Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003882 Carpinus fangiana HOM05D006032 ORTHO05D007544 2.6e-144 515.4 265 100.0
Haze_15552 Corylus avellana HOM05D006032 ORTHO05D007544 7.9e-141 503.8 265 97.4
CiPaw.01G065600 Carya illinoinensis HOM05D006032 ORTHO05D007544 4.2e-118 428.3 264 80.3
QL04p055082 Quercus lobata HOM05D006032 ORTHO05D007544 2.4e-113 412.5 266 82.0
PGR031G1164 Punica granatum HOM05D006032 ORTHO05D007544 3.5e-112 408.7 267 78.3
CANSAT56G0440 Cannabis sativa HOM05D006032 ORTHO05D007544 4.5e-112 408.3 266 78.6
Atru.chr5.551 Acer truncatum HOM05D006032 ORTHO05D007544 7.7e-112 407.5 269 77.3
Manes.01G253200 Manihot esculenta HOM05D006032 ORTHO05D007544 1.7e-111 406.4 263 78.7
GSVIVG01027006001 Vitis vinifera HOM05D006032 ORTHO05D007544 1.1e-110 403.7 266 75.2
Nn1g01650 Nelumbo nucifera HOM05D006032 ORTHO05D007544 2.7e-109 399.1 263 76.4
Ciclev10021696m.g Citrus clementina HOM05D006032 ORTHO05D007544 2.3e-108 396.0 268 76.1
Prupe.2G175800 Prunus persica HOM05D006032 ORTHO05D007544 4.4e-107 391.7 264 77.7
Cpa.g.sc184.23 Carica papaya HOM05D006032 ORTHO05D007544 7.5e-107 391.0 265 74.7
Thecc.01G353900 Theobroma cacao HOM05D006032 ORTHO05D007544 9.7e-107 390.6 269 74.0
COL.COLO4_12764 Corchorus olitorius HOM05D006032 ORTHO05D007544 1.4e-105 386.7 267 74.5
MD01G1069800 Malus domestica HOM05D006032 ORTHO05D007544 2.4e-105 386.0 265 76.2
CSS0027447 Camellia sinensis var. sinensis HOM05D006032 ORTHO05D007544 5.3e-105 384.8 265 73.6
TWI59G0434 Tripterygium wilfordii HOM05D006032 ORTHO05D007544 7.0e-105 384.4 267 74.2
CsaV3_3G008690 Cucumis sativus L. HOM05D006032 ORTHO05D007544 9.1e-105 384.0 272 72.8
MSTRG.20857 Avicennia marina HOM05D006032 ORTHO05D007544 1.6e-104 383.3 262 75.6
Nitab4.5_0006802g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 2.0e-104 382.9 265 74.7
MD07G1132700 Malus domestica HOM05D006032 ORTHO05D007544 2.7e-104 382.5 265 75.5
Nitab4.5_0002682g0080 Nicotiana tabacum HOM05D006032 ORTHO05D007544 4.5e-104 381.7 265 73.6
ClCG05G001320 Citrullus lanatus HOM05D006032 ORTHO05D007544 1.7e-103 379.8 270 73.0
FAN06G2046 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.7e-103 379.8 262 75.6
FAN06G3864 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.7e-103 379.8 262 75.6
MELO3C006088.2 Cucumis melo HOM05D006032 ORTHO05D007544 2.2e-103 379.4 272 71.7
FAN03G1341 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.2e-103 379.4 261 75.5
Hma1.2p1_2961F.1_g330870 Hydrangea macrophylla HOM05D006032 ORTHO05D007544 2.2e-103 379.4 272 72.4
Eucgr.D02319 Eucalyptus grandis HOM05D006032 ORTHO05D007544 5.0e-103 378.3 267 74.2
FAN10G0977 Fragaria x ananassa HOM05D006032 ORTHO05D007544 6.5e-103 377.9 262 75.2
FAN10G2244 Fragaria x ananassa HOM05D006032 ORTHO05D007544 6.5e-103 377.9 262 75.2
FvH4_7g15110 Fragaria vesca HOM05D006032 ORTHO05D007544 1.1e-102 377.1 262 74.8
Carub.0006s3637 Capsella rubella HOM05D006032 ORTHO05D007544 4.2e-102 375.2 267 70.4
Lalb_Chr19g0126911 Lupinus albus HOM05D006032 ORTHO05D007544 5.5e-102 374.8 260 73.1
RcHm_v2.0_Chr1g0357301 Rosa chinensis HOM05D006032 ORTHO05D007544 5.5e-102 374.8 261 74.3
DCAR_006944 Daucus carota HOM05D006032 ORTHO05D007544 7.2e-102 374.4 265 72.5
Glyma.18G237400 Glycine max HOM05D006032 ORTHO05D007544 7.2e-102 374.4 265 71.7
Sabra02G0122600 Salix brachista HOM05D006032 ORTHO05D007544 7.2e-102 374.4 270 71.5
BcaC01g06855 Brassica carinata HOM05D006032 ORTHO05D007544 1.2e-101 373.6 267 70.0
BolC3t16171H Brassica oleracea HOM05D006032 ORTHO05D007544 1.2e-101 373.6 267 70.0
Thhalv10028885m.g Eutrema salsugineum HOM05D006032 ORTHO05D007544 1.2e-101 373.6 269 70.6
Sp6g00830 Schrenkiella parvula HOM05D006032 ORTHO05D007544 1.2e-101 373.6 269 70.6
Sopen09g002430 Solanum pennellii HOM05D006032 ORTHO05D007544 2.1e-101 372.9 269 74.3
THA.LOC104817034 Tarenaya hassleriana HOM05D006032 ORTHO05D007544 2.7e-101 372.5 271 71.2
BcaB01g02152 Brassica carinata HOM05D006032 ORTHO05D007544 3.6e-101 372.1 267 70.0
C03p38990 Brassica napus HOM05D006032 ORTHO05D007544 3.6e-101 372.1 267 69.7
Potri.002G154600 Populus trichocarpa HOM05D006032 ORTHO05D007544 4.7e-101 371.7 268 72.4
Cc02_g38440 Coffea canephora HOM05D006032 ORTHO05D007544 8.0e-101 370.9 270 71.5
AL6G52090 Arabidopsis lyrata HOM05D006032 ORTHO05D007544 1.4e-100 370.2 267 69.3
CAN.G1091.3 Capsicum annuum HOM05D006032 ORTHO05D007544 1.4e-100 370.2 266 71.8
arahy.Tifrunner.gnm1.ann1.XQ5AKE Arachis hypogaea HOM05D006032 ORTHO05D007544 3.0e-100 369.0 269 71.0
Lj7A509T108 Lonicera japonica HOM05D006032 ORTHO05D007544 3.0e-100 369.0 266 71.8
AT4G01310 Arabidopsis thaliana HOM05D006032 ORTHO05D007544 5.2e-100 368.2 263 70.0
BcaB01g02282 Brassica carinata HOM05D006032 ORTHO05D007544 5.2e-100 368.2 267 68.9
CARHR249010 Cardamine hirsuta HOM05D006032 ORTHO05D007544 5.2e-100 368.2 269 68.4
Glyma.09G255500 Glycine max HOM05D006032 ORTHO05D007544 5.2e-100 368.2 265 69.8
HanXRQChr06g0170291 Helianthus annuus HOM05D006032 ORTHO05D007544 5.2e-100 368.2 264 72.3
PGSC0003DMG400001748 Solanum tuberosum HOM05D006032 ORTHO05D007544 6.8e-100 367.9 269 73.2
SalBow3G2277 Salvia bowleyana HOM05D006032 ORTHO05D007544 8.8e-100 367.5 268 72.0
arahy.Tifrunner.gnm1.ann1.S0M071 Arachis hypogaea HOM05D006032 ORTHO05D007544 1.2e-99 367.1 266 69.9
Sed0022476 Sechium edule HOM05D006032 ORTHO05D007544 1.5e-99 366.7 270 71.5
TAR629G0912 Trochodendron aralioides HOM05D006032 ORTHO05D007544 3.4e-99 365.5 261 72.0
Migut.B01790 Erythranthe guttata HOM05D006032 ORTHO05D007544 7.5e-99 364.4 265 72.1
BcaC04g24141 Brassica carinata HOM05D006032 ORTHO05D007544 2.8e-98 362.5 267 68.2
PSO782G5129 Papaver somniferum HOM05D006032 ORTHO05D007544 8.3e-98 360.9 259 69.5
Gohir.A07G140700 Gossypium hirsutum HOM05D006032 ORTHO05D007544 1.8e-97 359.8 263 70.3
ECA236G4677 Erigeron canadensis HOM05D006032 ORTHO05D007544 2.4e-97 359.4 263 69.6
Gohir.D07G146100 Gossypium hirsutum HOM05D006032 ORTHO05D007544 2.4e-97 359.4 263 70.3
Gorai.001G158300 Gossypium raimondii HOM05D006032 ORTHO05D007544 2.4e-97 359.4 263 70.3
Lsat_1_v5_gn_7_3801 Lactuca sativa HOM05D006032 ORTHO05D007544 1.2e-96 357.1 264 68.6
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 1.6e-96 356.7 248 73.0
Oeu054338.1 Olea europaea HOM05D006032 ORTHO05D007544 2.0e-96 356.3 262 71.0
Phvul.008G059200 Phaseolus vulgaris HOM05D006032 ORTHO05D007544 3.5e-96 355.5 266 69.2
Lj4g0026145 Lotus japonicus HOM05D006032 ORTHO05D007544 2.3e-95 352.8 263 69.6
PSO478G3538 Papaver somniferum HOM05D006032 ORTHO05D007544 2.9e-95 352.4 262 67.9
SGA_v2.0_scaffold95G28814 Striga asiatica HOM05D006032 ORTHO05D007544 2.9e-95 352.4 274 68.6
Aqoxy7G00233 Aquilegia oxysepala HOM05D006032 ORTHO05D007544 6.6e-95 351.3 264 69.3
VMungo1383G0296 Vigna mungo HOM05D006032 ORTHO05D007544 1.1e-94 350.5 267 68.9
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 4.2e-94 348.6 252 69.8
Rhsim12G0138500 Rhododendron simsii HOM05D006032 ORTHO05D007544 9.5e-94 347.4 266 66.2
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 1.2e-93 347.1 252 69.4
Ca_00819_v3 Cicer arietinum L. HOM05D006032 ORTHO05D007544 1.2e-93 347.1 265 68.7
Psat3g107160 Pisum sativum HOM05D006032 ORTHO05D007544 1.2e-93 347.1 267 68.5
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 6.1e-93 344.7 251 70.9
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 6.1e-93 344.7 251 70.9
CDE04G3178 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 1.0e-92 344.0 270 67.0
Medtr7g078800 Medicago truncatula HOM05D006032 ORTHO05D007544 1.8e-92 343.2 265 68.3
TPR.G22296 Trifolium pratense HOM05D006032 ORTHO05D007544 1.8e-92 343.2 267 68.5
AUR62022608 Chenopodium quinoa HOM05D006032 ORTHO05D007544 2.3e-92 342.8 262 67.9
AUR62004402 Chenopodium quinoa HOM05D006032 ORTHO05D007544 5.2e-92 341.7 262 67.6
Sc01g0003280 Simmondsia chinensis HOM05D006032 ORTHO05D007544 5.2e-92 341.7 261 65.5
ATR0661G584 Amborella trichopoda HOM05D006032 ORTHO05D007544 3.4e-91 339.0 249 68.3
CDE12G0723 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 2.2e-90 336.3 223 74.0
Potri.014G089100 Populus trichocarpa HOM05D006032 ORTHO05D007544 1.1e-89 334.0 265 66.4
EL10Ac1g00366 Beta vulgaris HOM05D006032 ORTHO05D007544 2.5e-86 322.8 309 57.9
unitig_22.g5344 Utricularia gibba HOM05D003213 ORTHO05D003693 2.0e-83 313.2 227 69.6
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 1.3e-82 310.5 262 64.5
Peaxi162Scf00815g00338 Petunia axillaris HOM05D006032 ORTHO05D007544 7.0e-81 304.7 183 82.5
Hund27251 Selenicereus undatus HOM05D006032 ORTHO05D007544 4.6e-80 302.0 239 66.1
HPP92_025634 Vanilla planifolia HOM05D006032 ORTHO05D007544 1.0e-79 300.8 214 65.9
vmacro20901 Vaccinium macrocarpon HOM05D006032 ORTHO05D007544 4.3e-78 295.4 264 59.1
Os03g0125000 Oryza sativa ssp. japonica HOM05D006032 ORTHO05D007544 9.5e-78 294.3 217 64.1
Zm00001eb001840 Zea mays HOM05D006032 ORTHO05D007544 3.6e-77 292.4 220 64.5
FAN01G2970 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.1e-76 290.8 194 76.3
Dinv32511 Davidia involucrata HOM05D006032 ORTHO05D007544 5.8e-75 285.0 227 66.5
A03p31970 Brassica napus HOM05D006032 ORTHO05D007544 1.6e-72 276.9 199 70.4
BraA03t12369Z Brassica rapa HOM05D006032 ORTHO05D007544 1.6e-72 276.9 199 70.4
MBI04_g41504_MAGBIO Magnolia biondii HOM05D006032 ORTHO05D007544 1.4e-68 263.8 245 58.4
Mapoly0001s0334 Marchantia polymorpha HOM05D006032 ORTHO05D007544 2.4e-65 253.1 233 55.8
AagrBONN_evm.TU.Sc2ySwM_228.1445 Anthoceros agrestis HOM05D006032 ORTHO05D007544 3.5e-64 249.2 191 61.8
Pp3c1_25850 Physcomitrium patens HOM05D006032 ORTHO05D007544 5.1e-63 245.4 264 50.4
Pp3c2_17110 Physcomitrium patens HOM05D006032 ORTHO05D007544 1.1e-62 244.2 212 55.2
SMO358G0099 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 2.1e-61 240.0 180 62.2
Solyc09g007560.4 Solanum lycopersicum HOM05D006032 ORTHO05D007544 3.4e-59 232.6 179 72.1
MSTRG.17292 Avicennia marina HOM05D006032 ORTHO05D007544 1.1e-52 211.1 133 79.7
SEGI_08351 Sequoiadendron giganteum HOM05D006032 ORTHO05D007544 1.8e-52 210.3 141 69.5
C02p38190 Brassica napus HOM05D006032 ORTHO05D007544 2.0e-43 180.3 265 43.8
BolC2t09834H Brassica oleracea HOM05D006032 ORTHO05D007544 2.0e-43 180.3 265 43.8
BcaC03g16053 Brassica carinata HOM05D006032 ORTHO05D007544 3.4e-43 179.5 265 43.8
Haze_27649 Corylus avellana HOM05D006032 ORTHO05D007544 1.7e-42 177.2 153 53.6
Rhsim01G0165400 Rhododendron simsii HOM05D006032 ORTHO05D007544 1.3e-39 167.5 158 59.5
COL.COLO4_27391 Corchorus olitorius HOM05D006032 ORTHO05D007544 2.3e-39 166.8 115 74.8
Sabra14G0064700 Salix brachista HOM05D006032 ORTHO05D007544 9.6e-38 161.4 115 70.4
Cfa021143 Carpinus fangiana HOM05D006032 ORTHO05D001488 4.8e-37 159.1 198 39.9
Actinidia02824 Actinidia chinensis HOM05D006032 ORTHO05D007544 1.8e-28 130.6 89 73.0
Nitab4.5_0000681g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.9e-25 120.6 76 77.6
SMO196G0051 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 9.3e-25 118.2 179 34.6
Nitab4.5_0000681g0060 Nicotiana tabacum HOM05D006032 ORTHO05D007544 2.8e-21 106.7 70 74.3
VMungo1309G2152 Vigna mungo HOM05D006032 ORTHO05D007544 1.3e-18 97.8 79 62.0
VMungo0647G0507 Vigna mungo HOM05D006032 ORTHO05D007227 6.7e-15 85.5 66 63.6
Cfa024600 Carpinus fangiana HOM05D006032 ORTHO05D122942 2.5e-14 83.6 168 30.4
Rhsim12G0138600 Rhododendron simsii HOM05D006032 ORTHO05D007544 8.2e-13 78.6 86 54.7
Psat2g092280 Pisum sativum HOM05D006032 ORTHO05D007544 2.4e-12 77.0 60 61.7
Dinv43855 Davidia involucrata HOM05D006032 ORTHO05D007544 5.0e-10 69.3 39 79.5
unitig_8.g3788 Utricularia gibba HOM05D006032 ORTHO05D007544 2.1e-08 63.9 102 39.2
FvH4_5g19211 Fragaria vesca HOM05D006032 ORTHO05D197553 1.8e-07 60.8 45 66.7
AagrBONN_evm.TU.Sc2ySwM_117.2676 Anthoceros agrestis HOM05D002864 ORTHO05D008485 8.8e-07 58.5 178 30.3
Cfa027004 Carpinus fangiana HOM05D001556 ORTHO05D001505 2.6e-06 57.0 139 27.3


User provided reference genes

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