Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003895 Carpinus fangiana HOM05D006343 ORTHO05D005694 7.1e-102 374.4 262 100.0
Haze_15537 Corylus avellana HOM05D006343 ORTHO05D005694 7.0e-81 304.7 265 89.8
CiPaw.01G064000 Carya illinoinensis HOM05D006343 ORTHO05D005694 2.0e-51 206.8 315 59.7
CiPaw.02G033200 Carya illinoinensis HOM05D006343 ORTHO05D005694 4.7e-45 185.7 304 48.7
Ciclev10021525m.g Citrus clementina HOM05D006343 ORTHO05D005694 2.6e-35 153.3 310 40.3
QL04p054168 Quercus lobata HOM05D006343 ORTHO05D005694 5.8e-35 152.1 327 56.9
Manes.05G031900 Manihot esculenta HOM05D006343 ORTHO05D005694 1.3e-34 151.0 306 40.8
Manes.01G254700 Manihot esculenta HOM05D006343 ORTHO05D005694 3.0e-31 139.8 319 38.6
Atru.chr5.528 Acer truncatum HOM05D006343 ORTHO05D005694 4.3e-30 136.0 302 40.7
CsaV3_6G000720 Cucumis sativus L. HOM05D006343 ORTHO05D005694 2.8e-29 133.3 299 40.8
Sabra14G0063500 Salix brachista HOM05D006343 ORTHO05D005694 3.6e-29 132.9 322 38.5
Potri.002G161700 Populus trichocarpa HOM05D006343 ORTHO05D005694 4.7e-29 132.5 313 39.3
Potri.014G087500 Populus trichocarpa HOM05D006343 ORTHO05D005694 4.0e-28 129.4 312 39.1
CANSAT56G2487 Cannabis sativa HOM05D006343 ORTHO05D005694 6.8e-28 128.6 320 42.8
COL.COLO4_12739 Corchorus olitorius HOM05D006343 ORTHO05D005694 4.4e-27 125.9 283 49.5
Duzib138G0695 Durio zibethinus HOM05D006343 ORTHO05D005694 2.2e-26 123.6 284 46.8
Sabra02G0128600 Salix brachista HOM05D006343 ORTHO05D005694 6.4e-26 122.1 318 35.5
Gorai.007G101600 Gossypium raimondii HOM05D006343 ORTHO05D005694 7.1e-25 118.6 271 46.1
Glyma.07G068200 Glycine max HOM05D006343 ORTHO05D005694 3.5e-24 116.3 295 38.3
Prupe.2G173800 Prunus persica HOM05D006343 ORTHO05D005694 3.9e-23 112.8 301 39.2
FAN10G3829 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.5e-22 110.9 288 35.4
FAN01G0301 Fragaria x ananassa HOM05D006343 ORTHO05D005694 3.3e-22 109.8 291 35.4
FAN10G0914 Fragaria x ananassa HOM05D006343 ORTHO05D005694 4.3e-22 109.4 288 35.4
Lalb_Chr17g0339411 Lupinus albus HOM05D006343 ORTHO05D005694 9.6e-22 108.2 295 50.8
CSS0004449 Camellia sinensis var. sinensis HOM05D006343 ORTHO05D005694 1.2e-21 107.8 275 40.7
Gohir.D11G095300 Gossypium hirsutum HOM05D006343 ORTHO05D005694 1.2e-21 107.8 289 45.3
MELO3C021196.2 Cucumis melo HOM05D006343 ORTHO05D005694 3.6e-21 106.3 307 41.4
VMungo0331G0061 Vigna mungo HOM05D006343 ORTHO05D005694 4.7e-21 105.9 276 38.8
RcHm_v2.0_Chr1g0357021 Rosa chinensis HOM05D006343 ORTHO05D005694 6.2e-21 105.5 285 33.7
Thecc.01G356100 Theobroma cacao HOM05D006343 ORTHO05D005694 8.1e-21 105.1 294 52.4
FAN03G1905 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.1e-20 104.8 278 34.5
Glyma.16G034200 Glycine max HOM05D006343 ORTHO05D005694 4.0e-20 102.8 311 40.5
Sed0018743 Sechium edule HOM05D006343 ORTHO05D005694 4.0e-20 102.8 289 40.5
TWI23G0998 Tripterygium wilfordii HOM05D006343 ORTHO05D005694 6.8e-20 102.1 272 39.3
Dinv43841 Davidia involucrata HOM05D006343 ORTHO05D005694 2.0e-19 100.5 281 36.3
FAN06G0921 Fragaria x ananassa HOM05D006343 ORTHO05D005694 2.6e-19 100.1 207 41.1
ClCG06G003540 Citrullus lanatus HOM05D006343 ORTHO05D005694 7.6e-19 98.6 130 51.5
FvH4_7g14980 Fragaria vesca HOM05D006343 ORTHO05D005694 7.6e-19 98.6 207 40.6
TWI14G1134 Tripterygium wilfordii HOM05D006343 ORTHO05D005694 6.4e-18 95.5 270 38.5
Duzib133G0920 Durio zibethinus HOM05D006343 ORTHO05D005694 8.4e-18 95.1 287 50.5
MD01G1067400 Malus domestica HOM05D006343 ORTHO05D005694 8.4e-18 95.1 317 36.6
Phvul.010G101000 Phaseolus vulgaris HOM05D006343 ORTHO05D005694 1.6e-16 90.9 284 35.6
Cpa.g.sc11.35 Carica papaya HOM05D006343 ORTHO05D005694 2.7e-16 90.1 294 35.4
MD07G1133500 Malus domestica HOM05D006343 ORTHO05D005694 2.7e-16 90.1 299 41.8
FvH4_7g14870 Fragaria vesca HOM05D006343 ORTHO05D005694 6.0e-16 89.0 294 33.3
FAN03G1311 Fragaria x ananassa HOM05D006343 ORTHO05D005694 6.0e-16 89.0 296 33.4
FAN10G3557 Fragaria x ananassa HOM05D006343 ORTHO05D005694 6.0e-16 89.0 298 33.2
GSVIVG01026998001 Vitis vinifera HOM05D006343 ORTHO05D005694 3.0e-15 86.7 308 36.4
Actinidia20887 Actinidia chinensis HOM05D006343 ORTHO05D005694 8.7e-15 85.1 285 30.5
THA.LOC104825850 Tarenaya hassleriana HOM05D012121 ORTHO05D005694 8.7e-15 85.1 316 37.3
Gohir.A11G090700 Gossypium hirsutum HOM05D006343 ORTHO05D005694 1.1e-14 84.7 289 48.1
FAN06G0140 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.9e-14 84.0 291 32.6
TAR629G3314 Trochodendron aralioides HOM05D006343 ORTHO05D005694 2.5e-14 83.6 299 33.1
FAN06G4353 Fragaria x ananassa HOM05D006343 ORTHO05D005694 3.3e-14 83.2 295 31.5
Medtr3g015950 Medicago truncatula HOM05D006343 ORTHO05D005694 9.6e-14 81.6 271 35.8
Hma1.2p1_0702F.1_g206150 Hydrangea macrophylla HOM05D006343 ORTHO05D005694 8.1e-13 78.6 297 35.0
Medtr8g028845 Medicago truncatula HOM05D006343 ORTHO05D005694 8.1e-13 78.6 227 33.9
Lj3g0021957 Lotus japonicus HOM05D006343 ORTHO05D005694 1.1e-12 78.2 219 32.0
MSTRG.18339 Avicennia marina HOM05D006343 ORTHO05D005694 4.0e-12 76.3 287 30.0
BcaB01g02239 Brassica carinata HOM05D012121 ORTHO05D005694 4.0e-12 76.3 305 30.2
Gohir.D08G153300 Gossypium hirsutum HOM05D006343 ORTHO05D005694 4.0e-12 76.3 276 43.8
Lsat_1_v5_gn_7_4060 Lactuca sativa HOM05D006343 ORTHO05D005694 4.0e-12 76.3 298 30.5
Oeu055797.1 Olea europaea HOM05D006343 ORTHO05D005694 4.0e-12 76.3 290 32.8
Thhalv10028840m.g Eutrema salsugineum HOM05D012121 ORTHO05D005694 6.9e-12 75.5 315 29.2
Rhsim01G0164000 Rhododendron simsii HOM05D006343 ORTHO05D005694 6.9e-12 75.5 299 33.4
FAN10G3545 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.2e-11 74.7 336 30.1
Rhsim01G0164400 Rhododendron simsii HOM05D006343 ORTHO05D005694 1.2e-11 74.7 298 27.9
SalBow6G3791 Salvia bowleyana HOM05D006343 ORTHO05D005694 2.6e-11 73.6 281 32.4
vmacro20913 Vaccinium macrocarpon HOM05D006343 ORTHO05D005694 1.7e-10 70.9 303 28.1
Eucgr.I00992 Eucalyptus grandis HOM05D006343 ORTHO05D005694 3.8e-10 69.7 320 29.7
FAN03G2349 Fragaria x ananassa HOM05D006343 ORTHO05D005694 4.9e-10 69.3 74 56.8
Lsat_1_v5_gn_7_4100 Lactuca sativa HOM05D006343 ORTHO05D005694 8.4e-10 68.6 299 30.1
Nitab4.5_0003369g0030 Nicotiana tabacum HOM05D006343 ORTHO05D005694 1.1e-09 68.2 310 26.5
CARHR248400 Cardamine hirsuta HOM05D012121 ORTHO05D005694 1.9e-09 67.4 312 28.2
MSTRG.12522 Avicennia marina HOM05D006343 ORTHO05D005694 2.4e-09 67.0 285 30.9
Rhsim06G0236200 Rhododendron simsii HOM05D006343 ORTHO05D005694 2.4e-09 67.0 102 42.2
AT4G00310 Arabidopsis thaliana HOM05D012121 ORTHO05D005694 3.2e-09 66.6 212 32.1
Gorai.004G159200 Gossypium raimondii HOM05D006343 ORTHO05D005694 3.2e-09 66.6 98 44.9
Nn1g01591 Nelumbo nucifera HOM05D006343 ORTHO05D005694 3.2e-09 66.6 316 35.4
Dinv32502 Davidia involucrata HOM05D006343 ORTHO05D005694 4.2e-09 66.2 234 30.3
vmacro20912 Vaccinium macrocarpon HOM05D006343 ORTHO05D005694 7.1e-09 65.5 232 32.8
AL6G53170 Arabidopsis lyrata HOM05D012121 ORTHO05D005694 9.3e-09 65.1 207 30.9
arahy.Tifrunner.gnm1.ann1.C4511I Arachis hypogaea HOM05D051984 ORTHO05D005694 1.2e-08 64.7 111 41.4
PGR042G0313 Punica granatum HOM05D006343 ORTHO05D005694 2.1e-08 63.9 104 43.3
arahy.Tifrunner.gnm1.ann1.ZG4E8S Arachis hypogaea HOM05D051984 ORTHO05D005694 3.5e-08 63.2 113 40.7
Oeu035725.1 Olea europaea HOM05D003054 ORTHO05D003376 4.6e-08 62.8 224 29.0
THA.LOC104801575 Tarenaya hassleriana HOM05D012121 ORTHO05D005694 4.6e-08 62.8 109 41.3
Medtr8g028835 Medicago truncatula HOM05D006343 ORTHO05D005694 1.0e-07 61.6 78 52.6
Nitab4.5_0002749g0010 Nicotiana tabacum HOM05D006343 ORTHO05D005694 1.7e-07 60.8 304 25.3
DCAR_015701 Daucus carota HOM05D006343 ORTHO05D005694 2.3e-07 60.5 272 28.3
Oeu035719.1 Olea europaea HOM05D003054 ORTHO05D003376 2.3e-07 60.5 230 28.3
Cc02_g38320 Coffea canephora HOM05D006343 ORTHO05D005694 5.1e-07 59.3 287 26.5
Sp6g00380 Schrenkiella parvula HOM05D012121 ORTHO05D005694 5.1e-07 59.3 309 27.8
unitig_22.g5289 Utricularia gibba HOM05D006343 ORTHO05D005694 2.5e-06 57.0 267 28.1
unitig_8.g3737 Utricularia gibba HOM05D006343 ORTHO05D005694 3.3e-06 56.6 48 58.3
DCAR_015699 Daucus carota HOM05D006343 ORTHO05D005694 4.3e-06 56.2 276 29.7
FAN06G3406 Fragaria x ananassa HOM05D006343 ORTHO05D005694 5.6e-06 55.8 99 40.4
Aqoxy7G00256 Aquilegia oxysepala HOM05D006343 ORTHO05D005694 7.3e-06 55.5 324 37.7


User provided reference genes

Program Settings