Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003871 Carpinus fangiana HOM05D006382 ORTHO05D008938 0.0e+00 1098.2 527 100.0
Haze_15566 Corylus avellana HOM05D006382 ORTHO05D008938 3.1e-282 974.5 542 88.4
CiPaw.01G067600 Carya illinoinensis HOM05D006382 ORTHO05D008938 4.4e-260 901.0 514 83.7
QL04p055600 Quercus lobata HOM05D006382 ORTHO05D008938 8.9e-245 850.1 514 80.2
Prupe.2G177700 Prunus persica HOM05D006382 ORTHO05D008938 1.6e-241 839.3 517 77.8
MD01G1071500 Malus domestica HOM05D006382 ORTHO05D008938 6.9e-237 823.9 516 76.6
RcHm_v2.0_Chr1g0357731 Rosa chinensis HOM05D006382 ORTHO05D008938 3.4e-236 821.6 515 76.5
Actinidia20164 Actinidia chinensis HOM05D006382 ORTHO05D008938 1.3e-235 819.7 513 78.2
Dinv43864 Davidia involucrata HOM05D006382 ORTHO05D008938 1.3e-235 819.7 520 77.9
Thecc.01G352300 Theobroma cacao HOM05D006382 ORTHO05D008938 3.8e-235 818.1 518 76.3
TWI59G0052 Tripterygium wilfordii HOM05D006382 ORTHO05D008938 4.9e-235 817.8 499 77.2
GSVIVG01026968001 Vitis vinifera HOM05D006382 ORTHO05D008938 1.6e-233 812.8 511 76.3
Duzib133G1372 Durio zibethinus HOM05D006382 ORTHO05D008938 1.3e-232 809.7 521 75.0
FvH4_7g15410 Fragaria vesca HOM05D006382 ORTHO05D008938 1.7e-232 809.3 516 75.6
FAN01G1899 Fragaria x ananassa HOM05D006382 ORTHO05D008938 1.7e-232 809.3 527 74.0
CSS0031254 Camellia sinensis var. sinensis HOM05D006382 ORTHO05D008938 3.9e-232 808.1 527 75.0
MELO3C006077.2 Cucumis melo HOM05D006382 ORTHO05D008938 5.1e-232 807.7 518 76.3
Lj1g0001840 Lotus japonicus HOM05D006382 ORTHO05D008938 1.9e-231 805.8 527 74.4
Gohir.A11G092400 Gossypium hirsutum HOM05D006382 ORTHO05D008938 7.3e-231 803.9 520 75.4
Nn1g01689 Nelumbo nucifera HOM05D006382 ORTHO05D008938 1.3e-230 803.1 490 77.6
Atru.chr5.564 Acer truncatum HOM05D006382 ORTHO05D008938 2.8e-230 802.0 472 80.3
ClCG05G001220 Citrullus lanatus HOM05D006382 ORTHO05D008938 3.6e-230 801.6 516 75.4
Hma1.2p1_0335F.1_g128860 Hydrangea macrophylla HOM05D006382 ORTHO05D008938 4.8e-230 801.2 465 81.5
Lalb_Chr19g0126881 Lupinus albus HOM05D006382 ORTHO05D008938 1.4e-229 799.7 507 74.4
Ciclev10019743m.g Citrus clementina HOM05D006382 ORTHO05D008938 3.1e-229 798.5 498 75.9
CsaV3_3G008570 Cucumis sativus L. HOM05D006382 ORTHO05D008938 2.0e-228 795.8 518 74.7
Gorai.007G103500 Gossypium raimondii HOM05D006382 ORTHO05D008938 2.0e-228 795.8 519 74.6
Cpa.g.sc11.72 Carica papaya HOM05D006382 ORTHO05D008938 3.4e-228 795.0 506 75.7
Sed0009049 Sechium edule HOM05D006382 ORTHO05D008938 3.4e-228 795.0 458 80.1
Potri.002G164700 Populus trichocarpa HOM05D006382 ORTHO05D008938 4.5e-228 794.7 462 80.1
VMungo1383G3370 Vigna mungo HOM05D006382 ORTHO05D008938 4.5e-228 794.7 530 72.1
CSS0000318 Camellia sinensis var. sinensis HOM05D006382 ORTHO05D008938 1.7e-227 792.7 520 75.4
FAN06G2792 Fragaria x ananassa HOM05D006382 ORTHO05D008938 4.9e-227 791.2 545 71.4
Phvul.008G058200 Phaseolus vulgaris HOM05D006382 ORTHO05D008938 4.9e-227 791.2 530 72.3
Eucgr.D02325 Eucalyptus grandis HOM05D006382 ORTHO05D008938 3.2e-226 788.5 519 74.2
vmacro13226 Vaccinium macrocarpon HOM05D006382 ORTHO05D008938 2.1e-225 785.8 489 77.3
Rhsim07G0010300 Rhododendron simsii HOM05D006382 ORTHO05D008938 3.9e-224 781.6 511 75.0
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 1.5e-223 779.6 499 77.0
Glyma.18G238400 Glycine max HOM05D006382 ORTHO05D008938 1.9e-223 779.2 511 72.4
Lj9C589T7 Lonicera japonica HOM05D006382 ORTHO05D008938 4.3e-223 778.1 498 75.1
Medtr7g079030 Medicago truncatula HOM05D006382 ORTHO05D008938 4.3e-223 778.1 528 71.8
Nitab4.5_0000915g0130 Nicotiana tabacum HOM05D006382 ORTHO05D008938 7.4e-223 777.3 506 72.7
Sabra02G0146800 Salix brachista HOM05D006382 ORTHO05D008938 7.4e-223 777.3 471 76.9
SGA_v2.0_scaffold4G02278 Striga asiatica HOM05D006382 ORTHO05D008938 7.4e-223 777.3 521 71.4
THA.LOC104827604 Tarenaya hassleriana HOM05D006382 ORTHO05D008938 1.6e-222 776.2 523 71.9
CANSAT56G1207 Cannabis sativa HOM05D006382 ORTHO05D008938 2.1e-222 775.8 516 72.3
Atru.BG.55.p Acer truncatum HOM05D006382 ORTHO05D008938 4.8e-222 774.6 452 81.2
MSTRG.17299 Avicennia marina HOM05D006382 ORTHO05D008938 1.4e-221 773.1 512 73.0
Glyma.09G254600 Glycine max HOM05D006382 ORTHO05D008938 1.4e-221 773.1 523 71.9
AL5G43900 Arabidopsis lyrata HOM05D006382 ORTHO05D008938 3.1e-221 771.9 458 77.5
FAN03G1976 Fragaria x ananassa HOM05D006382 ORTHO05D008938 2.6e-220 768.8 503 73.6
Oeu063675.1 Olea europaea HOM05D006382 ORTHO05D008938 9.9e-220 766.9 517 73.7
Peaxi162Scf00020g01516 Petunia axillaris HOM05D006382 ORTHO05D008938 9.9e-220 766.9 502 72.5
Psat3g105480 Pisum sativum HOM05D006382 ORTHO05D008938 6.4e-219 764.2 521 71.0
Carub.0005s2823 Capsella rubella HOM05D006382 ORTHO05D008938 1.4e-218 763.1 458 76.4
TPR.G35789 Trifolium pratense HOM05D006382 ORTHO05D008938 1.4e-218 763.1 528 69.9
CARHR171860 Cardamine hirsuta HOM05D006382 ORTHO05D008938 5.5e-218 761.1 519 71.1
PSO266G0056 Papaver somniferum HOM05D006382 ORTHO05D008938 5.5e-218 761.1 503 72.8
Thhalv10005890m.g Eutrema salsugineum HOM05D006382 ORTHO05D008938 9.3e-218 760.4 498 72.5
Sp5g01870 Schrenkiella parvula HOM05D006382 ORTHO05D008938 1.6e-217 759.6 472 75.6
PSO384G0256 Papaver somniferum HOM05D006382 ORTHO05D008938 3.5e-217 758.4 519 71.1
AT3G61540 Arabidopsis thaliana HOM05D006382 ORTHO05D008938 4.6e-217 758.1 519 71.1
PGSC0003DMG400000065 Solanum tuberosum HOM05D006382 ORTHO05D008938 6.0e-217 757.7 470 76.4
Aqoxy7G00230 Aquilegia oxysepala HOM05D006382 ORTHO05D008938 3.0e-216 755.4 454 78.4
BraA07t30197Z Brassica rapa HOM05D006382 ORTHO05D008938 5.1e-216 754.6 478 73.8
BcaB02g07372 Brassica carinata HOM05D006382 ORTHO05D008938 1.1e-215 753.4 497 71.8
Solyc01g095120.3 Solanum lycopersicum HOM05D006382 ORTHO05D008938 1.1e-215 753.4 470 75.3
C06p27550 Brassica napus HOM05D006382 ORTHO05D008938 1.9e-215 752.7 478 73.8
BcaC08g45134 Brassica carinata HOM05D006382 ORTHO05D008938 2.5e-215 752.3 481 73.4
A07p25560 Brassica napus HOM05D006382 ORTHO05D008938 2.5e-215 752.3 478 74.1
Ca_07943_v3 Cicer arietinum L. HOM05D006382 ORTHO05D008938 2.5e-215 752.3 456 76.8
Sopen01g038910 Solanum pennellii HOM05D006382 ORTHO05D008938 2.5e-215 752.3 499 72.7
arahy.Tifrunner.gnm1.ann1.FF5BCH Arachis hypogaea HOM05D006382 ORTHO05D008938 3.3e-215 751.9 527 69.8
Sc01g0003200 Simmondsia chinensis HOM05D006382 ORTHO05D008938 3.3e-215 751.9 465 74.4
arahy.Tifrunner.gnm1.ann1.Z348XU Arachis hypogaea HOM05D006382 ORTHO05D008938 7.4e-215 750.7 483 73.9
EL10Ac1g00353 Beta vulgaris HOM05D006382 ORTHO05D008938 7.4e-215 750.7 511 70.8
BolC6t37923H Brassica oleracea HOM05D006382 ORTHO05D008938 7.4e-215 750.7 478 73.8
FAN06G0271 Fragaria x ananassa HOM05D006382 ORTHO05D008938 7.4e-215 750.7 465 76.1
SalBow3G4256 Salvia bowleyana HOM05D006382 ORTHO05D008938 1.6e-214 749.6 527 69.8
HanXRQChr17g0562131 Helianthus annuus HOM05D006382 ORTHO05D008938 2.8e-214 748.8 467 74.7
Nitab4.5_0010695g0050 Nicotiana tabacum HOM05D006382 ORTHO05D008938 4.8e-214 748.0 520 69.8
DCAR_005361 Daucus carota HOM05D006382 ORTHO05D008938 9.0e-213 743.8 458 74.9
Cc02_g38570 Coffea canephora HOM05D006382 ORTHO05D008938 3.8e-211 738.4 478 74.9
HPP92_008800 Vanilla planifolia HOM05D006382 ORTHO05D008938 1.0e-208 730.3 451 74.3
AUR62004414 Chenopodium quinoa HOM05D006382 ORTHO05D008938 1.8e-208 729.6 522 67.6
ECA234G1133 Erigeron canadensis HOM05D006382 ORTHO05D008938 7.4e-207 724.2 452 75.0
MBI06_g33533_MAGBIO Magnolia biondii HOM05D006382 ORTHO05D008938 7.4e-207 724.2 452 74.3
ATR0721G029 Amborella trichopoda HOM05D006382 ORTHO05D008938 9.7e-207 723.8 456 75.0
CDE10G0280 Ceratophyllum demersum HOM05D006382 ORTHO05D008938 4.1e-205 718.4 465 70.8
CANSAT56G3955 Cannabis sativa HOM05D006382 ORTHO05D008938 3.6e-201 705.3 463 73.2
Lsat_1_v5_gn_4_35160 Lactuca sativa HOM05D006382 ORTHO05D008938 4.6e-201 704.9 518 66.6
Aa31LG10G15440 Aethionema arabicum HOM05D006382 ORTHO05D008938 3.2e-194 682.2 422 75.6
COL.COLO4_12779 Corchorus olitorius HOM05D006382 ORTHO05D008938 2.3e-184 649.4 466 70.0
unitig_747.g21323 Utricularia gibba HOM05D000887 ORTHO05D000908 9.7e-183 644.0 501 63.9
Pp3c20_22770 Physcomitrium patens HOM05D006382 ORTHO05D008938 2.0e-180 636.3 460 63.5
AUR62022620 Chenopodium quinoa HOM05D006382 ORTHO05D008938 1.7e-179 633.3 493 63.9
Ah.05g180140 Amaranthus hybridus HOM05D006382 ORTHO05D008938 1.4e-176 623.6 474 63.7
Mapoly0179s0013 Marchantia polymorpha HOM05D006382 ORTHO05D008938 3.4e-175 619.0 451 63.4
Gohir.D11G097200 Gossypium hirsutum HOM05D006382 ORTHO05D008938 2.8e-174 615.9 427 70.3
SMO134G0292 Selaginella moellendorffii HOM05D006382 ORTHO05D008938 2.4e-173 612.8 446 63.7
Manes.05G029200 Manihot esculenta HOM05D006382 ORTHO05D008938 3.8e-171 605.5 413 72.2
Migut.B01800 Erythranthe guttata HOM05D006382 ORTHO05D008938 1.2e-167 594.0 517 58.6
CAN.G78.131 Capsicum annuum HOM05D006382 ORTHO05D008938 9.8e-167 590.9 366 76.5
TAR629G1903 Trochodendron aralioides HOM05D006382 ORTHO05D008938 2.5e-146 523.1 359 70.2
Potri.014G090601 Populus trichocarpa HOM05D006382 ORTHO05D008938 1.1e-133 481.1 324 72.2
Oeu063676.1 Olea europaea HOM05D006382 ORTHO05D008938 3.2e-133 479.6 484 54.3
Cre03.g193700 Chlamydomonas reinhardtii HOM05D006382 ORTHO05D008938 4.4e-127 459.1 452 50.7
MCO14G065 Micromonas commoda HOM05D006382 ORTHO05D008938 3.8e-118 429.5 475 48.6
Zm00001eb375690 Zea mays HOM05D006382 ORTHO05D008938 1.1e-112 411.4 274 70.8
PRCOL_00004635 Prasinoderma coloniale HOM05D006382 ORTHO05D008938 9.3e-101 371.7 490 42.9
Cfa025852 Carpinus fangiana HOM05D006382 ORTHO05D008938 3.2e-85 320.1 446 40.8
Os06g0163600 Oryza sativa ssp. japonica HOM05D006382 ORTHO05D008938 4.0e-43 180.3 100 82.0
SMO139G0016 Selaginella moellendorffii HOM05D006382 ORTHO05D376983 5.9e-39 166.4 226 40.3
Hma1.2p1_0036F.1_g022810 Hydrangea macrophylla HOM05D006382 ORTHO05D228417 8.3e-33 146.0 96 71.9
Hma1.2p1_0036F.1_g022815 Hydrangea macrophylla HOM05D006382 ORTHO05D228242 8.3e-33 146.0 96 71.9
Hma1.2p1_0515F.1_g170355 Hydrangea macrophylla HOM05D006382 ORTHO05D228454 8.3e-33 146.0 96 71.9
Hma1.2p1_1019F.1_g248455 Hydrangea macrophylla HOM05D006382 ORTHO05D228422 8.3e-33 146.0 96 71.9
SMO165G0168 Selaginella moellendorffii HOM05D006382 ORTHO05D374182 3.1e-27 127.5 279 31.5
BolC4t24936H Brassica oleracea HOM05D006382 ORTHO05D024383 7.8e-23 112.8 78 64.1
C04p33670 Brassica napus HOM05D006382 ORTHO05D024383 2.4e-16 91.3 63 65.1
Ah.05g180150 Amaranthus hybridus HOM05D006382 ORTHO05D060446 9.9e-10 69.3 68 52.9
BcaB04g18088 Brassica carinata HOM05D006382 ORTHO05D024383 9.9e-10 69.3 43 79.1
CsaV3_3G008600 Cucumis sativus L. HOM05D006382 ORTHO05D172594 1.3e-09 68.9 40 75.0
Actinidia17930 Actinidia chinensis HOM05D006382 ORTHO05D008938 2.4e-08 64.7 41 82.9


User provided reference genes

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