Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003926 Carpinus fangiana HOM05D003460 ORTHO05D004277 4.4e-159 564.7 310 100.0
Haze_15504 Corylus avellana HOM05D003460 ORTHO05D004277 2.5e-101 372.9 246 77.6
Haze_15503 Corylus avellana HOM05D003460 ORTHO05D004277 1.2e-55 221.1 131 82.4
QL08p048825 Quercus lobata HOM05D003460 ORTHO05D004277 1.6e-55 220.7 130 82.3
Cfa003927 Carpinus fangiana HOM05D003460 ORTHO05D004277 3.5e-55 219.5 131 81.7
CANSAT56G1950 Cannabis sativa HOM05D003460 ORTHO05D004277 3.8e-54 216.1 131 79.4
Actinidia20904 Actinidia chinensis HOM05D003460 ORTHO05D004277 7.3e-53 211.8 129 79.1
TWI59G0279 Tripterygium wilfordii HOM05D003460 ORTHO05D004277 7.3e-53 211.8 173 64.7
CiPaw.01G061200 Carya illinoinensis HOM05D003460 ORTHO05D004277 9.5e-53 211.5 130 80.8
CiPaw.02G030700 Carya illinoinensis HOM05D003460 ORTHO05D004277 2.1e-52 210.3 131 79.4
Manes.05G034300 Manihot esculenta HOM05D003460 ORTHO05D004277 2.1e-52 210.3 131 77.9
Ciclev10018441m.g Citrus clementina HOM05D003460 ORTHO05D004277 2.8e-52 209.9 130 77.7
FvH4_7g14270 Fragaria vesca HOM05D003460 ORTHO05D004277 2.8e-52 209.9 131 75.6
FAN03G0059 Fragaria x ananassa HOM05D003460 ORTHO05D004277 2.8e-52 209.9 131 75.6
FAN06G0746 Fragaria x ananassa HOM05D003460 ORTHO05D004277 2.8e-52 209.9 131 75.6
FAN10G2005 Fragaria x ananassa HOM05D003460 ORTHO05D004277 2.8e-52 209.9 131 75.6
Dinv43816 Davidia involucrata HOM05D003460 ORTHO05D004277 3.6e-52 209.5 131 77.1
Manes.01G256801 Manihot esculenta HOM05D003460 ORTHO05D004277 6.1e-52 208.8 131 76.3
Actinidia10010 Actinidia chinensis HOM05D003460 ORTHO05D004277 1.4e-51 207.6 129 77.5
RcHm_v2.0_Chr1g0355261 Rosa chinensis HOM05D003460 ORTHO05D004277 1.4e-51 207.6 131 75.6
FAN10G1682 Fragaria x ananassa HOM05D003460 ORTHO05D004277 1.8e-51 207.2 131 74.8
GSVIVG01026933001 Vitis vinifera HOM05D003460 ORTHO05D004277 1.8e-51 207.2 130 78.5
Rhsim07G0015100 Rhododendron simsii HOM05D003460 ORTHO05D004277 2.3e-51 206.8 131 74.8
arahy.Tifrunner.gnm1.ann1.T9PB4Q Arachis hypogaea HOM05D003460 ORTHO05D004277 4.0e-51 206.1 129 77.5
Peaxi162Scf00020g00327 Petunia axillaris HOM05D003460 ORTHO05D004277 5.2e-51 205.7 131 76.3
MSTRG.17267 Avicennia marina HOM05D003460 ORTHO05D004277 6.8e-51 205.3 130 76.2
vmacro13290 Vaccinium macrocarpon HOM05D003460 ORTHO05D004277 6.8e-51 205.3 131 74.8
Medtr7g077700 Medicago truncatula HOM05D003460 ORTHO05D004277 8.9e-51 204.9 131 75.6
Dinv32483 Davidia involucrata HOM05D003460 ORTHO05D004277 1.2e-50 204.5 130 75.4
Lj1g0005367 Lotus japonicus HOM05D003460 ORTHO05D004277 1.5e-50 204.1 125 79.2
VMungo1383G3436 Vigna mungo HOM05D003460 ORTHO05D004277 1.5e-50 204.1 128 77.3
Glyma.09G259400 Glycine max HOM05D003460 ORTHO05D004277 2.0e-50 203.8 128 77.3
Thecc.01G359000 Theobroma cacao HOM05D003460 ORTHO05D004277 2.6e-50 203.4 130 75.4
arahy.Tifrunner.gnm1.ann1.H3LZVP Arachis hypogaea HOM05D003460 ORTHO05D004277 3.4e-50 203.0 129 76.7
Psat3g108400 Pisum sativum HOM05D003460 ORTHO05D004277 3.4e-50 203.0 127 76.4
Phvul.008G142400 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 4.4e-50 202.6 128 76.6
Sed0006269 Sechium edule HOM05D003460 ORTHO05D004277 5.8e-50 202.2 131 74.0
Cc02_g38020 Coffea canephora HOM05D003460 ORTHO05D004277 7.5e-50 201.8 131 74.8
Gohir.D11G093200 Gossypium hirsutum HOM05D003460 ORTHO05D004277 7.5e-50 201.8 130 76.2
Gorai.007G099500 Gossypium raimondii HOM05D003460 ORTHO05D004277 7.5e-50 201.8 130 76.2
Nitab4.5_0000583g0090 Nicotiana tabacum HOM05D003460 ORTHO05D004277 7.5e-50 201.8 131 76.3
COL.COLO4_12713 Corchorus olitorius HOM05D003460 ORTHO05D004277 9.8e-50 201.4 130 74.6
Nitab4.5_0000885g0020 Nicotiana tabacum HOM05D003460 ORTHO05D004277 9.8e-50 201.4 131 75.6
Migut.N01446 Erythranthe guttata HOM05D003460 ORTHO05D004277 1.3e-49 201.1 131 74.0
MD07G1137100 Malus domestica HOM05D003460 ORTHO05D004277 1.3e-49 201.1 130 73.1
CSS0048858 Camellia sinensis var. sinensis HOM05D003460 ORTHO05D004277 1.7e-49 200.7 132 75.0
Ca_07919_v3 Cicer arietinum L. HOM05D003460 ORTHO05D004277 2.2e-49 200.3 128 75.8
Gorai.008G121300 Gossypium raimondii HOM05D003460 ORTHO05D004277 2.2e-49 200.3 130 73.1
CSS0010662 Camellia sinensis var. sinensis HOM05D003460 ORTHO05D004277 4.9e-49 199.1 125 76.8
MELO3C006109.2 Cucumis melo HOM05D002082 ORTHO05D002130 6.4e-49 198.7 131 73.3
CsaV3_3G008910 Cucumis sativus L. HOM05D003460 ORTHO05D004277 6.4e-49 198.7 131 73.3
Duzib133G1367 Durio zibethinus HOM05D003460 ORTHO05D004277 6.4e-49 198.7 165 62.4
Oeu053747.5 Olea europaea HOM05D003460 ORTHO05D004277 6.4e-49 198.7 130 72.3
CAN.G78.79 Capsicum annuum HOM05D003460 ORTHO05D004277 8.3e-49 198.4 131 74.8
Nn1g01533 Nelumbo nucifera HOM05D003460 ORTHO05D004277 8.3e-49 198.4 131 73.3
Prupe.2G170500 Prunus persica HOM05D003460 ORTHO05D004277 1.1e-48 198.0 130 72.3
Aqoxy7G00308 Aquilegia oxysepala HOM05D003460 ORTHO05D004277 1.8e-48 197.2 131 71.8
ClCG05G001530 Citrullus lanatus HOM05D003460 ORTHO05D004277 1.8e-48 197.2 131 72.5
TPR.G37789 Trifolium pratense HOM05D003460 ORTHO05D004277 1.8e-48 197.2 128 75.0
Lalb_Chr04g0256941 Lupinus albus HOM05D003460 ORTHO05D004277 2.4e-48 196.8 129 75.2
TAR636G2440 Trochodendron aralioides HOM05D003460 ORTHO05D004277 2.4e-48 196.8 131 74.0
ATR0680G344 Amborella trichopoda HOM05D003460 ORTHO05D004277 4.1e-48 196.1 129 74.4
Sabra02G0126900 Salix brachista HOM05D003460 ORTHO05D004277 4.1e-48 196.1 170 61.8
Duzib268G1202 Durio zibethinus HOM05D003460 ORTHO05D004277 5.4e-48 195.7 130 73.1
Nn6g33423 Nelumbo nucifera HOM05D003460 ORTHO05D004277 5.4e-48 195.7 131 72.5
Potri.002G159900 Populus trichocarpa HOM05D003460 ORTHO05D004277 7.0e-48 195.3 131 71.8
Medtr8g030800 Medicago truncatula HOM05D003460 ORTHO05D004277 9.2e-48 194.9 125 76.0
Glyma.03G009200 Glycine max HOM05D003460 ORTHO05D004277 1.2e-47 194.5 128 74.2
Atru.chr5.497 Acer truncatum HOM05D003460 ORTHO05D004277 2.0e-47 193.7 132 72.0
Lalb_Chr17g0339611 Lupinus albus HOM05D003460 ORTHO05D004277 2.0e-47 193.7 129 75.2
Potri.014G084500 Populus trichocarpa HOM05D003460 ORTHO05D004277 2.0e-47 193.7 126 77.0
Ca_23633_v3 Cicer arietinum L. HOM05D003460 ORTHO05D004277 2.7e-47 193.4 128 74.2
Sed0017726 Sechium edule HOM05D003460 ORTHO05D004277 2.7e-47 193.4 131 70.2
Lj3g0003387 Lotus japonicus HOM05D003460 ORTHO05D004277 3.5e-47 193.0 128 74.2
EL10Ac1g00416 Beta vulgaris HOM05D003460 ORTHO05D004277 4.6e-47 192.6 130 72.3
PSO782G4956 Papaver somniferum HOM05D003460 ORTHO05D004277 4.6e-47 192.6 129 72.9
Sabra14G0061300 Salix brachista HOM05D003460 ORTHO05D004277 4.6e-47 192.6 127 76.4
Solyc01g094620.3 Solanum lycopersicum HOM05D003460 ORTHO05D004277 4.6e-47 192.6 131 72.5
Sopen01g038430 Solanum pennellii HOM05D003460 ORTHO05D004277 4.6e-47 192.6 131 72.5
HanXRQChr13g0426551 Helianthus annuus HOM05D003460 ORTHO05D004277 1.0e-46 191.4 131 69.5
MD01G1060600 Malus domestica HOM05D003460 ORTHO05D004277 1.0e-46 191.4 130 70.8
Hund27274 Selenicereus undatus HOM05D003460 ORTHO05D004277 1.0e-46 191.4 128 73.4
ECA240G3092 Erigeron canadensis HOM05D003460 ORTHO05D004277 1.3e-46 191.0 131 69.5
Eucgr.E00136 Eucalyptus grandis HOM05D003460 ORTHO05D004277 1.3e-46 191.0 129 72.1
SGA_v2.0_scaffold43G16414 Striga asiatica HOM05D003460 ORTHO05D004277 2.3e-46 190.3 125 72.8
PSO063G5861 Papaver somniferum HOM05D003460 ORTHO05D004277 3.0e-46 189.9 129 72.1
Phvul.010G099000 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 3.0e-46 189.9 128 72.7
Glyma.07G070700 Glycine max HOM05D003460 ORTHO05D004277 8.6e-46 188.3 128 72.7
AUR62022565 Chenopodium quinoa HOM05D003460 ORTHO05D004277 1.1e-45 188.0 174 57.5
Migut.O00143 Erythranthe guttata HOM05D003460 ORTHO05D004277 1.1e-45 188.0 127 70.1
Lsat_1_v5_gn_3_137161 Lactuca sativa HOM05D003460 ORTHO05D004277 1.9e-45 187.2 130 69.2
Psat4g205160 Pisum sativum HOM05D003460 ORTHO05D004277 2.5e-45 186.8 131 71.0
Ah.05g180610 Amaranthus hybridus HOM05D003460 ORTHO05D004277 5.6e-45 185.7 171 59.1
Zm00001eb404370 Zea mays HOM05D003460 ORTHO05D004277 5.6e-45 185.7 168 58.3
DCAR_008608 Daucus carota HOM05D003460 ORTHO05D004277 1.6e-44 184.1 129 67.4
Os07g0648266 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 2.8e-44 183.3 130 68.5
SGA_v2.0_scaffold11G05665 Striga asiatica HOM05D003460 ORTHO05D004277 2.8e-44 183.3 125 72.0
TPR.G8688 Trifolium pratense HOM05D003460 ORTHO05D004277 2.8e-44 183.3 128 71.1
FAN01G0910 Fragaria x ananassa HOM05D003460 ORTHO05D004277 4.7e-44 182.6 117 75.2
Glyma.18G232900 Glycine max HOM05D003460 ORTHO05D004277 6.2e-44 182.2 117 75.2
Sc23g0002910 Simmondsia chinensis HOM05D003460 ORTHO05D004277 8.0e-44 181.8 132 69.7
PGR042G0360 Punica granatum HOM05D003460 ORTHO05D004277 1.4e-43 181.0 117 73.5
HanXRQChr03g0093461 Helianthus annuus HOM05D003460 ORTHO05D004277 4.0e-43 179.5 130 66.2
Lj7C512T7 Lonicera japonica HOM05D003460 ORTHO05D004277 1.5e-42 177.6 128 68.0
THA.LOC104825837 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 7.5e-42 175.3 128 68.0
BcaB01g02251 Brassica carinata HOM05D003460 ORTHO05D004277 1.4e-40 171.0 131 66.4
THA.LOC104801439 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 2.4e-40 170.2 128 67.2
unitig_61.g26386 Utricularia gibba HOM05D003460 ORTHO05D004277 2.4e-40 170.2 131 63.4
Carub.0006s3681 Capsella rubella HOM05D003460 ORTHO05D004277 4.1e-40 169.5 131 65.6
AL6G53010 Arabidopsis lyrata HOM05D003460 ORTHO05D004277 7.0e-40 168.7 131 65.6
Thhalv10028357m.g Eutrema salsugineum HOM05D003460 ORTHO05D004277 9.2e-40 168.3 131 64.9
FAN06G4334 Fragaria x ananassa HOM05D003460 ORTHO05D004277 1.2e-39 167.9 167 55.7
Sp6g00490 Schrenkiella parvula HOM05D003460 ORTHO05D004277 1.2e-39 167.9 131 65.6
AT4G00450 Arabidopsis thaliana HOM05D003460 ORTHO05D004277 1.6e-39 167.5 131 64.9
AUR62004357 Chenopodium quinoa HOM05D003460 ORTHO05D004277 1.6e-39 167.5 116 70.7
BraA09t35713Z Brassica rapa HOM05D003460 ORTHO05D004277 4.6e-39 166.0 132 64.4
BolC9t52974H Brassica oleracea HOM05D003460 ORTHO05D004277 1.3e-38 164.5 131 64.1
A09p00470 Brassica napus HOM05D003460 ORTHO05D004277 2.3e-38 163.7 131 63.4
BcaC04g24169 Brassica carinata HOM05D003460 ORTHO05D004277 3.0e-38 163.3 131 63.4
C09p00390 Brassica napus HOM05D003460 ORTHO05D004277 3.0e-38 163.3 131 63.4
BcaB01g02164 Brassica carinata HOM05D003460 ORTHO05D004277 3.9e-38 162.9 131 62.6
BcaC01g06879 Brassica carinata HOM05D003460 ORTHO05D004277 3.9e-38 162.9 131 61.8
A03p32180 Brassica napus HOM05D003460 ORTHO05D004277 3.9e-38 162.9 131 61.8
C03p39210 Brassica napus HOM05D003460 ORTHO05D004277 3.9e-38 162.9 131 61.8
BolC3t16192H Brassica oleracea HOM05D003460 ORTHO05D004277 3.9e-38 162.9 131 61.8
VMungo0331G1375 Vigna mungo HOM05D003460 ORTHO05D004277 1.9e-37 160.6 112 70.5
unitig_0.g1263 Utricularia gibba HOM05D003460 ORTHO05D004277 6.2e-36 155.6 130 60.0
SEGI_03490 Sequoiadendron giganteum HOM05D003460 ORTHO05D004277 1.8e-35 154.1 133 57.1
BraA03t12388Z Brassica rapa HOM05D003460 ORTHO05D004277 3.1e-35 153.3 123 61.8
Lalb_Chr10g0096951 Lupinus albus HOM05D003460 ORTHO05D004277 3.4e-34 149.8 129 61.2
Aa31LG5G530 Aethionema arabicum HOM05D003460 ORTHO05D004277 4.4e-34 149.4 132 60.6
Aa31LG1G11050 Aethionema arabicum HOM05D003460 ORTHO05D004277 3.7e-33 146.4 125 59.2
MapolyY_A0045 Marchantia polymorpha HOM05D003460 ORTHO05D004277 6.4e-33 145.6 134 54.5
Mapoly0018s0023 Marchantia polymorpha HOM05D003460 ORTHO05D004277 1.9e-32 144.1 193 45.1
CDE04G0432 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 2.4e-32 143.7 93 74.2
CDE06G2505 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 5.4e-32 142.5 107 69.2
Os10g0550066 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 9.2e-32 141.7 114 63.2
HPP92_025394 Vanilla planifolia HOM05D003460 ORTHO05D004277 2.7e-31 140.2 132 58.3
Pp3c24_11620 Physcomitrium patens HOM05D003460 ORTHO05D004277 3.5e-31 139.8 128 55.5
Pp3c8_17600 Physcomitrium patens HOM05D003460 ORTHO05D004277 2.3e-30 137.1 128 54.7
SHI13450 Sapria himalayana HOM05D003460 ORTHO05D000014 1.5e-29 134.4 223 39.5
SMO147G0395 Selaginella moellendorffii HOM05D003460 ORTHO05D004277 1.4e-27 127.9 132 50.8
SalBow3G0963 Salvia bowleyana HOM05D003460 ORTHO05D004277 4.1e-24 116.3 93 60.2
AagrBONN_evm.TU.Sc2ySwM_344.2569 Anthoceros agrestis HOM05D003460 ORTHO05D004277 1.3e-22 111.3 131 45.0
Actinidia25173 Actinidia chinensis HOM05D003460 ORTHO05D004277 1.4e-19 101.3 52 86.5
Oeu052946.1 Olea europaea HOM05D003460 ORTHO05D004277 3.1e-19 100.1 57 78.9
Phvul.002G081700 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 6.9e-19 99.0 77 66.2
TAR629G2967 Trochodendron aralioides HOM05D003460 ORTHO05D004277 5.8e-18 95.9 78 66.7
CBR_g44444 Chara braunii HOM05D003460 ORTHO05D004277 7.8e-15 85.5 100 44.0
Haze_14132 Corylus avellana HOM05D002377 ORTHO05D002656 3.3e-13 80.1 55 76.4
HPP92_028275 Vanilla planifolia HOM05D003460 ORTHO05D004277 1.8e-11 74.3 55 67.3
Cfa007943 Carpinus fangiana HOM05D002377 ORTHO05D002656 3.1e-11 73.6 55 72.7
QL02p052529 Quercus lobata HOM05D002377 ORTHO05D002656 6.4e-09 65.9 57 64.9
CiPaw.03G059900 Carya illinoinensis HOM05D002377 ORTHO05D002656 2.7e-07 60.5 46 71.7
Pp3c11_14610 Physcomitrium patens HOM05D003460 ORTHO05D004277 2.7e-07 60.5 40 70.0
Zm00001eb055510 Zea mays HOM05D003460 ORTHO05D004277 1.3e-06 58.2 36 72.2
Zm00001eb382450 Zea mays HOM05D003460 ORTHO05D004277 1.3e-06 58.2 37 70.3
arahy.Tifrunner.gnm1.ann1.N0BX7Q Arachis hypogaea HOM05D003460 ORTHO05D087672 8.7e-06 55.5 55 43.6
Thecc.04G137200 Theobroma cacao HOM05D002377 ORTHO05D002656 8.7e-06 55.5 55 56.4


User provided reference genes

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