Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003885 Carpinus fangiana HOM05D003847 ORTHO05D004976 8.3e-213 743.4 373 100.0
Haze_15549 Corylus avellana HOM05D003847 ORTHO05D004976 1.3e-202 709.5 373 96.2
Thecc.01G354200 Theobroma cacao HOM05D003847 ORTHO05D004976 2.0e-190 669.1 401 83.8
ClCG05G001330 Citrullus lanatus HOM05D003847 ORTHO05D004976 4.5e-190 667.9 373 89.8
CsaV3_3G008710 Cucumis sativus L. HOM05D003847 ORTHO05D004976 1.3e-189 666.4 402 84.6
COL.COLO4_12761 Corchorus olitorius HOM05D003847 ORTHO05D004976 1.7e-189 666.0 401 83.3
Duzib133G1387 Durio zibethinus HOM05D003847 ORTHO05D004976 3.8e-189 664.8 401 83.0
GSVIVG01026981001 Vitis vinifera HOM05D003847 ORTHO05D004976 3.8e-189 664.8 401 83.8
MELO3C006089.2 Cucumis melo HOM05D003847 ORTHO05D004976 6.4e-189 664.1 402 84.6
QL04p055042 Quercus lobata HOM05D003847 ORTHO05D004976 8.4e-189 663.7 399 84.2
Dinv43851 Davidia involucrata HOM05D003847 ORTHO05D004976 1.2e-187 659.8 373 88.2
CSS0029735 Camellia sinensis var. sinensis HOM05D003847 ORTHO05D004976 3.5e-187 658.3 401 82.5
Gorai.007G102500 Gossypium raimondii HOM05D003847 ORTHO05D004976 2.3e-186 655.6 401 82.3
Gohir.A11G091500 Gossypium hirsutum HOM05D003847 ORTHO05D004976 3.0e-186 655.2 401 82.3
Manes.05G031000 Manihot esculenta HOM05D003847 ORTHO05D004976 3.9e-186 654.8 401 82.3
CANSAT56G2934 Cannabis sativa HOM05D003847 ORTHO05D004976 8.7e-186 653.7 402 83.6
Cc02_g38410 Coffea canephora HOM05D003847 ORTHO05D004976 8.7e-186 653.7 401 82.8
CiPaw.01G065300 Carya illinoinensis HOM05D003847 ORTHO05D004976 1.5e-185 652.9 402 83.3
FAN10G1372 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.5e-185 652.9 401 82.5
Prupe.2G175500 Prunus persica HOM05D003847 ORTHO05D004976 1.5e-185 652.9 401 81.8
Hma1.2p1_0627F.1_g191710 Hydrangea macrophylla HOM05D003847 ORTHO05D004976 1.9e-185 652.5 401 82.0
Ciclev10020054m.g Citrus clementina HOM05D003847 ORTHO05D004976 5.6e-185 651.0 400 82.2
FAN01G0997 Fragaria x ananassa HOM05D003847 ORTHO05D004976 5.6e-185 651.0 401 82.5
FAN06G3510 Fragaria x ananassa HOM05D003847 ORTHO05D004976 5.6e-185 651.0 401 82.5
Gohir.D11G096200 Gossypium hirsutum HOM05D003847 ORTHO05D004976 7.4e-185 650.6 401 81.8
Sed0007018 Sechium edule HOM05D003847 ORTHO05D004976 1.3e-184 649.8 402 82.6
MBI04_g26959_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D004976 2.1e-184 649.0 375 85.1
Potri.014G088900 Populus trichocarpa HOM05D003847 ORTHO05D004976 2.1e-184 649.0 401 81.8
FAN10G2219 Fragaria x ananassa HOM05D003847 ORTHO05D004976 6.2e-184 647.5 401 82.0
MD01G1069400 Malus domestica HOM05D003847 ORTHO05D004976 8.1e-184 647.1 401 81.3
Sabra14G0064600 Salix brachista HOM05D003847 ORTHO05D004976 1.8e-183 646.0 401 81.3
RcHm_v2.0_Chr1g0357201 Rosa chinensis HOM05D003847 ORTHO05D004976 5.3e-183 644.4 401 82.0
VMungo1383G0817 Vigna mungo HOM05D003847 ORTHO05D004976 1.2e-182 643.3 402 80.1
Potri.002G162700 Populus trichocarpa HOM05D003847 ORTHO05D004976 1.5e-182 642.9 401 81.0
PGR042G1058 Punica granatum HOM05D003847 ORTHO05D004976 1.5e-182 642.9 401 81.0
Nitab4.5_0003779g0180 Nicotiana tabacum HOM05D003847 ORTHO05D004976 4.5e-182 641.3 373 85.5
Glyma.18G237300 Glycine max HOM05D003847 ORTHO05D004976 1.3e-181 639.8 402 80.3
Phvul.008G059300 Phaseolus vulgaris HOM05D003847 ORTHO05D004976 1.3e-181 639.8 402 80.3
Actinidia02826 Actinidia chinensis HOM05D003847 ORTHO05D004976 2.2e-181 639.0 400 80.2
FAN03G1748 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.2e-181 639.0 415 79.5
Migut.N01455 Erythranthe guttata HOM05D003847 ORTHO05D004976 3.8e-181 638.3 401 79.8
Glyma.09G255600 Glycine max HOM05D003847 ORTHO05D004976 3.8e-181 638.3 402 80.1
Nn1g01640 Nelumbo nucifera HOM05D003847 ORTHO05D004976 3.8e-181 638.3 401 79.3
Solyc01g094930.3 Solanum lycopersicum HOM05D003847 ORTHO05D004976 4.9e-181 637.9 401 79.8
TWI59G0695 Tripterygium wilfordii HOM05D003847 ORTHO05D004976 4.9e-181 637.9 402 80.3
Sopen01g038710 Solanum pennellii HOM05D003847 ORTHO05D004976 8.4e-181 637.1 401 79.8
Nitab4.5_0001702g0130 Nicotiana tabacum HOM05D003847 ORTHO05D004976 1.1e-180 636.7 381 84.3
vmacro20904 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 1.1e-180 636.7 375 83.7
Nitab4.5_0001269g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 2.4e-180 635.6 373 84.5
Eucgr.D02317 Eucalyptus grandis HOM05D003847 ORTHO05D004976 4.2e-180 634.8 401 80.5
Medtr7g078760 Medicago truncatula HOM05D003847 ORTHO05D004976 1.2e-179 633.3 400 80.0
AUR62022605 Chenopodium quinoa HOM05D003847 ORTHO05D004976 2.1e-179 632.5 403 79.4
Lalb_Chr04g0259201 Lupinus albus HOM05D003847 ORTHO05D004976 4.6e-179 631.3 402 78.1
AUR62004399 Chenopodium quinoa HOM05D003847 ORTHO05D004976 1.0e-178 630.2 402 78.6
DCAR_025211 Daucus carota HOM05D003847 ORTHO05D004976 1.0e-178 630.2 401 78.1
CAN.G78.110 Capsicum annuum HOM05D003847 ORTHO05D004976 1.3e-178 629.8 401 79.3
Ca_00820_v3 Cicer arietinum L. HOM05D003847 ORTHO05D004976 2.3e-178 629.0 398 79.4
arahy.Tifrunner.gnm1.ann1.9YV9D4 Arachis hypogaea HOM05D003847 ORTHO05D004976 3.0e-178 628.6 400 78.8
Sabra02G0147800 Salix brachista HOM05D003847 ORTHO05D004976 3.0e-178 628.6 425 76.5
DCAR_008629 Daucus carota HOM05D003847 ORTHO05D004976 5.1e-178 627.9 401 78.3
Lj1g0024026 Lotus japonicus HOM05D003847 ORTHO05D004976 1.1e-177 626.7 402 78.1
HanXRQChr17g0562361 Helianthus annuus HOM05D003847 ORTHO05D004976 1.5e-177 626.3 402 78.6
arahy.Tifrunner.gnm1.ann1.P1PLPP Arachis hypogaea HOM05D003847 ORTHO05D004976 1.9e-177 625.9 400 78.5
ECA234G3268 Erigeron canadensis HOM05D003847 ORTHO05D004976 5.6e-177 624.4 402 78.4
Hund16669 Selenicereus undatus HOM05D003847 ORTHO05D004976 9.6e-177 623.6 402 78.4
SalBow5G2471 Salvia bowleyana HOM05D003847 ORTHO05D004976 1.3e-176 623.2 390 79.5
SGA_v2.0_scaffold43G16402 Striga asiatica HOM05D003847 ORTHO05D004976 2.8e-176 622.1 402 78.1
BcaB01g02281 Brassica carinata HOM05D003847 ORTHO05D004976 5.3e-175 617.8 402 78.9
CDE11G0931 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 9.0e-175 617.1 401 77.3
Nitab4.5_0011900g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 1.2e-174 616.7 423 76.1
A09p00040 Brassica napus HOM05D003847 ORTHO05D004976 1.5e-174 616.3 402 78.6
BraA09t35735Z Brassica rapa HOM05D003847 ORTHO05D004976 2.0e-174 615.9 402 78.4
Lsat_1_v5_gn_4_34641 Lactuca sativa HOM05D003847 ORTHO05D004976 2.0e-174 615.9 402 77.4
Lj9C587T13 Lonicera japonica HOM05D003847 ORTHO05D004976 3.4e-174 615.1 401 78.6
BcaC04g24142 Brassica carinata HOM05D003847 ORTHO05D004976 5.8e-174 614.4 402 78.4
C09p00660 Brassica napus HOM05D003847 ORTHO05D004976 5.8e-174 614.4 402 78.4
Sabra02G0148200 Salix brachista HOM05D003847 ORTHO05D004976 5.8e-174 614.4 447 72.7
TPR.G22298 Trifolium pratense HOM05D003847 ORTHO05D004976 7.6e-174 614.0 400 78.0
Aqoxy5G04080 Aquilegia oxysepala HOM05D003847 ORTHO05D004976 1.7e-173 612.8 402 76.9
BcaC01g06856 Brassica carinata HOM05D003847 ORTHO05D004976 2.9e-173 612.1 401 77.8
C03p39000 Brassica napus HOM05D003847 ORTHO05D004976 2.9e-173 612.1 401 77.8
BolC3t16172H Brassica oleracea HOM05D003847 ORTHO05D004976 2.9e-173 612.1 401 77.8
BcaB01g02153 Brassica carinata HOM05D003847 ORTHO05D004976 4.9e-173 611.3 401 77.3
BolC9t53000H Brassica oleracea HOM05D003847 ORTHO05D004976 4.9e-173 611.3 402 77.9
THA.LOC104825858 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 4.9e-173 611.3 401 77.6
EL10Ac1g00369 Beta vulgaris HOM05D003847 ORTHO05D004976 8.4e-173 610.5 414 75.4
Thhalv10028603m.g Eutrema salsugineum HOM05D003847 ORTHO05D004976 8.4e-173 610.5 401 77.8
BraA03t12370Z Brassica rapa HOM05D003847 ORTHO05D004976 1.1e-172 610.1 401 77.6
THA.LOC104817033 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 1.9e-172 609.4 398 77.4
ATR0661G289 Amborella trichopoda HOM05D003847 ORTHO05D004976 2.5e-172 609.0 401 75.6
A03p31980 Brassica napus HOM05D003847 ORTHO05D004976 3.2e-172 608.6 401 77.3
CDE09G0314 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 7.1e-172 607.4 401 76.6
Sp6g00820 Schrenkiella parvula HOM05D003847 ORTHO05D004976 1.6e-171 606.3 401 77.6
CARHR249000 Cardamine hirsuta HOM05D003847 ORTHO05D004976 3.5e-171 605.1 401 77.3
Sc26g0000820 Simmondsia chinensis HOM05D003847 ORTHO05D004976 4.6e-171 604.7 400 76.8
Os02g0680400 Oryza sativa ssp. japonica HOM05D003847 ORTHO05D004976 6.0e-171 604.4 400 75.0
AT4G01320 Arabidopsis thaliana HOM05D003847 ORTHO05D004976 1.0e-170 603.6 401 77.3
Atru.chr5.1381 Acer truncatum HOM05D003847 ORTHO05D004976 1.8e-170 602.8 406 74.6
AL6G52080 Arabidopsis lyrata HOM05D003847 ORTHO05D004976 1.8e-170 602.8 401 77.3
Carub.0006s3638 Capsella rubella HOM05D003847 ORTHO05D004976 3.9e-170 601.7 401 77.1
RcHm_v2.0_Chr1g0357211 Rosa chinensis HOM05D003847 ORTHO05D004976 5.1e-170 601.3 400 74.8
MSTRG.28227 Avicennia marina HOM05D003847 ORTHO05D004976 3.3e-169 598.6 402 75.4
Duzib138G0396 Durio zibethinus HOM05D003847 ORTHO05D004976 4.3e-169 598.2 377 80.1
Zm00001eb187240 Zea mays HOM05D003847 ORTHO05D004976 4.3e-169 598.2 402 75.1
FvH4_7g15083 Fragaria vesca HOM05D003847 ORTHO05D004976 1.1e-167 593.6 401 73.6
FAN10G0014 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.4e-167 593.2 401 73.3
PSO478G2530 Papaver somniferum HOM05D003847 ORTHO05D004976 6.5e-165 584.3 400 74.5
PSO782G0912 Papaver somniferum HOM05D003847 ORTHO05D004976 2.5e-164 582.4 400 74.2
FAN03G0710 Fragaria x ananassa HOM05D003847 ORTHO05D004976 7.2e-164 580.9 401 72.1
SEGI_36957 Sequoiadendron giganteum HOM05D003847 ORTHO05D004976 8.7e-162 573.9 400 72.0
Oeu015226.2 Olea europaea HOM05D003847 ORTHO05D004976 2.4e-159 565.8 400 73.8
vmacro04325 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 1.2e-158 563.5 379 73.9
Oeu036597.2 Olea europaea HOM05D003847 ORTHO05D004976 5.9e-158 561.2 600 53.5
Peaxi162Scf00020g01122 Petunia axillaris HOM05D003847 ORTHO05D004976 3.8e-157 558.5 373 76.4
TAR629G0433 Trochodendron aralioides HOM05D003847 ORTHO05D004976 1.9e-156 556.2 401 72.8
FAN06G0785 Fragaria x ananassa HOM05D003847 ORTHO05D004976 9.4e-156 553.9 399 70.7
Pp3c4_3300 Physcomitrium patens HOM05D003847 ORTHO05D004976 2.1e-155 552.7 402 69.4
FAN06G4494 Fragaria x ananassa HOM05D003847 ORTHO05D004976 6.1e-155 551.2 392 71.2
FvH4_7g15084 Fragaria vesca HOM05D003847 ORTHO05D004976 1.0e-154 550.4 399 69.9
TAR375G0471 Trochodendron aralioides HOM05D003847 ORTHO05D004976 1.4e-154 550.1 353 77.1
AagrBONN_evm.TU.Sc2ySwM_344.5530 Anthoceros agrestis HOM05D003847 ORTHO05D004976 3.3e-153 545.4 399 67.9
Mapoly0151s0045 Marchantia polymorpha HOM05D003847 ORTHO05D004976 4.4e-153 545.0 402 69.2
RcHm_v2.0_Chr1g0357271 Rosa chinensis HOM05D003847 ORTHO05D004976 1.3e-152 543.5 399 69.9
Pp3c12_25070 Physcomitrium patens HOM05D003847 ORTHO05D004976 2.2e-152 542.7 402 67.2
SMO364G0773 Selaginella moellendorffii HOM05D003847 ORTHO05D004976 2.5e-148 529.3 401 64.8
FAN10G3576 Fragaria x ananassa HOM05D003847 ORTHO05D004976 9.4e-148 527.3 392 67.9
FAN06G4922 Fragaria x ananassa HOM05D003847 ORTHO05D004976 6.7e-146 521.2 403 66.7
HanXRQChr16g0521851 Helianthus annuus HOM05D003847 ORTHO05D004976 1.1e-145 520.4 402 66.7
HanXRQChr16g0521861 Helianthus annuus HOM05D003847 ORTHO05D004976 2.0e-145 519.6 421 64.6
arahy.Tifrunner.gnm1.ann1.W45FS6 Arachis hypogaea HOM05D003847 ORTHO05D004976 4.4e-145 518.5 400 68.0
FvH4_7g15081 Fragaria vesca HOM05D003847 ORTHO05D004976 3.7e-144 515.4 283 90.1
Psat3g106680 Pisum sativum HOM05D003847 ORTHO05D004976 4.5e-142 508.4 341 76.0
FAN10G3432 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.7e-141 506.5 389 66.6
Dinv32510 Davidia involucrata HOM05D003847 ORTHO05D004976 1.1e-140 503.8 284 88.0
Sed0024082 Sechium edule HOM05D003847 ORTHO05D004976 3.6e-139 498.8 284 87.7
Atru.chr5.547 Acer truncatum HOM05D003847 ORTHO05D004976 2.2e-136 489.6 284 84.5
HPP92_022235 Vanilla planifolia HOM05D003847 ORTHO05D004976 1.2e-134 483.8 314 79.6
Aa31LG5G720 Aethionema arabicum HOM05D003847 ORTHO05D004976 2.7e-134 482.6 278 85.3
FAN10G2623 Fragaria x ananassa HOM05D003847 ORTHO05D004976 9.4e-132 474.2 387 64.6
CBR_g23782 Chara braunii HOM05D003847 ORTHO05D004976 1.4e-130 470.3 391 59.6
FAN01G2116 Fragaria x ananassa HOM05D003847 ORTHO05D004976 3.8e-125 452.2 360 66.9
QL12p031965 Quercus lobata HOM05D003847 ORTHO05D004976 1.1e-116 424.1 398 55.5
arahy.Tifrunner.gnm1.ann1.U13Q33 Arachis hypogaea HOM05D003847 ORTHO05D004976 5.4e-111 405.2 283 72.4
Psat2g071920 Pisum sativum HOM05D003847 ORTHO05D004976 2.7e-110 402.9 252 77.4
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 1.0e-109 401.0 286 71.3
Hund27252 Selenicereus undatus HOM05D003847 ORTHO05D004976 4.4e-105 385.6 412 52.9
Medtr8g028680 Medicago truncatula HOM05D003847 ORTHO05D004976 3.3e-100 369.4 418 52.2
Cre07.g356150 Chlamydomonas reinhardtii HOM05D003847 ORTHO05D004976 1.1e-95 354.4 410 47.3
MSTRG.4846 Avicennia marina HOM05D003847 ORTHO05D004976 1.1e-92 344.4 237 75.1
vmacro05292 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 4.4e-89 332.4 450 44.7
Gohir.A13G099905 Gossypium hirsutum HOM05D003847 ORTHO05D004976 1.1e-82 311.2 190 81.1
PRCOL_00003828 Prasinoderma coloniale HOM05D003847 ORTHO05D004976 6.9e-82 308.5 413 43.8
Haze_26886 Corylus avellana HOM05D003847 ORTHO05D004976 8.4e-72 275.0 382 40.8
Psat1g001760 Pisum sativum HOM05D003847 ORTHO05D004976 6.0e-70 268.9 168 76.8
vmacro05290 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 5.6e-68 262.3 224 61.6
Cpa.g.sc184.22 Carica papaya HOM05D003847 ORTHO05D004976 5.5e-63 245.7 171 74.3
unitig_22.g6721 Utricularia gibba HOM05D001167 ORTHO05D001054 3.7e-59 233.0 131 83.2
Hma1.2p1_0456F.1_g156440 Hydrangea macrophylla HOM05D003847 ORTHO05D004976 1.8e-58 230.7 151 74.8
Atru.chr12.614 Acer truncatum HOM05D003847 ORTHO05D004976 3.8e-56 223.0 161 68.9
CANSAT25G3593 Cannabis sativa HOM05D003847 ORTHO05D004976 3.2e-55 219.9 158 72.8
SalBow5G1235 Salvia bowleyana HOM05D003847 ORTHO05D004976 1.4e-45 188.0 230 49.6
RcHm_v2.0_Chr3g0493601 Rosa chinensis HOM05D003847 ORTHO05D004976 6.1e-38 162.5 96 81.2
Mapoly1163s0001 Marchantia polymorpha HOM05D003847 ORTHO05D026554 1.4e-31 141.4 87 78.2
CANSAT25G0211 Cannabis sativa HOM05D003847 ORTHO05D004976 1.2e-30 138.3 86 79.1
SGA_v2.0_scaffold190G40413 Striga asiatica HOM05D003847 ORTHO05D004976 1.1e-26 125.2 126 55.6
COL.COLO4_08374 Corchorus olitorius HOM05D000137 ORTHO05D000382 1.4e-21 108.2 190 37.9
ATR0763G219 Amborella trichopoda HOM05D003847 ORTHO05D026554 5.2e-21 106.3 61 82.0
RcHm_v2.0_Chr1g0357221 Rosa chinensis HOM05D003847 ORTHO05D026554 1.4e-18 98.2 202 34.2
Lsat_1_v5_gn_8_14540 Lactuca sativa HOM05D003847 ORTHO05D005301 2.0e-17 94.4 168 38.1
MBI19_g13733_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D011443 2.7e-14 84.0 47 87.2
TAR365G1016 Trochodendron aralioides HOM05D000001 ORTHO05D000003 2.3e-13 80.9 57 73.7
vmacro05291 Vaccinium macrocarpon HOM05D003847 ORTHO05D026554 6.3e-11 72.8 48 75.0
Lsat_1_v5_gn_3_43021 Lactuca sativa HOM05D003847 ORTHO05D028506 7.0e-10 69.3 99 41.4
Lsat_1_v5_gn_2_83340 Lactuca sativa HOM05D003847 ORTHO05D028506 1.6e-09 68.2 67 52.2
Psat5g164800 Pisum sativum HOM05D003847 ORTHO05D004976 2.7e-09 67.4 107 43.9
CAN.G13.12 Capsicum annuum HOM05D002403 ORTHO05D028506 7.7e-09 65.9 51 62.7
Lsat_1_v5_gn_9_59821 Lactuca sativa HOM05D000726 ORTHO05D025737 7.7e-09 65.9 32 87.5
BcaC03g16052 Brassica carinata HOM05D003847 ORTHO05D004976 1.3e-08 65.1 38 81.6
Lsat_1_v5_gn_8_143621 Lactuca sativa HOM05D003847 ORTHO05D028506 1.3e-08 65.1 62 56.5
HanXRQChr14g0436691 Helianthus annuus HOM05D003847 ORTHO05D025737 5.0e-08 63.2 36 77.8
CAN.G1511.3 Capsicum annuum HOM05D002403 ORTHO05D002724 1.5e-07 61.6 30 90.0
RcHm_v2.0_Chr2g0131551 Rosa chinensis HOM05D003847 ORTHO05D025737 9.5e-07 58.9 37 75.7


User provided reference genes

Program Settings