Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 6.9e-125 450.7 232 100.0
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 3.2e-122 441.8 232 97.4
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 9.1e-101 370.5 234 78.2
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 4.5e-100 368.2 232 75.0
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 4.5e-100 368.2 233 75.5
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 7.7e-100 367.5 232 76.3
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 1.0e-99 367.1 232 76.3
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 1.0e-99 367.1 234 75.2
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 3.8e-99 365.2 233 75.5
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 3.8e-99 365.2 234 75.2
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 3.8e-99 365.2 234 75.2
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 1.1e-98 363.6 233 75.1
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 1.2e-97 360.1 232 73.7
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 1.6e-97 359.8 232 81.5
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 1.6e-97 359.8 232 76.3
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 1.6e-97 359.8 233 75.1
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 2.8e-97 359.0 232 74.6
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.6e-97 358.6 232 73.7
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 6.1e-97 357.8 233 75.1
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 8.0e-97 357.5 232 74.1
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 1.4e-96 356.7 233 76.4
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 1.8e-96 356.3 226 74.3
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 1.8e-96 356.3 226 74.3
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.8e-96 356.3 232 73.3
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 3.0e-96 355.5 233 74.7
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 4.0e-96 355.1 226 74.8
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 4.0e-96 355.1 233 73.4
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 5.2e-96 354.8 228 73.2
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 5.2e-96 354.8 226 73.9
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 1.5e-95 353.2 232 74.1
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 1.5e-95 353.2 233 74.2
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 3.4e-95 352.1 228 73.2
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 4.4e-95 351.7 226 73.0
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 4.4e-95 351.7 226 73.0
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 4.4e-95 351.7 235 71.5
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 4.4e-95 351.7 230 72.2
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 9.8e-95 350.5 232 72.4
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 2.2e-94 349.4 255 68.6
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.2e-94 349.4 247 69.2
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 2.8e-94 349.0 233 70.8
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 4.9e-94 348.2 226 72.6
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 8.3e-94 347.4 226 73.5
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 1.1e-93 347.1 225 72.0
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 1.1e-93 347.1 233 71.2
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.4e-93 346.7 247 68.4
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 1.8e-93 346.3 232 71.6
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 3.1e-93 345.5 232 77.6
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 3.1e-93 345.5 225 72.9
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 5.4e-93 344.7 226 71.7
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 5.4e-93 344.7 232 72.8
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 7.0e-93 344.4 230 71.3
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 9.2e-93 344.0 233 71.2
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 1.6e-92 343.2 226 74.8
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 1.6e-92 343.2 233 72.5
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 2.0e-92 342.8 233 70.0
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 4.5e-92 341.7 226 74.3
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 5.9e-92 341.3 223 72.6
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.0e-91 340.5 226 73.9
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 5.0e-91 338.2 234 69.7
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 5.0e-91 338.2 237 71.3
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 5.0e-91 338.2 233 70.8
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 2.5e-90 335.9 230 69.1
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 2.5e-90 335.9 233 69.1
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 5.6e-90 334.7 232 69.0
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 5.6e-90 334.7 233 69.1
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 7.3e-90 334.3 234 68.8
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 1.2e-89 333.6 233 67.8
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 3.6e-89 332.0 236 70.8
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 6.1e-89 331.3 226 72.1
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 6.1e-89 331.3 236 71.2
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 6.1e-89 331.3 236 71.2
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 6.1e-89 331.3 230 72.2
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 8.0e-89 330.9 235 71.5
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 8.0e-89 330.9 235 71.5
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 8.0e-89 330.9 249 69.9
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 8.0e-89 330.9 239 69.0
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 1.0e-88 330.5 232 72.0
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 3.0e-88 328.9 233 67.0
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 3.0e-88 328.9 234 67.5
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 3.0e-88 328.9 236 70.8
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 4.0e-88 328.6 230 69.6
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 5.2e-88 328.2 236 67.4
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 6.8e-88 327.8 229 69.0
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 6.8e-88 327.8 233 68.2
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 8.9e-88 327.4 234 68.4
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 8.9e-88 327.4 226 72.6
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 8.9e-88 327.4 233 69.1
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 1.2e-87 327.0 236 67.4
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 1.5e-87 326.6 233 69.5
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 2.0e-87 326.2 230 67.4
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 2.6e-87 325.9 230 67.4
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 3.4e-87 325.5 233 68.2
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 3.4e-87 325.5 226 67.3
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 4.4e-87 325.1 226 71.7
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 5.7e-87 324.7 233 68.2
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 7.5e-87 324.3 234 71.8
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 1.7e-86 323.2 233 69.5
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 2.9e-86 322.4 236 66.5
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 2.9e-86 322.4 236 66.5
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 8.3e-86 320.9 236 66.5
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 8.3e-86 320.9 233 68.7
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 1.1e-85 320.5 215 72.1
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 1.8e-85 319.7 234 66.2
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 1.8e-85 319.7 231 66.7
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 4.1e-85 318.5 233 70.8
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 9.2e-85 317.4 242 67.8
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 2.7e-84 315.8 234 68.8
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 5.9e-84 314.7 227 72.7
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 1.3e-83 313.5 213 70.9
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 2.3e-83 312.8 237 65.4
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 6.6e-83 311.2 233 64.8
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 2.5e-82 309.3 220 67.3
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 9.5e-82 307.4 233 66.1
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 2.1e-81 306.2 213 70.0
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 8.0e-81 304.3 213 66.2
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 1.1e-80 303.9 237 67.5
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 1.1e-80 303.9 227 66.1
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 5.2e-80 301.6 275 57.8
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 9.8e-79 297.4 248 65.3
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 1.4e-77 293.5 236 60.6
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 4.1e-77 292.0 213 64.3
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 3.5e-76 288.9 237 63.3
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 5.2e-72 275.0 185 71.9
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.5e-71 273.5 184 71.2
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 6.4e-70 268.1 226 61.5
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 5.4e-69 265.0 180 71.7
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 2.7e-68 262.7 232 59.1
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 2.3e-67 259.6 212 60.4
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 1.9e-66 256.5 224 62.5
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 3.4e-63 245.7 211 55.5
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 4.9e-62 241.9 159 76.7
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 1.6e-57 226.9 157 67.5
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 2.1e-57 226.5 162 69.8
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 9.0e-56 221.1 193 60.1
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 1.7e-51 206.8 190 57.9
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 2.5e-50 203.0 186 58.6
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 5.6e-50 201.8 211 48.3
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 1.3e-49 200.7 232 44.4
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 2.4e-48 196.4 120 75.8
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 6.9e-48 194.9 212 47.6
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 3.4e-47 192.6 212 47.2
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 5.8e-47 191.8 182 53.8
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 1.3e-46 190.7 145 66.9
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 2.1e-41 173.3 132 67.4
Atru.chr1.2758 Acer truncatum HOM05D004213 ORTHO05D005091 9.3e-37 157.9 90 80.0
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 3.9e-35 152.5 197 42.1
VMungo0331G0027 Vigna mungo HOM05D004213 ORTHO05D005091 1.3e-33 147.5 91 74.7
MD05G1056600 Malus domestica HOM05D004213 ORTHO05D005091 9.0e-32 141.4 158 50.6
C04p01920 Brassica napus HOM05D004213 ORTHO05D005091 1.5e-31 140.6 141 51.1
EL10Ac6g15290 Beta vulgaris HOM05D004213 ORTHO05D012437 1.2e-28 131.0 99 61.6
SHI13371 Sapria himalayana HOM05D004213 ORTHO05D005091 7.4e-26 121.7 104 60.6
MBI16_g18199_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 1.1e-24 117.9 96 65.6
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 6.9e-24 115.2 208 36.1
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 5.9e-23 112.1 73 74.0
FAN06G3959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.1e-21 107.8 74 70.3
BcaC02g12495 Brassica carinata HOM05D004213 ORTHO05D005091 1.9e-21 107.1 90 57.8
PGSC0003DMG402011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 1.9e-21 107.1 67 76.1
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.2e-21 106.3 73 71.2
FAN01G2862 Fragaria x ananassa HOM05D004213 ORTHO05D005091 4.2e-21 105.9 74 68.9
MCO04G325 Micromonas commoda HOM05D004213 ORTHO05D005091 3.0e-19 99.8 203 30.0
Aa31LG5G23500 Aethionema arabicum HOM05D004213 ORTHO05D005091 1.1e-18 97.8 70 70.0
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 3.3e-18 96.3 74 63.5
FAN03G3471 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.0e-15 87.0 59 72.9
SMO308G0077 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 3.4e-15 86.3 82 48.8
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 4.7e-12 75.9 52 73.1
Cre03.g193550 Chlamydomonas reinhardtii HOM05D004213 ORTHO05D005091 7.9e-12 75.1 217 27.6
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 2.6e-10 70.1 53 73.6
RcHm_v2.0_Chr1g0366151 Rosa chinensis HOM05D004213 ORTHO05D005091 2.2e-09 67.0 46 67.4
PGSC0003DMG401011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 1.5e-07 60.8 53 58.5
Rhsim07G0218600 Rhododendron simsii HOM05D004213 ORTHO05D339259 5.9e-07 58.9 37 67.6
Ah.13g065600 Amaranthus hybridus HOM05D000001 ORTHO05D010162 2.9e-06 56.6 45 64.4


User provided reference genes

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