Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003897 Carpinus fangiana HOM05D004502 ORTHO05D005579 0.0e+00 1642.1 807 100.0
Haze_15535 Corylus avellana HOM05D004502 ORTHO05D005579 0.0e+00 1514.6 807 92.9
CiPaw.01G063800 Carya illinoinensis HOM05D004502 ORTHO05D005579 0.0e+00 1406.3 818 83.5
QL04p054124 Quercus lobata HOM05D004502 ORTHO05D005579 0.0e+00 1335.9 818 79.3
Potri.014G087300 Populus trichocarpa HOM05D004502 ORTHO05D005579 0.0e+00 1139.4 808 69.7
GSVIVG01027000001 Vitis vinifera HOM05D004502 ORTHO05D005579 0.0e+00 1132.1 797 70.0
Cpa.g.sc11.33 Carica papaya HOM05D004502 ORTHO05D005579 0.0e+00 1127.5 810 67.8
RcHm_v2.0_Chr1g0356801 Rosa chinensis HOM05D004502 ORTHO05D005579 0.0e+00 1121.3 828 67.0
MD07G1133800 Malus domestica HOM05D004502 ORTHO05D005579 0.0e+00 1119.4 814 67.7
TWI23G1305 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 0.0e+00 1112.8 810 67.0
Dinv32500 Davidia involucrata HOM05D004502 ORTHO05D005579 0.0e+00 1109.7 860 65.3
CANSAT56G0477 Cannabis sativa HOM05D004502 ORTHO05D005579 0.0e+00 1104.0 787 67.9
Ciclev10018851m.g Citrus clementina HOM05D004502 ORTHO05D005579 0.0e+00 1101.7 801 67.0
Atru.chr5.526 Acer truncatum HOM05D004502 ORTHO05D005579 0.0e+00 1084.7 818 64.9
Glyma.09G257000 Glycine max HOM05D004502 ORTHO05D005579 0.0e+00 1082.0 816 66.4
Gorai.004G159100 Gossypium raimondii HOM05D004502 ORTHO05D005579 0.0e+00 1080.1 817 65.7
Glyma.18G235400 Glycine max HOM05D004502 ORTHO05D005579 0.0e+00 1079.3 816 66.2
Hma1.2p1_0071F.1_g037745 Hydrangea macrophylla HOM05D004502 ORTHO05D005579 0.0e+00 1075.8 814 65.6
PGR042G2088 Punica granatum HOM05D004502 ORTHO05D005579 0.0e+00 1075.1 781 68.0
Gohir.D11G095000 Gossypium hirsutum HOM05D004502 ORTHO05D005579 5.5e-312 1074.3 814 65.2
FvH4_7g14850 Fragaria vesca HOM05D004502 ORTHO05D005579 1.1e-311 1072.8 827 64.7
Gorai.007G101400 Gossypium raimondii HOM05D004502 ORTHO05D005579 2.2e-311 1072.0 814 65.1
Eucgr.E00113 Eucalyptus grandis HOM05D004502 ORTHO05D005579 7.9e-309 1063.5 804 66.0
Duzib133G0971 Durio zibethinus HOM05D004502 ORTHO05D005579 1.0e-308 1063.1 815 65.5
Duzib138G1080 Durio zibethinus HOM05D004502 ORTHO05D005579 1.3e-308 1062.8 782 67.0
VMungo1383G3442 Vigna mungo HOM05D004502 ORTHO05D005579 4.3e-307 1057.7 798 66.2
Actinidia14191 Actinidia chinensis HOM05D004502 ORTHO05D005579 6.2e-306 1053.9 832 63.0
CsaV3_6G000710 Cucumis sativus L. HOM05D004502 ORTHO05D005579 6.2e-306 1053.9 821 63.7
TAR629G1389 Trochodendron aralioides HOM05D004502 ORTHO05D005579 2.4e-305 1052.0 812 64.5
Sabra14G0063300 Salix brachista HOM05D004502 ORTHO05D005579 3.1e-305 1051.6 798 65.7
Glyma.07G068700 Glycine max HOM05D004502 ORTHO05D005579 4.0e-305 1051.2 815 63.7
Thecc.01G356300 Theobroma cacao HOM05D004502 ORTHO05D005579 1.2e-304 1049.7 761 67.4
Manes.01G254800 Manihot esculenta HOM05D004502 ORTHO05D005579 2.6e-304 1048.5 738 70.5
Lj3g0021790 Lotus japonicus HOM05D004502 ORTHO05D005579 2.9e-303 1045.0 803 65.5
arahy.Tifrunner.gnm1.ann1.0GN1Z3 Arachis hypogaea HOM05D004502 ORTHO05D005579 2.5e-302 1042.0 826 62.6
Phvul.010G100800 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 1.2e-301 1039.6 810 64.9
Medtr8g028875 Medicago truncatula HOM05D004502 ORTHO05D005579 7.9e-301 1036.9 774 65.5
FAN01G2073 Fragaria x ananassa HOM05D004502 ORTHO05D005579 5.1e-300 1034.2 821 63.5
Sed0014632 Sechium edule HOM05D004502 ORTHO05D005579 6.7e-300 1033.9 782 63.8
arahy.Tifrunner.gnm1.ann1.V8X9PU Arachis hypogaea HOM05D004502 ORTHO05D005579 2.5e-299 1031.9 829 61.9
Nn1g01586 Nelumbo nucifera HOM05D004502 ORTHO05D005579 1.3e-298 1029.6 796 63.7
Gohir.A11G090500 Gossypium hirsutum HOM05D004502 ORTHO05D005579 6.3e-298 1027.3 782 64.5
FAN10G2351 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.4e-297 1026.2 821 62.9
VMungo0331G1775 Vigna mungo HOM05D004502 ORTHO05D005579 1.4e-297 1026.2 810 63.6
FAN06G1095 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.0e-296 1022.3 870 60.3
TPR.G37813 Trifolium pratense HOM05D004502 ORTHO05D005579 1.3e-295 1019.6 783 64.2
Psat3g107400 Pisum sativum HOM05D004502 ORTHO05D005579 1.7e-295 1019.2 809 62.7
Sed0001889 Sechium edule HOM05D004502 ORTHO05D005579 2.2e-295 1018.8 801 62.8
ClCG06G003550 Citrullus lanatus HOM05D004502 ORTHO05D005579 3.8e-295 1018.1 820 62.2
Prupe.2G173600 Prunus persica HOM05D004502 ORTHO05D005579 1.6e-293 1012.7 716 69.6
CSS0020518 Camellia sinensis var. sinensis HOM05D004502 ORTHO05D005579 2.7e-293 1011.9 758 65.6
FAN06G0667 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.8e-292 1009.2 827 62.2
Lalb_Chr17g0339421 Lupinus albus HOM05D004502 ORTHO05D005579 3.9e-292 1008.1 815 63.6
Actinidia20888 Actinidia chinensis HOM05D004502 ORTHO05D005579 8.7e-292 1006.9 775 64.0
Cc02_g38300 Coffea canephora HOM05D004502 ORTHO05D005579 1.8e-289 999.2 805 60.9
arahy.Tifrunner.gnm1.ann1.C1BLFK Arachis hypogaea HOM05D004502 ORTHO05D005579 3.4e-288 995.0 813 62.0
Rhsim07G0013000 Rhododendron simsii HOM05D004502 ORTHO05D005579 6.5e-287 990.7 823 60.8
Hund16660 Selenicereus undatus HOM05D004502 ORTHO05D005579 6.5e-287 990.7 814 60.9
Phvul.008G060500 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 1.1e-281 973.4 730 66.4
Lj9C585G14 Lonicera japonica HOM05D004502 ORTHO05D005579 5.3e-281 971.1 795 61.3
FAN10G2492 Fragaria x ananassa HOM05D004502 ORTHO05D005579 9.1e-281 970.3 821 60.5
TPR.G17909 Trifolium pratense HOM05D004502 ORTHO05D005579 1.2e-280 969.9 823 59.8
Oeu052960.2 Olea europaea HOM05D004502 ORTHO05D005579 9.4e-278 960.3 808 59.5
Peaxi162Scf00020g01028 Petunia axillaris HOM05D004502 ORTHO05D005579 1.4e-276 956.4 806 59.8
HanXRQChr17g0562371 Helianthus annuus HOM05D004502 ORTHO05D005579 3.0e-276 955.3 805 60.4
Nn6g33342 Nelumbo nucifera HOM05D004502 ORTHO05D005579 1.3e-274 949.9 748 63.1
THA.LOC104802040 Tarenaya hassleriana HOM05D004502 ORTHO05D005579 6.3e-274 947.6 811 59.7
COL.COLO4_12736 Corchorus olitorius HOM05D004502 ORTHO05D005579 4.1e-273 944.9 667 69.4
Migut.B01778 Erythranthe guttata HOM05D004502 ORTHO05D005579 4.1e-273 944.9 800 58.2
arahy.Tifrunner.gnm1.ann1.04AGHE Arachis hypogaea HOM05D004502 ORTHO05D005579 2.6e-272 942.2 813 59.7
Thhalv10001314m.g Eutrema salsugineum HOM05D004502 ORTHO05D005579 2.6e-272 942.2 775 61.7
ECA234G4483 Erigeron canadensis HOM05D004502 ORTHO05D005579 1.3e-271 939.9 775 60.4
Aa31LG1G27460 Aethionema arabicum HOM05D004502 ORTHO05D005579 1.7e-271 939.5 781 60.8
Lsat_1_v5_gn_4_34660 Lactuca sativa HOM05D004502 ORTHO05D005579 6.5e-271 937.6 783 59.5
Sp4g28120 Schrenkiella parvula HOM05D004502 ORTHO05D005579 1.6e-269 932.9 772 61.3
Gohir.D08G153200 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.0e-268 930.2 689 67.1
Sc01g0003530 Simmondsia chinensis HOM05D004502 ORTHO05D005579 4.0e-268 928.3 751 60.9
Ca_23605_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 1.5e-267 926.4 737 62.8
CARHR141310 Cardamine hirsuta HOM05D004502 ORTHO05D005579 2.0e-267 926.0 771 60.6
Ca_00829_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 3.3e-267 925.2 725 63.6
HanXRQChr06g0170231 Helianthus annuus HOM05D004502 ORTHO05D005579 3.3e-267 925.2 809 56.9
CAN.G78.100 Capsicum annuum HOM05D004502 ORTHO05D005579 1.7e-266 922.9 825 58.1
SalBow3G3684 Salvia bowleyana HOM05D004502 ORTHO05D005579 1.7e-266 922.9 770 58.7
AL4G45280 Arabidopsis lyrata HOM05D004502 ORTHO05D005579 4.8e-266 921.4 771 60.6
Solyc01g094860.4 Solanum lycopersicum HOM05D004502 ORTHO05D005579 8.2e-266 920.6 814 57.4
Carub.0004s2875 Capsella rubella HOM05D004502 ORTHO05D005579 2.0e-264 916.0 771 60.1
AT2G46060 Arabidopsis thaliana HOM05D004502 ORTHO05D005579 1.0e-263 913.7 798 58.0
Sopen01g038640 Solanum pennellii HOM05D004502 ORTHO05D005579 5.0e-263 911.4 815 57.1
AUR62004387 Chenopodium quinoa HOM05D004502 ORTHO05D005579 1.2e-261 906.7 762 58.4
vmacro13259 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 6.8e-260 901.0 762 58.5
Aqoxy7G00260 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 4.4e-259 898.3 807 56.3
A05p06020 Brassica napus HOM05D004502 ORTHO05D005579 7.5e-259 897.5 772 59.1
C04p06950 Brassica napus HOM05D004502 ORTHO05D005579 7.5e-259 897.5 775 59.1
BolC4t22316H Brassica oleracea HOM05D004502 ORTHO05D005579 7.5e-259 897.5 775 59.1
BraA05t19565Z Brassica rapa HOM05D004502 ORTHO05D005579 2.8e-258 895.6 781 58.4
MSTRG.17285 Avicennia marina HOM05D004502 ORTHO05D005579 1.0e-255 887.1 785 56.2
SGA_v2.0_scaffold95G28821 Striga asiatica HOM05D004502 ORTHO05D005579 1.7e-255 886.3 804 56.0
BraA04t18886Z Brassica rapa HOM05D004502 ORTHO05D005579 1.1e-254 883.6 779 57.6
A04p34250 Brassica napus HOM05D004502 ORTHO05D005579 1.6e-253 879.8 805 56.3
C04p72070 Brassica napus HOM05D004502 ORTHO05D005579 1.2e-251 873.6 804 55.7
Rhsim01G0146800 Rhododendron simsii HOM05D004502 ORTHO05D005579 3.4e-251 872.1 818 56.1
ECA236G0795 Erigeron canadensis HOM05D004502 ORTHO05D005579 1.3e-250 870.2 767 57.5
PGSC0003DMG400000181 Solanum tuberosum HOM05D004502 ORTHO05D005579 1.6e-248 863.2 818 54.9
PSO478G3176 Papaver somniferum HOM05D004502 ORTHO05D005579 1.3e-247 860.1 780 55.4
PSO782G3525 Papaver somniferum HOM05D004502 ORTHO05D005579 1.0e-244 850.5 774 55.4
Psat4g212960 Pisum sativum HOM05D004502 ORTHO05D005579 4.4e-235 818.5 679 58.8
vmacro20915 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 1.1e-233 813.9 627 63.8
Nitab4.5_0010258g0020 Nicotiana tabacum HOM05D004502 ORTHO05D005579 3.2e-233 812.4 755 56.3
MD01G1067200 Malus domestica HOM05D004502 ORTHO05D005579 2.6e-227 792.7 609 64.2
ATR0680G297 Amborella trichopoda HOM05D004502 ORTHO05D005579 6.8e-220 768.1 875 47.2
Os10g0446200 Oryza sativa ssp. japonica HOM05D004502 ORTHO05D005579 2.6e-219 766.1 793 49.7
AUR62022593 Chenopodium quinoa HOM05D004502 ORTHO05D005579 3.8e-218 762.3 667 57.3
HPP92_022633 Vanilla planifolia HOM05D004502 ORTHO05D005579 5.4e-217 758.4 822 48.1
MBI18_g32047_MAGBIO Magnolia biondii HOM05D004502 ORTHO05D005579 1.5e-214 750.4 895 46.5
EL10Ac1g00390 Beta vulgaris HOM05D004502 ORTHO05D005579 4.0e-212 742.3 848 47.8
MELO3C021198.2 Cucumis melo HOM05D004502 ORTHO05D005579 5.2e-212 741.9 509 69.0
QL12p032431 Quercus lobata HOM05D004502 ORTHO05D005579 3.8e-210 735.7 774 49.9
Nitab4.5_0000583g0350 Nicotiana tabacum HOM05D004502 ORTHO05D005579 4.3e-206 722.2 805 48.9
SHI13432 Sapria himalayana HOM05D004502 ORTHO05D005579 4.8e-197 692.2 692 51.9
TWI60G0172 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 1.1e-196 691.0 783 47.1
Aqoxy7G00261 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 4.6e-184 649.0 715 49.5
COL.COLO4_34496 Corchorus olitorius HOM05D004502 ORTHO05D005579 5.7e-182 642.1 794 43.3
Zm00001eb222430 Zea mays HOM05D004502 ORTHO05D005579 1.2e-179 634.4 650 50.2
FAN03G0719 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.0e-178 631.3 710 48.0
TAR375G0606 Trochodendron aralioides HOM05D004502 ORTHO05D005579 4.2e-169 599.4 448 66.5
Ah.05g180370 Amaranthus hybridus HOM05D004502 ORTHO05D005579 1.7e-149 534.3 525 51.4
DCAR_008618 Daucus carota HOM05D004502 ORTHO05D005579 7.0e-148 528.9 371 68.7
Gohir.A08G131900 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.2e-147 528.1 435 61.1
Gohir.A08G131800 Gossypium hirsutum HOM05D004502 ORTHO05D005579 4.7e-136 489.6 333 72.4
Glyma.16G034551 Glycine max HOM05D004502 ORTHO05D005579 1.8e-135 487.6 327 71.9
AUR62010714 Chenopodium quinoa HOM05D004502 ORTHO05D005579 5.9e-131 472.6 726 38.2
Glyma.16G034476 Glycine max HOM05D004502 ORTHO05D005579 2.9e-109 400.6 368 55.2
Haze_08811 Corylus avellana HOM05D004502 ORTHO05D005579 4.1e-108 396.7 492 44.5
Mapoly0035s0107 Marchantia polymorpha HOM05D004502 ORTHO05D005579 7.3e-97 359.4 768 31.2
unitig_26.g9298 Utricularia gibba HOM05D004502 ORTHO05D005579 1.1e-95 355.5 294 57.8
Pp3c10_11170 Physcomitrium patens HOM05D004502 ORTHO05D005579 3.1e-95 354.0 877 27.9
CDE06G0820 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 6.4e-93 346.3 352 48.0
unitig_26.g9297 Utricularia gibba HOM05D004502 ORTHO05D005579 1.5e-89 335.1 406 44.6
MELO3C021197.2 Cucumis melo HOM05D004502 ORTHO05D005579 4.6e-83 313.5 284 57.4
Hund14837 Selenicereus undatus HOM05D004502 ORTHO05D005579 5.1e-82 310.1 467 38.8
Cc08_g14990 Coffea canephora HOM05D004502 ORTHO05D005579 6.0e-75 286.6 289 48.4
SEGI_07374 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 1.9e-65 255.0 392 34.7
COL.COLO4_28934 Corchorus olitorius HOM05D004502 ORTHO05D005579 4.8e-56 223.8 196 57.1
MD01G1067000 Malus domestica HOM05D004502 ORTHO05D005579 1.4e-52 212.2 167 64.7
vmacro20916 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 2.4e-47 194.9 167 63.5
MELO3C031211.2 Cucumis melo HOM05D004502 ORTHO05D005579 8.8e-34 149.8 134 56.0
CBR_g17145 Chara braunii HOM05D004502 ORTHO05D005579 1.4e-26 125.9 113 46.9
TPR.G24958 Trifolium pratense HOM05D004502 ORTHO05D005579 6.3e-24 117.1 113 51.3
Hund14845 Selenicereus undatus HOM05D004502 ORTHO05D005579 4.5e-22 110.9 109 52.3
CDE06G0272 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 8.0e-19 100.1 87 64.4
Hund14838 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.4e-18 99.4 115 43.5
MELO3C034807.2 Cucumis melo HOM05D004502 ORTHO05D011879 7.8e-14 83.6 88 50.0
arahy.Tifrunner.gnm1.ann1.I8C0YZ Arachis hypogaea HOM05D000064 ORTHO05D001480 2.8e-11 75.1 66 57.6
SEGI_31877 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 3.6e-11 74.7 66 47.0
arahy.Tifrunner.gnm1.ann1.YV6W0W Arachis hypogaea HOM05D000064 ORTHO05D001480 1.8e-10 72.4 52 63.5
arahy.Tifrunner.gnm1.ann1.R57FTB Arachis hypogaea HOM05D004502 ORTHO05D002623 3.1e-10 71.6 36 83.3
Thecc.03G282200 Theobroma cacao HOM05D004502 ORTHO05D005579 1.4e-07 62.8 57 50.9
Hund14846 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.9e-07 62.4 39 61.5


User provided reference genes

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