Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003905 Carpinus fangiana HOM05D005028 ORTHO05D006028 1.2e-112 409.8 208 100.0
Haze_15525 Corylus avellana HOM05D005028 ORTHO05D006028 2.0e-107 392.5 208 96.2
Haze_01381 Corylus avellana HOM05D005028 ORTHO05D006028 3.6e-88 328.6 175 94.3
CiPaw.02G032200 Carya illinoinensis HOM05D005028 ORTHO05D006028 5.9e-83 311.2 209 76.6
MD01G1065300 Malus domestica HOM05D005028 ORTHO05D006028 9.4e-73 277.3 209 68.9
QL04p053913 Quercus lobata HOM05D005028 ORTHO05D006028 1.2e-72 276.9 209 69.4
MD07G1135200 Malus domestica HOM05D005028 ORTHO05D006028 3.6e-72 275.4 198 72.2
Prupe.2G172500 Prunus persica HOM05D005028 ORTHO05D006028 6.1e-72 274.6 208 68.3
TWI23G0157 Tripterygium wilfordii HOM05D005028 ORTHO05D006028 5.2e-71 271.6 204 67.6
RcHm_v2.0_Chr1g0356151 Rosa chinensis HOM05D005028 ORTHO05D006028 5.4e-68 261.5 208 64.4
CANSAT56G0390 Cannabis sativa HOM05D005028 ORTHO05D006028 9.1e-68 260.8 207 67.6
Dinv32494 Davidia involucrata HOM05D005028 ORTHO05D006028 1.6e-67 260.0 203 64.5
TAR374G1129 Trochodendron aralioides HOM05D005028 ORTHO05D006028 4.5e-67 258.5 186 69.9
Hma1.2p1_0780F.1_g216740 Hydrangea macrophylla HOM05D005028 ORTHO05D006028 5.9e-67 258.1 208 66.3
GSVIVG01026950001 Vitis vinifera HOM05D005028 ORTHO05D006028 3.8e-66 255.4 204 65.7
ClCG05G001460 Citrullus lanatus HOM05D005028 ORTHO05D006028 5.0e-66 255.0 193 64.8
MELO3C006103.2 Cucumis melo HOM05D005028 ORTHO05D006028 1.1e-65 253.8 191 64.4
Nn1g01568 Nelumbo nucifera HOM05D005028 ORTHO05D006028 1.5e-65 253.4 207 62.3
Manes.05G033100 Manihot esculenta HOM05D005028 ORTHO05D006028 2.5e-65 252.7 209 62.7
TAR375G0288 Trochodendron aralioides HOM05D005028 ORTHO05D006028 9.5e-65 250.8 203 62.6
CsaV3_3G008850 Cucumis sativus L. HOM05D001925 ORTHO05D004257 1.2e-64 250.4 194 62.9
FvH4_7g14630 Fragaria vesca HOM05D005028 ORTHO05D006028 1.6e-64 250.0 210 61.9
FAN03G1762 Fragaria x ananassa HOM05D005028 ORTHO05D006028 1.6e-64 250.0 210 61.9
FAN06G2873 Fragaria x ananassa HOM05D005028 ORTHO05D006028 1.6e-64 250.0 210 61.9
FAN01G1655 Fragaria x ananassa HOM05D005028 ORTHO05D006028 2.1e-64 249.6 211 61.1
FAN10G3452 Fragaria x ananassa HOM05D005028 ORTHO05D006028 4.7e-64 248.4 210 61.9
FAN06G0569 Fragaria x ananassa HOM05D005028 ORTHO05D006028 6.1e-64 248.1 210 61.0
FAN10G4091 Fragaria x ananassa HOM05D005028 ORTHO05D006028 1.4e-63 246.9 210 61.4
QL04p053899 Quercus lobata HOM05D005028 ORTHO05D006028 5.2e-63 245.0 212 60.4
Actinidia10042 Actinidia chinensis HOM05D005028 ORTHO05D006028 1.2e-62 243.8 210 60.0
Potri.014G086200 Populus trichocarpa HOM05D005028 ORTHO05D006028 6.3e-61 238.0 206 60.7
Sed0007874 Sechium edule HOM05D005028 ORTHO05D006028 6.3e-61 238.0 196 58.7
Sc23g0002800 Simmondsia chinensis HOM05D005028 ORTHO05D006028 6.3e-61 238.0 206 58.3
Peaxi162Scf00008g02424 Petunia axillaris HOM05D005028 ORTHO05D006028 2.4e-60 236.1 206 58.3
vmacro13267 Vaccinium macrocarpon HOM05D005028 ORTHO05D006028 2.4e-60 236.1 211 60.2
THA.LOC104802036 Tarenaya hassleriana HOM05D005028 ORTHO05D006028 3.1e-60 235.7 191 59.7
Solyc10g012400.3 Solanum lycopersicum HOM05D005028 ORTHO05D006028 5.4e-60 235.0 197 56.9
Sopen10g006230 Solanum pennellii HOM05D005028 ORTHO05D006028 7.0e-60 234.6 197 56.9
Thecc.01G357500 Theobroma cacao HOM05D005028 ORTHO05D006028 1.6e-59 233.4 183 63.4
Actinidia20894 Actinidia chinensis HOM05D005028 ORTHO05D006028 2.0e-59 233.0 211 57.3
PGSC0003DMG400006503 Solanum tuberosum HOM05D005028 ORTHO05D006028 2.0e-59 233.0 199 56.3
Sabra14G0062500 Salix brachista HOM05D005028 ORTHO05D006028 3.5e-59 232.3 210 59.5
Nitab4.5_0002811g0020 Nicotiana tabacum HOM05D005028 ORTHO05D006028 5.9e-59 231.5 203 56.2
Oeu052955.1 Olea europaea HOM05D005028 ORTHO05D006028 5.9e-59 231.5 201 59.2
Duzib138G1785 Durio zibethinus HOM05D005028 ORTHO05D006028 7.8e-59 231.1 185 62.2
THA.LOC104817298 Tarenaya hassleriana HOM05D005028 ORTHO05D006028 1.0e-58 230.7 209 56.0
VMungo1383G1301 Vigna mungo HOM05D005028 ORTHO05D006028 1.3e-58 230.3 196 60.7
Eucgr.E00119 Eucalyptus grandis HOM05D005028 ORTHO05D006028 2.9e-58 229.2 197 60.9
Lj7A510T39 Lonicera japonica HOM05D005028 ORTHO05D006028 5.0e-58 228.4 196 59.2
Atru.chr5.513 Acer truncatum HOM05D005028 ORTHO05D006028 6.6e-58 228.0 205 58.5
EL10Ac1g00399 Beta vulgaris HOM05D005028 ORTHO05D006028 4.3e-57 225.3 201 58.2
Ah.05g180490 Amaranthus hybridus HOM05D005028 ORTHO05D006028 5.6e-57 224.9 198 56.6
CAN.G116.15 Capsicum annuum HOM05D005028 ORTHO05D006028 7.3e-57 224.6 199 55.3
Cpa.g.sc11.21 Carica papaya HOM05D005028 ORTHO05D006028 9.5e-57 224.2 197 60.4
Lj1g0018179 Lotus japonicus HOM05D005028 ORTHO05D006028 2.8e-56 222.6 199 57.8
Phvul.008G061400 Phaseolus vulgaris HOM05D005028 ORTHO05D006028 4.7e-56 221.9 196 59.7
Lalb_Chr04g0253811 Lupinus albus HOM05D005028 ORTHO05D006028 8.0e-56 221.1 205 57.6
Nitab4.5_0000386g0020 Nicotiana tabacum HOM05D005028 ORTHO05D006028 1.4e-55 220.3 203 55.2
Ca_07933_v3 Cicer arietinum L. HOM05D005028 ORTHO05D006028 1.8e-55 219.9 207 57.5
Psat3g107720 Pisum sativum HOM05D005028 ORTHO05D006028 2.3e-55 219.5 206 58.3
Glyma.18G234400 Glycine max HOM05D005028 ORTHO05D006028 3.1e-55 219.2 204 57.4
Gohir.D07G147300 Gossypium hirsutum HOM05D005028 ORTHO05D006028 4.0e-55 218.8 202 55.9
MBI18_g02833_MAGBIO Magnolia biondii HOM05D005028 ORTHO05D006028 5.2e-55 218.4 198 60.6
PGR042G1182 Punica granatum HOM05D005028 ORTHO05D006028 6.8e-55 218.0 199 59.3
Glyma.09G258300 Glycine max HOM05D005028 ORTHO05D006028 8.9e-55 217.6 204 57.4
Cc02_g38190 Coffea canephora HOM05D005028 ORTHO05D006028 1.2e-54 217.2 188 56.9
HanXRQChr16g0522391 Helianthus annuus HOM05D005028 ORTHO05D006028 1.2e-54 217.2 190 59.5
AUR62004377 Chenopodium quinoa HOM05D005028 ORTHO05D006028 1.5e-54 216.9 190 58.9
AUR62022583 Chenopodium quinoa HOM05D005028 ORTHO05D006028 2.0e-54 216.5 161 64.0
Gohir.A07G141900 Gossypium hirsutum HOM05D005028 ORTHO05D006028 2.0e-54 216.5 202 55.0
arahy.Tifrunner.gnm1.ann1.US4SCG Arachis hypogaea HOM05D005028 ORTHO05D006028 3.4e-54 215.7 183 58.5
DCAR_015106 Daucus carota HOM05D005028 ORTHO05D006028 4.4e-54 215.3 193 56.0
TPR.G37810 Trifolium pratense HOM05D005028 ORTHO05D006028 5.8e-54 214.9 203 57.1
arahy.Tifrunner.gnm1.ann1.C7F7IC Arachis hypogaea HOM05D005028 ORTHO05D006028 9.8e-54 214.2 207 54.6
arahy.Tifrunner.gnm1.ann1.EZF1CG Arachis hypogaea HOM05D005028 ORTHO05D006028 2.2e-53 213.0 183 57.9
SGA_v2.0_scaffold95G28829 Striga asiatica HOM05D005028 ORTHO05D006028 2.2e-53 213.0 203 54.7
Medtr7g077890 Medicago truncatula HOM05D005028 ORTHO05D006028 2.9e-53 212.6 205 56.1
unitig_26.g9301 Utricularia gibba HOM05D000773 ORTHO05D006028 3.7e-53 212.2 206 54.9
Rhsim07G0013700 Rhododendron simsii HOM05D005028 ORTHO05D006028 4.9e-53 211.8 191 58.1
Lsat_1_v5_gn_4_35880 Lactuca sativa HOM05D005028 ORTHO05D006028 6.4e-53 211.5 204 53.9
Nitab4.5_0000583g0210 Nicotiana tabacum HOM05D005028 ORTHO05D006028 1.9e-52 209.9 187 57.2
Ciclev10022241m.g Citrus clementina HOM05D005028 ORTHO05D006028 7.0e-52 208.0 207 51.2
DCAR_007443 Daucus carota HOM05D005028 ORTHO05D006028 7.0e-52 208.0 190 55.8
PSO210G4593 Papaver somniferum HOM05D005028 ORTHO05D006028 9.2e-52 207.6 209 54.1
PSO832G0747 Papaver somniferum HOM05D005028 ORTHO05D006028 1.2e-51 207.2 209 54.1
ECA234G2903 Erigeron canadensis HOM05D005028 ORTHO05D006028 2.0e-51 206.5 207 53.1
Migut.B01770 Erythranthe guttata HOM05D005028 ORTHO05D006028 2.0e-51 206.5 167 59.3
MSTRG.20842 Avicennia marina HOM05D005028 ORTHO05D006028 1.7e-50 203.4 203 54.2
Gorai.001G168500 Gossypium raimondii HOM05D005028 ORTHO05D006028 3.0e-50 202.6 233 48.5
HPP92_025966 Vanilla planifolia HOM05D005028 ORTHO05D006028 3.9e-50 202.2 160 61.2
ATR0680G399 Amborella trichopoda HOM05D005028 ORTHO05D006028 8.6e-50 201.1 199 53.8
Nitab4.5_0006018g0040 Nicotiana tabacum HOM05D005028 ORTHO05D006028 4.3e-49 198.7 188 55.9
CARHR141270 Cardamine hirsuta HOM05D005028 ORTHO05D006028 1.6e-48 196.8 202 54.5
AL4G45230 Arabidopsis lyrata HOM05D005028 ORTHO05D006028 6.2e-48 194.9 200 53.0
Carub.0004s2870 Capsella rubella HOM05D005028 ORTHO05D006028 2.3e-47 193.0 209 52.2
Thhalv10001635m.g Eutrema salsugineum HOM05D005028 ORTHO05D006028 3.1e-47 192.6 196 55.1
Aa31LG1G27410 Aethionema arabicum HOM05D005028 ORTHO05D006028 1.2e-46 190.7 204 52.0
Sp4g28070 Schrenkiella parvula HOM05D005028 ORTHO05D006028 9.8e-46 187.6 207 51.7
COL.COLO4_12727 Corchorus olitorius HOM05D005028 ORTHO05D006028 2.2e-45 186.4 207 49.3
CDE09G1157 Ceratophyllum demersum HOM05D005028 ORTHO05D006028 3.7e-45 185.7 184 52.2
A03p25430 Brassica napus HOM05D005028 ORTHO05D006028 1.4e-44 183.7 201 50.7
SMO203G0053 Selaginella moellendorffii HOM05D005028 ORTHO05D006028 1.9e-44 183.3 177 54.8
Os03g0148300 Oryza sativa ssp. japonica HOM05D005028 ORTHO05D006028 1.6e-43 180.3 166 53.0
Aqoxy7G00275 Aquilegia oxysepala HOM05D005028 ORTHO05D006028 3.5e-43 179.1 203 50.7
Lsat_1_v5_gn_7_18681 Lactuca sativa HOM05D005028 ORTHO05D006028 3.5e-43 179.1 180 50.6
Peaxi162Scf00020g00731 Petunia axillaris HOM05D005028 ORTHO05D006028 6.0e-43 178.3 188 51.1
BolC4t28699H Brassica oleracea HOM05D005028 ORTHO05D006028 1.3e-42 177.2 202 49.5
SalBow3G2695 Salvia bowleyana HOM05D005028 ORTHO05D006028 1.3e-42 177.2 170 53.5
C04p72030 Brassica napus HOM05D005028 ORTHO05D006028 1.7e-42 176.8 202 49.5
Lsat_1_v5_gn_7_4161 Lactuca sativa HOM05D005028 ORTHO05D006028 1.7e-42 176.8 168 53.0
Solyc01g094780.4 Solanum lycopersicum HOM05D005028 ORTHO05D006028 1.7e-42 176.8 187 49.2
AT2G46000 Arabidopsis thaliana HOM05D005028 ORTHO05D006028 2.3e-42 176.4 202 49.5
A04p34210 Brassica napus HOM05D005028 ORTHO05D006028 5.1e-42 175.3 203 48.8
BraA04t18882Z Brassica rapa HOM05D005028 ORTHO05D006028 5.1e-42 175.3 203 48.8
AagrBONN_evm.TU.Sc2ySwM_228.1428 Anthoceros agrestis HOM05D005028 ORTHO05D006028 6.6e-42 174.9 162 53.7
C03p30330 Brassica napus HOM05D005028 ORTHO05D006028 1.1e-41 174.1 209 47.8
Zm00001eb402990 Zea mays HOM05D005028 ORTHO05D006028 1.1e-41 174.1 161 52.8
Zm00001eb003870 Zea mays HOM05D005028 ORTHO05D006028 3.3e-41 172.6 164 50.6
BolC3t15383H Brassica oleracea HOM05D005028 ORTHO05D006028 4.3e-41 172.2 203 48.3
BcaC02g12158 Brassica carinata HOM05D005028 ORTHO05D006028 1.2e-40 170.6 169 53.3
HanXRQChr06g0170181 Helianthus annuus HOM05D005028 ORTHO05D006028 1.2e-40 170.6 163 50.9
PGSC0003DMG400000176 Solanum tuberosum HOM05D005028 ORTHO05D006028 1.2e-40 170.6 188 47.9
C04p06920 Brassica napus HOM05D005028 ORTHO05D006028 6.2e-40 168.3 200 48.5
BolC4t22313H Brassica oleracea HOM05D005028 ORTHO05D006028 6.2e-40 168.3 200 48.5
A05p05990 Brassica napus HOM05D005028 ORTHO05D006028 1.4e-39 167.2 200 48.0
BraA05t19562Z Brassica rapa HOM05D005028 ORTHO05D006028 1.4e-39 167.2 200 48.0
Mapoly0023s0066 Marchantia polymorpha HOM05D005028 ORTHO05D006028 3.4e-38 162.5 180 46.7
BraA03t11762Z Brassica rapa HOM05D005028 ORTHO05D006028 1.0e-34 151.0 155 53.5
BcaC01g05100 Brassica carinata HOM05D005028 ORTHO05D006028 5.1e-34 148.7 140 53.6
Manes.01G255500 Manihot esculenta HOM05D005028 ORTHO05D006028 1.5e-33 147.1 202 45.0
Pp3c14_2680 Physcomitrium patens HOM05D005028 ORTHO05D006028 3.6e-32 142.5 158 48.1
RcHm_v2.0_Chr1g0356451 Rosa chinensis HOM05D005028 ORTHO05D006028 3.1e-31 139.4 108 62.0
SEGI_06430 Sequoiadendron giganteum HOM05D005028 ORTHO05D006028 5.8e-30 135.2 150 53.3
Ciclev10006561m.g Citrus clementina HOM05D005028 ORTHO05D006028 1.2e-27 127.5 123 52.0
CANSAT25G0788 Cannabis sativa HOM05D005028 ORTHO05D006028 2.1e-27 126.7 94 68.1
A04p17020 Brassica napus HOM05D005028 ORTHO05D006028 3.3e-25 119.4 182 40.1
HanXRQChr04g0121191 Helianthus annuus HOM05D005028 ORTHO05D006028 3.3e-25 119.4 129 47.3
Cfa010782 Carpinus fangiana HOM05D005028 ORTHO05D006028 2.1e-24 116.7 57 98.2
BcaB01g03242 Brassica carinata HOM05D005028 ORTHO05D006028 1.5e-22 110.5 140 47.1
BcaC02g07785 Brassica carinata HOM05D005028 ORTHO05D006028 8.4e-21 104.8 87 55.2
BraA08t32322Z Brassica rapa HOM05D005028 ORTHO05D006028 8.4e-21 104.8 102 51.0
Cfa015721 Carpinus fangiana HOM05D001945 ORTHO05D034171 1.8e-15 87.0 42 97.6
C09p26600 Brassica napus HOM05D005028 ORTHO05D006028 2.2e-13 80.1 123 38.2
BcaC02g08371 Brassica carinata HOM05D005028 ORTHO05D006028 8.4e-13 78.2 64 56.2
CBR_g3867 Chara braunii HOM05D005028 ORTHO05D006028 3.5e-11 72.8 132 36.4
MCO07G199 Micromonas commoda HOM05D005028 ORTHO05D006028 1.1e-09 67.8 155 29.0
Atru.chr3.1868 Acer truncatum HOM05D005028 ORTHO05D006028 1.1e-07 61.2 63 47.6
Atru.chr3.1882 Acer truncatum HOM05D005028 ORTHO05D006028 1.8e-07 60.5 63 47.6
arahy.Tifrunner.gnm1.ann1.PAI5YG Arachis hypogaea HOM05D005028 ORTHO05D006028 3.1e-07 59.7 49 57.1
ECA236G3403 Erigeron canadensis HOM05D005028 ORTHO05D006028 9.0e-07 58.2 99 36.4


User provided reference genes

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