Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003936 Carpinus fangiana HOM05D006065 ORTHO05D007672 8.1e-74 280.4 151 100.0
Haze_15490 Corylus avellana HOM05D006065 ORTHO05D007672 7.4e-59 230.7 198 70.2
CiPaw.01G060100 Carya illinoinensis HOM05D006065 ORTHO05D007672 1.9e-43 179.5 152 67.8
QL08p049008 Quercus lobata HOM05D006065 ORTHO05D007672 1.4e-38 163.3 138 67.4
Atru.chr5.461 Acer truncatum HOM05D006065 ORTHO05D007672 2.2e-34 149.4 164 59.8
Dinv43807 Davidia involucrata HOM05D006065 ORTHO05D007672 2.2e-34 149.4 150 58.0
Prupe.2G168300 Prunus persica HOM05D006065 ORTHO05D007672 1.2e-32 143.7 150 56.0
CiPaw.02G030100 Carya illinoinensis HOM05D006065 ORTHO05D007672 5.9e-32 141.4 120 66.7
vmacro13279 Vaccinium macrocarpon HOM05D006065 ORTHO05D007672 7.7e-32 141.0 146 58.2
Dinv32472 Davidia involucrata HOM05D006065 ORTHO05D007672 1.0e-31 140.6 158 56.3
Actinidia10016 Actinidia chinensis HOM05D006065 ORTHO05D007672 2.2e-31 139.4 153 56.2
Ciclev10022632m.g Citrus clementina HOM05D006065 ORTHO05D007672 3.8e-31 138.7 164 54.3
CANSAT56G3634 Cannabis sativa HOM05D006065 ORTHO05D007672 1.9e-30 136.3 134 58.2
Potri.014G083100 Populus trichocarpa HOM05D006065 ORTHO05D007672 4.2e-30 135.2 128 61.7
Thecc.01G360200 Theobroma cacao HOM05D006065 ORTHO05D007672 2.1e-29 132.9 144 55.6
Actinidia20914 Actinidia chinensis HOM05D006065 ORTHO05D007672 3.6e-29 132.1 135 58.5
Sabra14G0060500 Salix brachista HOM05D006065 ORTHO05D007672 4.6e-29 131.7 126 60.3
Manes.05G035300 Manihot esculenta HOM05D006065 ORTHO05D007672 3.9e-28 128.6 155 54.2
Cpa.g.sc18.247 Carica papaya HOM05D006065 ORTHO05D007672 6.7e-28 127.9 156 48.7
Sabra02G0126300 Salix brachista HOM05D006065 ORTHO05D007672 6.7e-28 127.9 125 61.6
COL.COLO4_12704 Corchorus olitorius HOM05D006065 ORTHO05D007672 1.1e-27 127.1 150 52.7
DCAR_006926 Daucus carota HOM05D006065 ORTHO05D007672 1.5e-27 126.7 148 54.7
Gohir.A08G131000 Gossypium hirsutum HOM05D006065 ORTHO05D007672 4.4e-27 125.2 134 57.5
VMungo1383G0981 Vigna mungo HOM05D006065 ORTHO05D007672 4.4e-27 125.2 140 54.3
TAR629G3005 Trochodendron aralioides HOM05D006065 ORTHO05D007672 5.7e-27 124.8 135 55.6
Oeu010611.1 Olea europaea HOM05D006065 ORTHO05D007672 1.7e-26 123.2 145 51.0
Lalb_Chr19g0127061 Lupinus albus HOM05D006065 ORTHO05D007672 2.8e-26 122.5 134 53.0
Manes.01G258100 Manihot esculenta HOM05D006065 ORTHO05D007672 2.8e-26 122.5 128 58.6
Gohir.D08G152500 Gossypium hirsutum HOM05D006065 ORTHO05D007672 8.2e-26 120.9 134 56.0
Lj1g0009386 Lotus japonicus HOM05D006065 ORTHO05D007672 8.2e-26 120.9 133 55.6
Medtr7g076690 Medicago truncatula HOM05D006065 ORTHO05D007672 1.4e-25 120.2 145 51.7
Gorai.004G158400 Gossypium raimondii HOM05D006065 ORTHO05D007672 1.8e-25 119.8 134 56.0
MBI18_g21561_MAGBIO Magnolia biondii HOM05D006065 ORTHO05D007672 2.4e-25 119.4 134 53.0
Migut.N01441 Erythranthe guttata HOM05D006065 ORTHO05D007672 6.9e-25 117.9 145 49.7
Glyma.18G230000 Glycine max HOM05D006065 ORTHO05D007672 6.9e-25 117.9 136 52.2
Glyma.09G262200 Glycine max HOM05D006065 ORTHO05D007672 1.5e-24 116.7 136 52.2
Duzib138G1923 Durio zibethinus HOM05D006065 ORTHO05D007672 2.0e-24 116.3 134 53.0
Phvul.008G067900 Phaseolus vulgaris HOM05D006065 ORTHO05D007672 2.6e-24 115.9 140 50.0
Hund16927 Selenicereus undatus HOM05D006065 ORTHO05D007672 2.6e-24 115.9 136 48.5
Gorai.007G098900 Gossypium raimondii HOM05D006065 ORTHO05D007672 3.4e-24 115.5 141 50.4
TWI59G0879 Tripterygium wilfordii HOM05D006065 ORTHO05D007672 3.4e-24 115.5 132 55.3
RcHm_v2.0_Chr1g0355101 Rosa chinensis HOM05D006065 ORTHO05D007672 4.5e-24 115.2 136 49.3
TAR374G1295 Trochodendron aralioides HOM05D006065 ORTHO05D007672 4.5e-24 115.2 146 50.0
Ca_07890_v3 Cicer arietinum L. HOM05D006065 ORTHO05D007672 1.7e-23 113.2 146 51.4
Sc01g0003370 Simmondsia chinensis HOM05D006065 ORTHO05D007672 1.7e-23 113.2 140 47.9
Duzib133G1075 Durio zibethinus HOM05D006065 ORTHO05D007672 2.2e-23 112.8 156 50.0
Hma1.2p1_0001F.1_g001420 Hydrangea macrophylla HOM05D006065 ORTHO05D007672 2.2e-23 112.8 152 51.3
arahy.Tifrunner.gnm1.ann1.QD83TI Arachis hypogaea HOM05D006065 ORTHO05D007672 2.9e-23 112.5 158 49.4
MSTRG.4858 Avicennia marina HOM05D006065 ORTHO05D007672 3.8e-23 112.1 155 45.8
SalBow3G2602 Salvia bowleyana HOM05D006065 ORTHO05D007672 8.5e-23 110.9 134 50.7
TPR.G37820 Trifolium pratense HOM05D006065 ORTHO05D007672 1.1e-22 110.5 141 53.2
FAN03G2883 Fragaria x ananassa HOM05D006065 ORTHO05D007672 1.4e-22 110.2 135 51.9
PGR031G0376 Punica granatum HOM05D006065 ORTHO05D007672 1.4e-22 110.2 138 47.1
SGA_v2.0_scaffold11G05664 Striga asiatica HOM05D006065 ORTHO05D007672 1.4e-22 110.2 159 44.7
FAN01G0390 Fragaria x ananassa HOM05D006065 ORTHO05D007672 1.9e-22 109.8 130 50.8
FvH4_7g14190 Fragaria vesca HOM05D006065 ORTHO05D007672 3.2e-22 109.0 135 51.1
MSTRG.28221 Avicennia marina HOM05D006065 ORTHO05D007672 4.2e-22 108.6 146 45.9
CsaV3_3G008970 Cucumis sativus L. HOM05D006065 ORTHO05D007672 5.5e-22 108.2 135 48.9
FAN10G0270 Fragaria x ananassa HOM05D006065 ORTHO05D007672 7.2e-22 107.8 130 52.3
FAN06G3027 Fragaria x ananassa HOM05D006065 ORTHO05D007672 9.4e-22 107.5 135 50.4
ClCG05G001580 Citrullus lanatus HOM05D006065 ORTHO05D007672 1.2e-21 107.1 132 47.7
FAN06G3847 Fragaria x ananassa HOM05D006065 ORTHO05D007672 1.2e-21 107.1 135 50.4
Sed0025321 Sechium edule HOM05D006065 ORTHO05D007672 2.7e-21 105.9 150 43.3
Aqoxy7G00322 Aquilegia oxysepala HOM05D006065 ORTHO05D007672 1.8e-20 103.2 128 48.4
Cc02_g37900 Coffea canephora HOM05D006065 ORTHO05D007672 1.8e-20 103.2 126 51.6
PGSC0003DMG400000036 Solanum tuberosum HOM05D006065 ORTHO05D007672 1.8e-20 103.2 149 45.0
TWI14G0791 Tripterygium wilfordii HOM05D006065 ORTHO05D007672 1.8e-20 103.2 131 49.6
CAN.G78.55 Capsicum annuum HOM05D006065 ORTHO05D007672 3.9e-20 102.1 137 48.9
Aa31LG5G450 Aethionema arabicum HOM05D006065 ORTHO05D007672 6.7e-20 101.3 142 45.8
Rhsim07G0016100 Rhododendron simsii HOM05D006065 ORTHO05D007672 6.7e-20 101.3 225 36.0
AT4G00525 Arabidopsis thaliana HOM05D006065 ORTHO05D007672 8.8e-20 100.9 136 46.3
arahy.Tifrunner.gnm1.ann1.WJC6IK Arachis hypogaea HOM05D006065 ORTHO05D007672 1.1e-19 100.5 189 41.8
unitig_8.g3395 Utricularia gibba HOM05D006065 ORTHO05D007672 1.1e-19 100.5 136 44.9
Psat3g110920 Pisum sativum HOM05D006065 ORTHO05D007672 4.4e-19 98.6 142 47.2
THA.LOC104817023 Tarenaya hassleriana HOM05D006065 ORTHO05D007672 4.4e-19 98.6 152 40.8
GSVIVG01018349001 Vitis vinifera HOM05D006065 ORTHO05D007672 7.4e-19 97.8 122 48.4
Nitab4.5_0001702g0100 Nicotiana tabacum HOM05D006065 ORTHO05D007672 9.7e-19 97.4 119 53.8
Lsat_1_v5_gn_7_4500 Lactuca sativa HOM05D006065 ORTHO05D007672 1.3e-18 97.1 133 51.9
SGA_v2.0_scaffold43G16421 Striga asiatica HOM05D006065 ORTHO05D007672 1.3e-18 97.1 160 42.5
Gohir.A11G088300 Gossypium hirsutum HOM05D006065 ORTHO05D007672 2.8e-18 95.9 141 45.4
Gohir.D11G092600 Gossypium hirsutum HOM05D006065 ORTHO05D007672 2.8e-18 95.9 129 45.7
Peaxi162Scf00020g00240 Petunia axillaris HOM05D006065 ORTHO05D007672 3.7e-18 95.5 126 44.4
Nitab4.5_0008002g0050 Nicotiana tabacum HOM05D006065 ORTHO05D007672 4.8e-18 95.1 124 47.6
PSO832G3783 Papaver somniferum HOM05D006065 ORTHO05D007672 4.8e-18 95.1 144 42.4
MD07G1138600 Malus domestica HOM05D006065 ORTHO05D007672 1.1e-17 94.0 118 51.7
HanXRQChr13g0426531 Helianthus annuus HOM05D006065 ORTHO05D007672 1.8e-17 93.2 148 43.9
Sp6g00560 Schrenkiella parvula HOM05D006065 ORTHO05D007672 1.8e-17 93.2 136 46.3
PGSC0003DMG400021646 Solanum tuberosum HOM05D006065 ORTHO05D007672 1.8e-17 93.2 119 48.7
Sopen05g028300 Solanum pennellii HOM05D006065 ORTHO05D007672 2.4e-17 92.8 118 49.2
EL10Ac1g00426 Beta vulgaris HOM05D006065 ORTHO05D007672 3.1e-17 92.4 110 50.0
Solyc05g049940.3 Solanum lycopersicum HOM05D006065 ORTHO05D007672 3.1e-17 92.4 118 48.3
Ah.05g180670 Amaranthus hybridus HOM05D006065 ORTHO05D007672 4.1e-17 92.0 123 44.7
GSVIVG01026900001 Vitis vinifera HOM05D006065 ORTHO05D007672 4.1e-17 92.0 122 46.7
Thhalv10029047m.g Eutrema salsugineum HOM05D006065 ORTHO05D007672 7.0e-17 91.3 136 42.6
Sopen01g038320 Solanum pennellii HOM05D006065 ORTHO05D007672 7.0e-17 91.3 144 41.0
PSO210G7571 Papaver somniferum HOM05D006065 ORTHO05D007672 9.1e-17 90.9 142 40.1
Sed0021596 Sechium edule HOM05D006065 ORTHO05D007672 9.1e-17 90.9 133 45.1
BcaC01g06870 Brassica carinata HOM05D006065 ORTHO05D007672 2.9e-15 85.9 134 41.8
BcaNung05355 Brassica carinata HOM05D006065 ORTHO05D007672 2.9e-15 85.9 134 41.8
BolC3t16187H Brassica oleracea HOM05D006065 ORTHO05D007672 2.9e-15 85.9 134 41.8
Carub.0006s3674 Capsella rubella HOM05D006065 ORTHO05D007672 2.9e-15 85.9 133 41.4
CDE06G0574 Ceratophyllum demersum HOM05D006065 ORTHO05D007672 2.9e-15 85.9 130 42.3
A03p32140 Brassica napus HOM05D006065 ORTHO05D007672 3.8e-15 85.5 136 41.9
Oeu020560.2 Olea europaea HOM05D006065 ORTHO05D007672 3.8e-15 85.5 205 36.1
Eucgr.D02286 Eucalyptus grandis HOM05D006065 ORTHO05D007672 5.0e-15 85.1 118 47.5
BraA03t12384Z Brassica rapa HOM05D006065 ORTHO05D007672 6.5e-15 84.7 137 41.6
Nitab4.5_0005277g0010 Nicotiana tabacum HOM05D006065 ORTHO05D007672 2.1e-13 79.7 127 44.1
HPP92_008504 Vanilla planifolia HOM05D006065 ORTHO05D007672 1.0e-12 77.4 128 35.9
AL6G52950 Arabidopsis lyrata HOM05D006065 ORTHO05D007672 1.4e-12 77.0 136 40.4
CSS0003041 Camellia sinensis var. sinensis HOM05D006065 ORTHO05D007672 5.2e-12 75.1 183 36.1
SEGI_06767 Sequoiadendron giganteum HOM05D006065 ORTHO05D007672 2.0e-11 73.2 129 35.7
CDE02G4271 Ceratophyllum demersum HOM05D000667 ORTHO05D009057 3.1e-09 65.9 97 45.4
Os04g0558500 Oryza sativa ssp. japonica HOM05D006065 ORTHO05D007672 1.2e-08 63.9 127 34.6
AUR62004346 Chenopodium quinoa HOM05D006065 ORTHO05D007672 1.6e-08 63.5 90 43.3
Nn1g01520 Nelumbo nucifera HOM05D006065 ORTHO05D007672 1.6e-08 63.5 95 45.3
AL1G10640 Arabidopsis lyrata HOM05D006065 ORTHO05D007672 7.7e-08 61.2 136 33.1
AT1G01715 Arabidopsis thaliana HOM05D006065 ORTHO05D007672 1.0e-07 60.8 141 31.2
Potri.002G159100 Populus trichocarpa HOM05D006065 ORTHO05D007672 1.0e-07 60.8 57 61.4
MD01G1057900 Malus domestica HOM05D006065 ORTHO05D007672 1.7e-07 60.1 60 58.3
AUR62022552 Chenopodium quinoa HOM05D006065 ORTHO05D007672 2.9e-07 59.3 88 40.9
Solyc01g094510.2 Solanum lycopersicum HOM05D006065 ORTHO05D007672 3.2e-06 55.8 119 39.5
CARHR248680 Cardamine hirsuta HOM05D006065 ORTHO05D007672 5.5e-06 55.1 139 33.8
TAR375G0974 Trochodendron aralioides HOM05D006065 ORTHO05D007672 5.5e-06 55.1 72 51.4


User provided reference genes

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