Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 0.0e+00 2240.3 1123 100.0
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 0.0e+00 2023.4 1132 89.6
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 2006.9 1125 89.2
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 0.0e+00 1992.2 1124 90.8
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 0.0e+00 1959.9 1123 86.0
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 0.0e+00 1950.3 1125 86.2
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 0.0e+00 1945.2 1125 85.8
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1939.9 1126 86.1
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 0.0e+00 1932.9 1122 84.8
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1929.1 1128 85.1
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 0.0e+00 1926.8 1125 85.4
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 0.0e+00 1922.1 1124 84.4
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1914.8 1125 84.3
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 0.0e+00 1914.0 1123 84.7
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1910.2 1126 85.0
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1906.0 1124 83.7
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1903.6 1125 84.1
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1902.9 1126 83.9
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 0.0e+00 1900.6 1129 84.1
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 0.0e+00 1897.1 1125 84.4
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1892.1 1140 83.3
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 0.0e+00 1891.7 1124 84.7
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1882.8 1124 83.1
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 0.0e+00 1882.8 1124 83.0
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1879.4 1124 83.0
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 0.0e+00 1878.6 1096 85.2
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 0.0e+00 1877.1 1124 82.3
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1875.1 1140 82.7
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 0.0e+00 1874.8 1125 82.1
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1874.4 1124 82.9
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 0.0e+00 1873.6 1129 81.9
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 0.0e+00 1872.4 1118 83.1
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1867.0 1186 79.5
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 0.0e+00 1866.7 1129 81.6
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 0.0e+00 1864.4 1126 82.2
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1864.0 1125 82.7
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1863.2 1123 82.7
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1861.3 1128 82.4
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 0.0e+00 1859.0 1127 82.5
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 0.0e+00 1857.0 1126 82.1
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 0.0e+00 1855.5 1127 81.7
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1854.7 1126 82.4
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 0.0e+00 1852.8 1127 81.5
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 0.0e+00 1848.2 1126 82.3
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 0.0e+00 1845.5 1124 82.6
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 0.0e+00 1845.5 1151 79.9
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 0.0e+00 1844.7 1123 81.1
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 0.0e+00 1839.3 1124 80.7
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1835.1 1077 84.5
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 0.0e+00 1832.8 1124 81.0
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 0.0e+00 1828.1 1121 80.6
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 0.0e+00 1820.1 1123 80.1
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1819.7 1121 80.8
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 0.0e+00 1819.3 1131 80.0
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1818.1 1125 81.1
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1803.1 1162 78.1
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 0.0e+00 1801.2 1125 80.4
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1798.5 1196 76.3
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 0.0e+00 1791.9 1189 76.3
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 0.0e+00 1791.5 1127 78.8
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 0.0e+00 1790.0 1123 79.3
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 0.0e+00 1788.9 1126 78.2
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1780.4 1074 82.2
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 0.0e+00 1779.2 1036 85.5
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 0.0e+00 1778.1 1128 78.0
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 0.0e+00 1766.9 1123 78.5
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 0.0e+00 1763.4 1079 80.9
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1761.1 1255 73.4
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 0.0e+00 1746.9 1123 77.5
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 0.0e+00 1746.9 1119 78.0
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1733.4 1155 77.7
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 0.0e+00 1733.4 1124 77.5
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 0.0e+00 1728.0 1123 76.8
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1724.5 1122 76.6
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1723.8 1123 76.8
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 0.0e+00 1723.0 1316 69.5
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1703.7 1122 75.9
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1697.9 1122 75.7
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 0.0e+00 1692.6 1122 75.7
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1691.8 1122 75.6
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 0.0e+00 1689.9 1123 75.6
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1676.8 1123 75.2
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 0.0e+00 1675.6 1123 75.2
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 0.0e+00 1656.3 1124 74.5
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 0.0e+00 1649.0 1161 73.4
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 0.0e+00 1615.5 1145 71.0
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 0.0e+00 1608.6 1155 71.4
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 0.0e+00 1598.2 952 83.6
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 0.0e+00 1580.5 1119 72.0
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 0.0e+00 1570.8 1126 70.8
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 0.0e+00 1565.8 1160 70.1
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1557.0 1129 69.2
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1545.4 1129 68.8
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1508.4 1110 70.5
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1464.1 838 86.5
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1461.0 833 86.6
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1453.0 870 82.3
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 0.0e+00 1439.5 980 75.4
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 0.0e+00 1381.3 861 78.6
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1316.6 1128 62.1
CiPaw.01G064500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1269.2 687 90.7
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1268.1 783 81.1
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 0.0e+00 1243.8 815 75.3
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 0.0e+00 1122.1 1151 51.5
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 0.0e+00 1118.6 1526 45.0
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 4.3e-305 1051.6 1122 50.2
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 7.6e-294 1014.2 1151 47.7
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 5.1e-282 974.9 1146 46.1
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 1.7e-277 959.9 668 71.0
COL.COLO4_12744 Corchorus olitorius HOM05D004297 ORTHO05D005213 5.9e-270 934.9 530 88.3
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 1.1e-265 920.6 675 71.1
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 2.9e-261 906.0 1392 37.9
CSS0030491 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 2.3e-258 896.3 584 78.6
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 9.7e-257 891.0 737 62.8
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 1.2e-203 714.5 451 77.8
Psat0ss4650g0200 Pisum sativum HOM05D004297 ORTHO05D005213 7.6e-201 705.3 617 61.6
CDE04G3641 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 3.2e-199 699.9 435 80.9
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 3.3e-188 663.3 592 56.8
SEGI_29424 Sequoiadendron giganteum HOM05D004297 ORTHO05D000001 3.0e-181 640.2 420 71.2
COL.COLO4_12743 Corchorus olitorius HOM05D004297 ORTHO05D005213 6.1e-158 562.8 451 65.0
Psat7g148560 Pisum sativum HOM05D004297 ORTHO05D005213 1.8e-138 498.0 312 79.2
AUR62004391 Chenopodium quinoa HOM05D004297 ORTHO05D005213 1.5e-135 488.4 376 71.3
Peaxi162Scf41243g00005 Petunia axillaris HOM05D004297 ORTHO05D005213 1.7e-123 448.4 331 72.8
MCO14G315 Micromonas commoda HOM05D004297 ORTHO05D005213 3.7e-107 394.0 1095 29.9
PRCOL_00000293 Prasinoderma coloniale HOM05D004297 ORTHO05D005213 1.1e-87 329.3 770 31.2
HPP92_012695 Vanilla planifolia HOM05D004297 ORTHO05D005213 1.5e-79 302.4 189 76.2
Cre12.g506650 Chlamydomonas reinhardtii HOM05D004297 ORTHO05D005213 7.3e-79 300.1 1455 22.8
HPP92_012670 Vanilla planifolia HOM05D004297 ORTHO05D005213 1.6e-78 298.9 232 69.8
AagrBONN_evm.TU.Sc2ySwM_344.3195 Anthoceros agrestis HOM05D004297 ORTHO05D005213 2.1e-78 298.5 294 55.4
Sc23g0002730 Simmondsia chinensis HOM05D004297 ORTHO05D005213 1.9e-74 285.4 191 70.2
MD01G1068000 Malus domestica HOM05D004297 ORTHO05D005213 1.9e-71 275.4 198 76.8
vmacro23481 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 6.2e-70 270.4 294 54.1
BcaC07g42689 Brassica carinata HOM05D004297 ORTHO05D005213 2.9e-67 261.5 186 69.4
Ah.05g180350 Amaranthus hybridus HOM05D004297 ORTHO05D005213 1.0e-64 253.1 206 61.2
AagrBONN_evm.TU.Sc2ySwM_344.3204 Anthoceros agrestis HOM05D004297 ORTHO05D005213 1.4e-58 232.6 319 38.9
TAR629G3312 Trochodendron aralioides HOM05D004297 ORTHO05D005213 1.4e-58 232.6 212 59.0
BolC6t37919H Brassica oleracea HOM05D004297 ORTHO05D005213 2.2e-51 208.8 212 59.4
CSS0029755 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 8.5e-51 206.8 593 31.7
C06p27520 Brassica napus HOM05D004297 ORTHO05D005213 4.6e-49 201.1 212 56.6
SEGI_39496 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 2.5e-47 195.3 248 44.8
Cc02_g24300 Coffea canephora HOM05D004297 ORTHO05D005213 2.4e-45 188.7 169 59.8
Lsat_1_v5_gn_9_9281 Lactuca sativa HOM05D004297 ORTHO05D005213 1.5e-44 186.0 331 41.7
Rhsim06G0128600 Rhododendron simsii HOM05D000263 ORTHO05D000213 8.2e-38 163.7 185 52.4
Cfa026409 Carpinus fangiana HOM05D004297 ORTHO05D005213 3.2e-34 151.8 720 23.5
MD11G1239400 Malus domestica HOM05D004297 ORTHO05D005213 9.4e-34 150.2 87 85.1
arahy.Tifrunner.gnm1.ann1.K3XHZI Arachis hypogaea HOM05D004297 ORTHO05D005213 1.1e-31 143.3 87 81.6
SEGI_34049 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 2.0e-28 132.5 85 80.0
CSS0014634 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 2.2e-27 129.0 164 50.0
SEGI_01640 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 3.8e-27 128.3 85 67.1
Rhsim06G0126700 Rhododendron simsii HOM05D000263 ORTHO05D000213 6.1e-25 120.9 164 44.5
Cpa.g.sc11.39 Carica papaya HOM05D004297 ORTHO05D005213 4.4e-23 114.8 65 81.5
AT5G28442 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 1.3e-22 113.2 74 74.3
Rhsim12G0103300 Rhododendron simsii HOM05D004297 ORTHO05D339569 3.8e-19 101.7 161 39.8
Hma1.2p1_0733F.1_g210090 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 1.1e-18 100.1 60 81.7
CARHR057240 Cardamine hirsuta HOM05D004297 ORTHO05D005213 1.9e-18 99.4 67 68.7
RcHm_v2.0_Chr1g0356921 Rosa chinensis HOM05D004297 ORTHO05D005213 1.6e-17 96.3 64 73.4
CSS0021987 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.4e-16 93.2 80 63.8
VMungo0464G0057 Vigna mungo HOM05D004297 ORTHO05D005213 1.4e-16 93.2 69 66.7
RcHm_v2.0_Chr1g0356901 Rosa chinensis HOM05D004297 ORTHO05D005213 3.7e-14 85.1 95 51.6
RcHm_v2.0_Chr1g0356891 Rosa chinensis HOM05D004297 ORTHO05D005213 4.8e-14 84.7 45 82.2
Rhsim06G0128400 Rhododendron simsii HOM05D000263 ORTHO05D000213 3.1e-13 82.0 56 69.6
arahy.Tifrunner.gnm1.ann1.ABA0S6 Arachis hypogaea HOM05D004297 ORTHO05D005213 1.7e-11 76.3 48 75.0
Lsat_1_v5_gn_4_49241 Lactuca sativa HOM05D004297 ORTHO05D005213 1.7e-11 76.3 55 63.6
arahy.Tifrunner.gnm1.ann1.WWIQ7K Arachis hypogaea HOM05D004297 ORTHO05D005213 2.3e-11 75.9 54 72.2
Ah.05g180910 Amaranthus hybridus HOM05D000862 ORTHO05D000943 1.5e-10 73.2 49 69.4
CSS0028965 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 2.5e-10 72.4 43 76.7
arahy.Tifrunner.gnm1.ann1.19V8U8 Arachis hypogaea HOM05D000005 ORTHO05D000012 1.0e-08 67.0 71 52.1
RcHm_v2.0_Chr1g0356911 Rosa chinensis HOM05D004297 ORTHO05D005213 8.9e-08 63.9 34 73.5
Nn1g01614 Nelumbo nucifera HOM05D004297 ORTHO05D005213 1.2e-07 63.5 41 68.3


User provided reference genes

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