Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003875 Carpinus fangiana HOM05D004687 ORTHO05D006002 0.0e+00 1132.5 588 100.0
Haze_15561 Corylus avellana HOM05D004687 ORTHO05D006002 2.4e-238 828.9 521 86.6
CiPaw.02G034500 Carya illinoinensis HOM05D004687 ORTHO05D006002 5.5e-219 764.6 556 76.3
QL04p055402 Quercus lobata HOM05D004687 ORTHO05D006002 1.5e-200 703.4 660 62.7
Dinv32519 Davidia involucrata HOM05D004687 ORTHO05D006002 3.5e-165 585.9 562 59.3
TAR374G1208 Trochodendron aralioides HOM05D004687 ORTHO05D006002 2.2e-159 566.6 570 58.4
Prupe.2G177100 Prunus persica HOM05D004687 ORTHO05D006002 6.6e-156 555.1 556 59.0
Atru.chr5.577 Acer truncatum HOM05D004687 ORTHO05D006002 3.1e-153 546.2 557 58.0
Atru.chr5.560 Acer truncatum HOM05D004687 ORTHO05D006002 5.8e-152 542.0 557 57.8
CANSAT56G3669 Cannabis sativa HOM05D004687 ORTHO05D006002 7.1e-150 535.0 555 56.0
Glyma.16G032000 Glycine max HOM05D004687 ORTHO05D006002 3.8e-143 512.7 556 55.2
GSVIVG01026963001 Vitis vinifera HOM05D004687 ORTHO05D006002 1.1e-142 511.1 565 55.4
CSS0026327 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 3.3e-139 499.6 558 55.0
Manes.01G252600 Manihot esculenta HOM05D004687 ORTHO05D006002 2.1e-138 496.9 561 53.5
Lalb_Chr10g0096671 Lupinus albus HOM05D004687 ORTHO05D006002 5.3e-137 492.3 561 52.8
Ciclev10019565m.g Citrus clementina HOM05D004687 ORTHO05D006002 3.4e-136 489.6 557 53.0
Lj3g0008911 Lotus japonicus HOM05D004687 ORTHO05D006002 5.8e-136 488.8 556 52.3
Sabra14G0065300 Salix brachista HOM05D004687 ORTHO05D006002 2.9e-135 486.5 537 54.0
Lj7A508T42 Lonicera japonica HOM05D004687 ORTHO05D006002 3.2e-134 483.0 560 52.1
Phvul.010G104100 Phaseolus vulgaris HOM05D004687 ORTHO05D006002 4.2e-134 482.6 557 53.1
Nn1g01677 Nelumbo nucifera HOM05D004687 ORTHO05D006002 9.3e-134 481.5 557 52.8
VMungo0331G0070 Vigna mungo HOM05D004687 ORTHO05D006002 2.1e-130 470.3 558 53.6
Medtr8g028580 Medicago truncatula HOM05D004687 ORTHO05D006002 3.7e-130 469.5 556 51.3
RcHm_v2.0_Chr1g0357651 Rosa chinensis HOM05D004687 ORTHO05D006002 3.7e-130 469.5 577 53.6
TWI14G1112 Tripterygium wilfordii HOM05D004687 ORTHO05D006002 4.0e-129 466.1 557 52.6
Thecc.01G352900 Theobroma cacao HOM05D004687 ORTHO05D006002 7.6e-128 461.8 558 50.9
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 2.9e-127 459.9 566 50.5
arahy.Tifrunner.gnm1.ann1.PSKN5N Arachis hypogaea HOM05D004687 ORTHO05D006002 6.5e-127 458.8 566 50.4
Cpa.g.sc184.31 Carica papaya HOM05D004687 ORTHO05D006002 1.4e-126 457.6 558 51.3
FAN10G0227 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.5e-126 456.8 576 51.7
FvH4_7g15320 Fragaria vesca HOM05D004687 ORTHO05D006002 3.2e-126 456.4 576 51.9
FAN06G2065 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.2e-126 456.4 576 51.9
Psat4g212240 Pisum sativum HOM05D004687 ORTHO05D006002 3.2e-126 456.4 557 51.5
FAN06G2774 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.5e-125 453.0 576 51.7
MD01G1070600 Malus domestica HOM05D004687 ORTHO05D006002 1.1e-123 448.0 559 51.2
Cc02_g38540 Coffea canephora HOM05D004687 ORTHO05D006002 1.5e-123 447.6 569 48.9
Nitab4.5_0000915g0140 Nicotiana tabacum HOM05D004687 ORTHO05D006002 5.7e-123 445.7 574 49.5
Sed0003221 Sechium edule HOM05D004687 ORTHO05D006002 2.8e-122 443.4 558 49.6
COL.COLO4_12774 Corchorus olitorius HOM05D004687 ORTHO05D006002 6.3e-122 442.2 559 49.7
Peaxi162Scf00020g01410 Petunia axillaris HOM05D004687 ORTHO05D006002 8.2e-122 441.8 563 49.4
Gorai.007G103300 Gossypium raimondii HOM05D004687 ORTHO05D006002 6.9e-121 438.7 558 49.1
Ca_03498_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 4.5e-120 436.0 558 49.8
ClCG06G003410 Citrullus lanatus HOM05D004687 ORTHO05D006002 4.5e-120 436.0 563 50.1
Eucgr.D02323 Eucalyptus grandis HOM05D004687 ORTHO05D006002 4.5e-120 436.0 558 50.2
Aqoxy7G00187 Aquilegia oxysepala HOM05D004687 ORTHO05D006002 7.7e-120 435.3 578 47.2
Duzib138G0011 Durio zibethinus HOM05D004687 ORTHO05D006002 7.7e-120 435.3 560 50.7
Gohir.D11G097000 Gossypium hirsutum HOM05D004687 ORTHO05D006002 1.3e-119 434.5 559 49.4
TPR.G28289 Trifolium pratense HOM05D004687 ORTHO05D006002 5.0e-119 432.6 558 49.3
Potri.014G089800 Populus trichocarpa HOM05D004687 ORTHO05D006002 6.5e-119 432.2 525 50.5
Sc01g0003240 Simmondsia chinensis HOM05D004687 ORTHO05D006002 1.0e-116 424.9 564 47.3
Solyc01g095090.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 1.0e-116 424.9 561 49.6
PGSC0003DMG400000194 Solanum tuberosum HOM05D004687 ORTHO05D006002 1.4e-116 424.5 618 46.6
PGR031G1931 Punica granatum HOM05D004687 ORTHO05D006002 2.3e-116 423.7 566 48.4
Rhsim07G0010800 Rhododendron simsii HOM05D004687 ORTHO05D006002 8.2e-114 415.2 606 44.7
Oeu063679.1 Olea europaea HOM05D004687 ORTHO05D006002 4.1e-113 412.9 567 48.0
MSTRG.20861 Avicennia marina HOM05D004687 ORTHO05D006002 9.1e-113 411.8 567 45.7
Nitab4.5_0009238g0010 Nicotiana tabacum HOM05D004687 ORTHO05D006002 1.2e-112 411.4 559 48.7
Migut.B01796 Erythranthe guttata HOM05D004687 ORTHO05D006002 2.5e-110 403.7 557 46.1
MELO3C021180.2 Cucumis melo HOM05D004687 ORTHO05D006002 7.2e-110 402.1 582 46.6
DCAR_006947 Daucus carota HOM05D004687 ORTHO05D006002 1.6e-109 401.0 538 48.9
FAN10G4173 Fragaria x ananassa HOM05D004687 ORTHO05D006002 4.7e-109 399.4 575 47.5
FAN01G0098 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.1e-105 386.7 502 51.2
PSO478G3840 Papaver somniferum HOM05D004687 ORTHO05D006002 8.5e-103 378.6 571 45.0
MBI04_g26968_MAGBIO Magnolia biondii HOM05D004687 ORTHO05D006002 2.5e-102 377.1 568 44.4
CSS0036615 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 2.1e-101 374.0 523 48.0
Actinidia20159 Actinidia chinensis HOM05D004687 ORTHO05D006002 3.7e-98 363.2 565 45.5
CsaV3_6G000900 Cucumis sativus L. HOM05D004687 ORTHO05D006002 4.8e-98 362.8 516 47.1
PSO266G0021 Papaver somniferum HOM05D004687 ORTHO05D006002 2.0e-96 357.5 572 44.6
CSS0041346 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 5.9e-96 355.9 460 51.1
SalBow3G3455 Salvia bowleyana HOM05D004687 ORTHO05D006002 1.0e-95 355.1 563 41.7
Peaxi162Scf00403g00830 Petunia axillaris HOM05D004687 ORTHO05D006002 1.6e-93 347.8 496 47.0
THA.LOC104817038 Tarenaya hassleriana HOM05D004687 ORTHO05D006002 2.3e-92 344.0 557 42.7
Lsat_1_v5_gn_7_3881 Lactuca sativa HOM05D004687 ORTHO05D006002 8.8e-92 342.0 579 41.8
Sopen05g028410 Solanum pennellii HOM05D004687 ORTHO05D006002 8.8e-92 342.0 490 46.3
Hund27243 Selenicereus undatus HOM05D004687 ORTHO05D006002 1.5e-91 341.3 568 42.6
Solyc05g050020.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 2.6e-91 340.5 489 45.6
PGSC0003DMG400033881 Solanum tuberosum HOM05D004687 ORTHO05D006002 5.7e-91 339.3 506 46.2
Prupe.2G177000 Prunus persica HOM05D004687 ORTHO05D006002 7.2e-86 322.4 491 45.4
CSS0021310 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 4.7e-85 319.7 523 43.8
SGA_v2.0_scaffold95G28807 Striga asiatica HOM05D004687 ORTHO05D006002 7.5e-83 312.4 571 38.7
Gohir.A11G092200 Gossypium hirsutum HOM05D004687 ORTHO05D006002 9.8e-83 312.0 454 45.2
MD01G1070500 Malus domestica HOM05D004687 ORTHO05D006002 3.5e-80 303.5 491 41.8
FAN03G2011 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.3e-79 301.6 427 49.2
ECA236G1242 Erigeron canadensis HOM05D004687 ORTHO05D006002 1.7e-79 301.2 560 38.4
Aa31LG5G750 Aethionema arabicum HOM05D004687 ORTHO05D006002 8.0e-77 292.4 561 40.1
unitig_699.g19806 Utricularia gibba HOM05D004687 ORTHO05D006002 3.0e-76 290.4 605 38.2
Carub.0006s3633 Capsella rubella HOM05D004687 ORTHO05D006002 5.2e-76 289.7 558 37.5
AT4G01270 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 8.9e-76 288.9 558 38.4
Thhalv10029490m.g Eutrema salsugineum HOM05D004687 ORTHO05D006002 2.9e-74 283.9 561 39.4
BraA03t12367Z Brassica rapa HOM05D004687 ORTHO05D006002 2.4e-73 280.8 556 38.5
A03p31950 Brassica napus HOM05D004687 ORTHO05D006002 4.1e-73 280.0 556 38.5
BolC3t16169H Brassica oleracea HOM05D004687 ORTHO05D006002 4.1e-73 280.0 555 39.3
Sp6g00860 Schrenkiella parvula HOM05D004687 ORTHO05D006002 7.0e-73 279.3 558 38.0
AUR62022616 Chenopodium quinoa HOM05D004687 ORTHO05D006002 2.7e-72 277.3 507 40.4
BcaC01g06853 Brassica carinata HOM05D004687 ORTHO05D006002 1.0e-71 275.4 555 38.7
C03p38970 Brassica napus HOM05D004687 ORTHO05D006002 8.6e-71 272.3 555 38.6
AL6G52120 Arabidopsis lyrata HOM05D004687 ORTHO05D006002 1.5e-70 271.6 558 36.4
HanXRQChr06g0170331 Helianthus annuus HOM05D004687 ORTHO05D006002 1.9e-70 271.2 555 35.9
CARHR249040 Cardamine hirsuta HOM05D004687 ORTHO05D006002 2.5e-70 270.8 561 37.1
BcaB01g02150 Brassica carinata HOM05D004687 ORTHO05D006002 5.6e-70 269.6 555 38.2
ATR0661G462 Amborella trichopoda HOM05D004687 ORTHO05D006002 1.0e-68 265.4 575 37.4
Ah.05g180180 Amaranthus hybridus HOM05D004687 ORTHO05D006002 1.8e-68 264.6 254 59.1
BraA09t35739Z Brassica rapa HOM05D004687 ORTHO05D006002 2.3e-68 264.2 560 37.7
vmacro13232 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 5.2e-68 263.1 289 54.3
A09p00090 Brassica napus HOM05D004687 ORTHO05D006002 1.2e-67 261.9 559 37.4
BcaC04g24137 Brassica carinata HOM05D004687 ORTHO05D006002 2.2e-66 257.7 559 37.4
C09p00700 Brassica napus HOM05D004687 ORTHO05D006002 2.2e-66 257.7 559 37.4
BolC9t53004H Brassica oleracea HOM05D004687 ORTHO05D006002 2.2e-66 257.7 559 37.4
HanXRQChr04g0120761 Helianthus annuus HOM05D004687 ORTHO05D006002 1.0e-63 248.8 558 35.3
Lalb_Chr17g0339031 Lupinus albus HOM05D004687 ORTHO05D006002 3.9e-63 246.9 361 46.0
AUR62004410 Chenopodium quinoa HOM05D004687 ORTHO05D006002 1.5e-62 245.0 560 35.4
SEGI_33633 Sequoiadendron giganteum HOM05D004687 ORTHO05D006002 5.6e-62 243.0 575 35.1
Lalb_Chr17g0339021 Lupinus albus HOM05D004687 ORTHO05D006002 4.6e-56 223.4 192 63.0
Zm00001eb416420 Zea mays HOM05D004687 ORTHO05D006002 4.6e-56 223.4 574 34.3
Os08g0151700 Oryza sativa ssp. japonica HOM05D004687 ORTHO05D006002 1.0e-55 222.2 575 31.3
Nitab4.5_0002262g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 2.5e-54 217.6 492 37.0
BcaB01g02289 Brassica carinata HOM05D004687 ORTHO05D006002 3.3e-54 217.2 594 35.2
Nitab4.5_0003779g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 3.3e-54 217.2 490 37.8
RcHm_v2.0_Chr2g0111671 Rosa chinensis HOM05D004687 ORTHO05D006002 1.6e-53 214.9 578 34.3
EL10Ac1g00358 Beta vulgaris HOM05D004687 ORTHO05D006002 2.3e-52 211.1 555 33.9
FAN19G0767 Fragaria x ananassa HOM05D004687 ORTHO05D006002 8.4e-50 202.6 231 52.8
FvH4_1g19860 Fragaria vesca HOM05D004687 ORTHO05D006002 5.4e-49 199.9 577 31.7
FAN26G2006 Fragaria x ananassa HOM05D004687 ORTHO05D006002 5.4e-49 199.9 577 32.2
CDE11G0743 Ceratophyllum demersum HOM05D002440 ORTHO05D002576 2.1e-48 198.0 441 35.1
Actinidia10067 Actinidia chinensis HOM05D004687 ORTHO05D006002 6.0e-48 196.4 385 40.0
FAN28G2978 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.0e-47 195.7 577 31.5
Potri.002G164000 Populus trichocarpa HOM05D004687 ORTHO05D006002 2.7e-40 171.0 248 43.1
vmacro13233 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 4.6e-40 170.2 144 61.8
Pp3c23_12760 Physcomitrium patens HOM05D004687 ORTHO05D006002 1.3e-37 162.2 588 28.6
FAN23G1626 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.1e-37 161.4 391 34.3
Sopen01g038880 Solanum pennellii HOM05D004687 ORTHO05D006002 4.8e-37 160.2 348 38.5
SGA_v2.0_scaffold95G28804 Striga asiatica HOM05D004687 ORTHO05D006002 3.1e-36 157.5 246 41.5
SHI13367 Sapria himalayana HOM05D004687 ORTHO05D006002 9.9e-35 152.5 432 33.6
Actinidia20138 Actinidia chinensis HOM05D004687 ORTHO05D006002 3.8e-34 150.6 118 65.3
SMO147G0044 Selaginella moellendorffii HOM05D004687 ORTHO05D006002 4.6e-32 143.7 372 30.9
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 1.1e-28 132.5 98 62.2
Aa31sc194G60 Aethionema arabicum HOM05D004687 ORTHO05D006002 1.8e-23 115.2 134 51.5
SHI13366 Sapria himalayana HOM05D004687 ORTHO05D006002 5.6e-22 110.2 120 47.5
ATR0804G028 Amborella trichopoda HOM05D004687 ORTHO05D006002 1.4e-20 105.5 132 47.0
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 1.5e-19 102.1 100 55.0
Ca_03421_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 5.5e-17 93.6 123 48.0
QL06p033484 Quercus lobata HOM05D004687 ORTHO05D006002 2.3e-15 88.2 84 52.4
CBR_g45680 Chara braunii HOM05D004687 ORTHO05D006002 3.3e-14 84.3 287 23.7
MD01G1071100 Malus domestica HOM05D004687 ORTHO05D006002 4.5e-11 73.9 66 59.1
Mapoly0091s0017 Marchantia polymorpha HOM05D004687 ORTHO05D006002 1.9e-09 68.6 261 26.4
BraA03t10099Z Brassica rapa HOM05D004687 ORTHO05D016135 3.3e-06 57.8 70 47.1
A03p47890 Brassica napus HOM05D004687 ORTHO05D016135 5.7e-06 57.0 70 47.1
BraA03t13898Z Brassica rapa HOM05D004687 ORTHO05D016135 9.7e-06 56.2 70 47.1


User provided reference genes

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