356 71.3
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 2.7e-148 529.3 408 65.2
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 2.7e-148 529.3 409 67.5
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 3.5e-148 528.9 356 71.1
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 3.5e-148 528.9 356 71.1
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 4.6e-148 528.5 411 68.9
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 1.3e-147 526.9 352 71.3
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 1.3e-147 526.9 407 65.1
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 1.3e-147 526.9 421 67.2
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 1.8e-147 526.6 352 71.3
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 5.1e-147 525.0 361 70.1
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 2.5e-146 522.7 423 64.3
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 2.5e-146 522.7 395 68.9
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 5.6e-146 521.5 407 64.4
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 7.4e-146 521.2 399 65.9
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 7.4e-146 521.2 399 65.9
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 1.6e-145 520.0 429 65.7
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 1.6e-145 520.0 429 66.0
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 2.8e-145 519.2 405 64.4
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 8.2e-145 517.7 405 64.0
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 1.1e-144 517.3 352 70.2
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 1.1e-144 517.3 415 65.8
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 1.8e-144 516.5 416 66.1
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 2.4e-144 516.2 406 64.5
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 3.1e-144 515.8 360 70.8
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 4.0e-144 515.4 406 65.8
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 9.0e-144 514.2 400 66.0
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 1.2e-143 513.8 406 65.0
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 1.2e-143 513.8 413 64.9
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 1.5e-143 513.5 420 65.5
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 2.6e-143 512.7 404 66.3
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 5.8e-143 511.5 480 58.5
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 1.3e-142 510.4 403 64.5
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 2.9e-142 509.2 401 64.6
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 3.8e-142 508.8 413 65.4
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 3.2e-141 505.8 332 76.5
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 1.2e-140 503.8 360 68.3
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 6.1e-140 501.5 403 63.8
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 7.9e-140 501.1 398 65.1
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 7.9e-140 501.1 415 63.6
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 1.3e-139 500.4 352 69.6
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 3.0e-139 499.2 400 63.8
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 3.9e-139 498.8 410 63.9
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 1.1e-138 497.3 400 64.2
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 1.9e-138 496.5 404 63.4
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 2.5e-138 496.1 404 63.1
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 9.7e-138 494.2 401 64.1
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 9.7e-138 494.2 334 73.4
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 1.6e-137 493.4 404 62.9
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 4.8e-137 491.9 379 66.0
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 2.4e-136 489.6 412 61.7
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 2.4e-136 489.6 335 72.8
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 6.9e-136 488.0 404 62.6
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 3.3e-130 469.2 415 59.5
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 4.8e-129 465.3 374 65.8
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 1.1e-128 464.2 333 70.3
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 6.1e-124 448.4 347 66.0
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 2.3e-123 446.4 305 71.8
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 4.1e-120 435.6 383 59.5
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 4.7e-116 422.2 358 60.6
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 7.4e-114 414.8 337 60.5
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 1.7e-113 413.7 293 71.3
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 2.2e-113 413.3 380 56.6
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 5.9e-111 405.2 355 59.7
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 1.7e-110 403.7 411 57.2
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 2.1e-108 396.7 411 54.3
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.7e-108 396.4 344 56.7
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 5.7e-106 388.7 344 55.5
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 2.1e-100 370.2 425 52.0
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 3.0e-99 366.3 339 53.4
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 5.7e-98 362.1 280 69.3
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 2.4e-96 356.7 317 53.9
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 9.2e-88 328.2 284 58.5
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.5e-77 294.3 234 69.2
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 7.3e-77 292.0 334 50.0
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 8.9e-75 285.0 331 43.5
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 1.5e-74 284.3 336 42.0
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 7.1e-72 275.4 313 45.4
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 6.6e-70 268.9 311 44.1
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 6.2e-68 262.3 293 45.7
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 2.6e-66 256.9 278 53.6
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.4e-66 256.1 322 41.0
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.4e-64 250.4 286 44.4
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.4e-64 250.4 302 41.1
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 3.2e-64 250.0 179 65.4
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 7.1e-64 248.8 313 39.3
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 3.5e-63 246.5 223 60.1
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 3.0e-62 243.4 300 40.7
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.1e-59 235.0 291 41.2
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 6.8e-59 232.3 155 79.4
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.2e-57 227.3 268 41.0
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 4.6e-55 219.5 199 59.3
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 4.8e-52 209.5 316 39.2
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 3.5e-47 193.4 153 55.6
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 6.2e-44 182.6 181 57.5
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 4.0e-43 179.9 143 69.2
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 9.9e-42 175.3 341 32.3
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.8e-41 173.3 328 31.4
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.8e-41 173.3 314 34.4
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 6.4e-41 172.6 322 32.6
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.4e-40 171.4 344 33.4
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.4e-40 170.6 311 29.6
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 7.9e-39 165.6 138 61.6
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 1.1e-37 161.8 219 40.6
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.8e-35 154.5 313 29.7
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.1e-32 145.2 320 29.4
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.3e-30 138.3 300 30.7
BcaB02g11262 Brassica carinata HOM05D003942 ORTHO05D004527 8.7e-30 135.6 119 56.3
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.8e-28 130.6 294 30.3
FAN10G3156 Fragaria x ananassa HOM05D000449 ORTHO05D004527 4.1e-27 126.7 81 80.2
Pp3c11_6680 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.5e-26 124.8 129 44.2
Oeu020564.1 Olea europaea HOM05D003942 ORTHO05D004527 3.4e-26 123.6 77 80.5
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 7.6e-26 122.5 335 28.4
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.7e-25 121.3 313 29.1
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.7e-25 121.3 315 28.9
SEGI_01331 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 5.5e-24 116.3 76 72.4
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.6e-23 113.2 219 30.1
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.1e-21 108.6 360 27.8
MCO09G357 Micromonas commoda HOM05D003942 ORTHO05D004527 9.7e-21 105.5 347 24.8
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 9.7e-21 105.5 150 36.7
PRCOL_00004398 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 7.7e-18 95.9 295 26.8
MCO01G007 Micromonas commoda HOM05D003942 ORTHO05D004527 1.7e-17 94.7 297 25.3
PSO478G4509 Papaver somniferum HOM05D003942 ORTHO05D004527 4.1e-11 73.6 62 66.1
Pp3c3_14710 Physcomitrium patens HOM05D003942 ORTHO05D004527 7.7e-10 69.3 142 32.4
Pp3c20_3390 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.5e-08 64.3 89 43.8


User provided reference genes

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