Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003860 Carpinus fangiana HOM05D005133 ORTHO05D006685 4.5e-192 674.5 354 100.0
Haze_15576 Corylus avellana HOM05D005133 ORTHO05D006685 8.3e-162 573.9 355 87.9
Cfa007878 Carpinus fangiana HOM05D005133 ORTHO05D006685 3.0e-159 565.5 354 86.7
Haze_14198 Corylus avellana HOM05D005133 ORTHO05D006685 8.0e-157 557.4 354 85.6
Haze_15581 Corylus avellana HOM05D005133 ORTHO05D006685 1.5e-155 553.1 353 86.4
CiPaw.02G036200 Carya illinoinensis HOM05D005133 ORTHO05D006685 8.4e-138 494.2 354 77.4
Dinv43872 Davidia involucrata HOM05D005133 ORTHO05D006685 4.6e-128 461.8 354 71.2
QL07p038619 Quercus lobata HOM05D005133 ORTHO05D006685 1.5e-126 456.8 353 72.0
Atru.chr5.593 Acer truncatum HOM05D005133 ORTHO05D006685 3.8e-122 442.2 353 69.1
Dinv32531 Davidia involucrata HOM05D005133 ORTHO05D006685 8.4e-122 441.0 354 69.2
Actinidia20170 Actinidia chinensis HOM05D005133 ORTHO05D006685 4.2e-121 438.7 354 68.4
GSVIVG01027010001 Vitis vinifera HOM05D005133 ORTHO05D006685 4.2e-121 438.7 354 69.8
CSS0009332 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 7.1e-121 438.0 353 68.8
Cpa.g.sc11.53 Carica papaya HOM05D005133 ORTHO05D006685 3.0e-119 432.6 352 69.3
Duzib133G0222 Durio zibethinus HOM05D005133 ORTHO05D006685 5.1e-119 431.8 353 68.6
COL.COLO4_06373 Corchorus olitorius HOM05D005133 ORTHO05D006685 1.5e-118 430.3 335 70.7
Thecc.01G351000 Theobroma cacao HOM05D005133 ORTHO05D006685 2.5e-118 429.5 338 71.3
Prupe.2G179100 Prunus persica HOM05D005133 ORTHO05D006685 7.4e-118 427.9 354 67.2
Lj7C506T5 Lonicera japonica HOM05D005133 ORTHO05D006685 1.6e-117 426.8 354 67.8
Peaxi162Scf00020g01713 Petunia axillaris HOM05D005133 ORTHO05D006685 2.1e-117 426.4 354 67.5
Gohir.D07G145800 Gossypium hirsutum HOM05D005133 ORTHO05D006685 3.7e-117 425.6 354 67.5
Gorai.001G158000 Gossypium raimondii HOM05D005133 ORTHO05D006685 3.7e-117 425.6 354 67.5
CSS0040148 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 4.0e-116 422.2 353 66.3
RcHm_v2.0_Chr1g0358181 Rosa chinensis HOM05D005133 ORTHO05D006685 2.6e-115 419.5 354 66.1
CSS0000155 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 7.6e-115 417.9 342 68.4
Ciclev10020434m.g Citrus clementina HOM05D005133 ORTHO05D006685 7.6e-115 417.9 357 65.3
Psat7g208960 Pisum sativum HOM05D005133 ORTHO05D006685 7.6e-115 417.9 354 65.5
FAN10G2939 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.3e-114 417.2 355 66.5
TAR375G0148 Trochodendron aralioides HOM05D005133 ORTHO05D006685 3.8e-114 415.6 354 64.4
FAN06G1776 Fragaria x ananassa HOM05D005133 ORTHO05D006685 4.9e-114 415.2 354 65.5
FAN10G2725 Fragaria x ananassa HOM05D005133 ORTHO05D006685 4.9e-114 415.2 355 66.2
SalBow1G3823 Salvia bowleyana HOM05D005133 ORTHO05D006685 1.1e-113 414.1 354 62.7
FvH4_7g15540 Fragaria vesca HOM05D005133 ORTHO05D006685 1.9e-113 413.3 354 64.7
MD07G1130200 Malus domestica HOM05D005133 ORTHO05D006685 5.5e-113 411.8 354 66.1
Rhsim07G0009300 Rhododendron simsii HOM05D005133 ORTHO05D006685 7.1e-113 411.4 352 64.8
Glyma.12G050200 Glycine max HOM05D005133 ORTHO05D006685 9.3e-113 411.0 354 65.5
TPR.G34211 Trifolium pratense HOM05D005133 ORTHO05D006685 9.3e-113 411.0 357 65.0
Manes.01G251600 Manihot esculenta HOM05D005133 ORTHO05D006685 1.2e-112 410.6 353 66.0
arahy.Tifrunner.gnm1.ann1.ZNWN3Y Arachis hypogaea HOM05D005133 ORTHO05D006685 1.6e-112 410.2 358 64.8
arahy.Tifrunner.gnm1.ann1.YZ0HQS Arachis hypogaea HOM05D005133 ORTHO05D006685 3.5e-112 409.1 358 64.5
Nitab4.5_0003501g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 4.6e-112 408.7 356 65.7
Solyc01g095230.4 Solanum lycopersicum HOM05D005133 ORTHO05D006685 1.0e-111 407.5 355 65.4
Ca_20805_v3 Cicer arietinum L. HOM05D005133 ORTHO05D006685 1.8e-111 406.8 354 63.3
Potri.014G091400 Populus trichocarpa HOM05D005133 ORTHO05D006685 3.9e-111 405.6 354 65.5
SalBow3G2243 Salvia bowleyana HOM05D005133 ORTHO05D006685 5.1e-111 405.2 377 60.2
arahy.Tifrunner.gnm1.ann1.JRPH7J Arachis hypogaea HOM05D005133 ORTHO05D006685 6.7e-111 404.8 358 63.7
LjContig00310g0005517 Lotus japonicus HOM05D005133 ORTHO05D006685 6.7e-111 404.8 355 64.8
MSTRG.20869 Avicennia marina HOM05D005133 ORTHO05D006685 1.9e-110 403.3 354 63.0
Lalb_Chr19g0138411 Lupinus albus HOM05D005133 ORTHO05D006685 5.6e-110 401.7 354 64.1
DCAR_025229 Daucus carota HOM05D005133 ORTHO05D006685 9.6e-110 401.0 352 65.1
FAN06G1340 Fragaria x ananassa HOM05D005133 ORTHO05D006685 9.6e-110 401.0 364 62.9
Phvul.011G052300 Phaseolus vulgaris HOM05D005133 ORTHO05D006685 4.8e-109 398.7 355 63.9
PGR031G0061 Punica granatum HOM05D005133 ORTHO05D006685 6.2e-109 398.3 354 65.3
Sopen01g039020 Solanum pennellii HOM05D005133 ORTHO05D006685 1.8e-108 396.7 332 67.5
PGSC0003DMG401000198 Solanum tuberosum HOM05D005133 ORTHO05D006685 1.8e-108 396.7 332 67.5
Cc06_g17440 Coffea canephora HOM05D005133 ORTHO05D006685 2.4e-108 396.4 354 61.0
Aqoxy3G00498 Aquilegia oxysepala HOM05D005133 ORTHO05D006685 5.3e-108 395.2 332 66.9
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.2e-107 394.0 360 62.2
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 5.8e-107 391.7 355 62.0
VMungo1127G1104 Vigna mungo HOM05D005133 ORTHO05D006685 1.3e-106 390.6 354 62.4
Migut.B01808 Erythranthe guttata HOM05D005133 ORTHO05D006685 8.4e-106 387.9 357 61.6
Nn7g37315 Nelumbo nucifera HOM05D005133 ORTHO05D006685 1.4e-105 387.1 356 60.7
ClCG05G014200 Citrullus lanatus HOM05D005133 ORTHO05D006685 4.2e-105 385.6 355 62.0
HanXRQChr17g0562291 Helianthus annuus HOM05D005133 ORTHO05D006685 5.5e-105 385.2 353 60.6
Sed0023612 Sechium edule HOM05D005133 ORTHO05D006685 1.2e-104 384.0 355 62.0
CsaV3_3G008530 Cucumis sativus L. HOM05D005133 ORTHO05D006685 6.0e-104 381.7 354 62.1
Medtr4g068010 Medicago truncatula HOM05D005133 ORTHO05D006685 6.0e-104 381.7 353 61.2
MELO3C006074.2 Cucumis melo HOM05D005133 ORTHO05D006685 1.3e-103 380.6 370 61.1
Sabra14G0066300 Salix brachista HOM05D005133 ORTHO05D006685 1.8e-103 380.2 393 58.8
Oeu015214.1 Olea europaea HOM05D005133 ORTHO05D006685 2.2e-101 373.2 452 50.0
vmacro20884 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 6.3e-101 371.7 379 58.3
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 1.8e-100 370.2 353 57.5
PSO135G0656 Papaver somniferum HOM05D005133 ORTHO05D006685 9.0e-100 367.9 328 61.3
Nitab4.5_0000915g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 7.6e-99 364.8 328 64.3
CANSAT01G0674 Cannabis sativa HOM05D005133 ORTHO05D006685 2.2e-98 363.2 327 66.1
TWI34G1432 Tripterygium wilfordii HOM05D005133 ORTHO05D006685 2.2e-98 363.2 358 59.5
ECA234G4221 Erigeron canadensis HOM05D005133 ORTHO05D006685 6.5e-98 361.7 355 58.3
ATR0626G352 Amborella trichopoda HOM05D005133 ORTHO05D006685 2.7e-96 356.3 333 61.3
unitig_0.g335 Utricularia gibba HOM05D005133 ORTHO05D006685 1.4e-95 354.0 352 57.4
EL10Ac1g00344 Beta vulgaris HOM05D005133 ORTHO05D006685 9.7e-94 347.8 358 56.4
Gohir.A07G140500 Gossypium hirsutum HOM05D005133 ORTHO05D006685 3.7e-93 345.9 315 64.4
Sc01g0003150 Simmondsia chinensis HOM05D005133 ORTHO05D006685 6.9e-92 341.7 354 58.2
CAN.G78.137 Capsicum annuum HOM05D005133 ORTHO05D006685 5.0e-90 335.5 355 56.3
AUR62022626 Chenopodium quinoa HOM05D005133 ORTHO05D006685 5.0e-90 335.5 323 61.3
Lsat_1_v5_gn_4_34900 Lactuca sativa HOM05D005133 ORTHO05D006685 6.5e-90 335.1 352 55.4
vmacro13220 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 4.2e-89 332.4 326 60.1
AUR62004420 Chenopodium quinoa HOM05D005133 ORTHO05D006685 2.7e-88 329.7 333 59.2
Eucgr.J01063 Eucalyptus grandis HOM05D005133 ORTHO05D006685 3.0e-87 326.2 346 54.6
THA.LOC104817324 Tarenaya hassleriana HOM05D005133 ORTHO05D006685 1.5e-86 323.9 350 55.4
Hund27238 Selenicereus undatus HOM05D005133 ORTHO05D006685 1.3e-85 320.9 364 56.3
Zm00001eb339090 Zea mays HOM05D005133 ORTHO05D006685 4.8e-85 318.9 331 55.0
Os01g0226500 Oryza sativa ssp. japonica HOM05D005133 ORTHO05D006685 6.3e-85 318.5 346 52.6
A05p01630 Brassica napus HOM05D005133 ORTHO05D006685 2.6e-83 313.2 350 51.4
Aa31LG1G27580 Aethionema arabicum HOM05D005133 ORTHO05D006685 4.5e-83 312.4 351 53.3
RcHm_v2.0_Chr1g0358091 Rosa chinensis HOM05D005133 ORTHO05D006685 1.7e-82 310.5 293 62.8
BraA05t19159Z Brassica rapa HOM05D005133 ORTHO05D006685 3.8e-82 309.3 350 50.6
AL4G45460 Arabidopsis lyrata HOM05D005133 ORTHO05D006685 5.0e-82 308.9 351 53.0
BcaC02g12707 Brassica carinata HOM05D005133 ORTHO05D006685 6.5e-82 308.5 352 52.3
RcHm_v2.0_Chr1g0357891 Rosa chinensis HOM05D005133 ORTHO05D006685 3.2e-81 306.2 307 60.3
Thhalv10001493m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 5.5e-81 305.4 353 53.0
C04p01840 Brassica napus HOM05D005133 ORTHO05D006685 1.2e-80 304.3 350 52.3
BcaC02g12500 Brassica carinata HOM05D005133 ORTHO05D006685 4.7e-80 302.4 350 52.0
Sp5g32810 Schrenkiella parvula HOM05D005133 ORTHO05D006685 1.4e-79 300.8 351 51.9
MBI16_g41624_MAGBIO Magnolia biondii HOM05D005133 ORTHO05D006685 4.4e-78 295.8 310 57.4
CARHR141470 Cardamine hirsuta HOM05D005133 ORTHO05D006685 4.5e-75 285.8 325 52.3
Thhalv10028732m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 1.3e-74 284.3 322 51.6
Carub.0004s2888 Capsella rubella HOM05D005133 ORTHO05D006685 2.2e-74 283.5 349 49.0
vmacro22850 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 3.2e-73 279.6 350 50.9
RcHm_v2.0_Chr1g0358051 Rosa chinensis HOM05D005133 ORTHO05D006685 1.7e-66 257.3 362 47.2
Pp3c4_26280 Physcomitrium patens HOM05D005133 ORTHO05D006685 8.3e-61 238.4 316 47.5
AT2G46200 Arabidopsis thaliana HOM05D005133 ORTHO05D006685 4.1e-60 236.1 314 49.0
PSO478G1127 Papaver somniferum HOM05D005133 ORTHO05D006685 2.3e-58 230.3 269 53.5
HPP92_023966 Vanilla planifolia HOM05D005133 ORTHO05D006685 2.5e-57 226.9 252 56.3
Ah.05g180080 Amaranthus hybridus HOM05D005133 ORTHO05D006685 4.7e-56 222.6 356 44.4
CDE09G0708 Ceratophyllum demersum HOM05D005133 ORTHO05D006685 6.1e-56 222.2 322 46.9
Mapoly0001s0322 Marchantia polymorpha HOM05D005133 ORTHO05D006685 1.8e-52 210.7 328 42.7
PSO384G2230 Papaver somniferum HOM05D005133 ORTHO05D006685 8.3e-45 185.3 164 62.8
arahy.Tifrunner.gnm1.ann1.Z00T6Z Arachis hypogaea HOM05D005133 ORTHO05D006685 2.7e-43 180.3 165 61.8
AagrBONN_evm.TU.Sc2ySwM_344.4499 Anthoceros agrestis HOM05D005133 ORTHO05D006685 6.6e-42 175.6 326 39.3
FAN03G0151 Fragaria x ananassa HOM05D005133 ORTHO05D006685 2.8e-32 143.7 104 65.4
Zm00001eb201120 Zea mays HOM05D005133 ORTHO05D006685 3.1e-31 140.2 153 52.3
Zm00001eb407270 Zea mays HOM05D005133 ORTHO05D006685 3.1e-31 140.2 153 52.3
SMO239G0112 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 3.5e-27 126.7 277 35.7
CBR_g45167 Chara braunii HOM05D005133 ORTHO05D006685 5.6e-25 119.4 291 33.7
SHI13349 Sapria himalayana HOM05D005133 ORTHO05D006685 3.6e-24 116.7 140 49.3
HanXRQChr04g0107751 Helianthus annuus HOM05D005133 ORTHO05D006685 2.9e-21 107.1 96 71.9
Rhsim01G0168000 Rhododendron simsii HOM05D005133 ORTHO05D006685 3.8e-21 106.7 71 84.5
vmacro01745 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 6.6e-18 95.9 139 46.8
Gohir.A03G093200 Gossypium hirsutum HOM05D005133 ORTHO05D006685 4.3e-17 93.2 109 53.2
Glyma.11G125567 Glycine max HOM05D005133 ORTHO05D006685 2.4e-15 87.4 73 64.4
SMO117G0103 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 1.3e-13 81.6 180 39.4
FvH4_2g33570 Fragaria vesca HOM05D000073 ORTHO05D015767 8.4e-13 79.0 89 55.1
C04p01870 Brassica napus HOM05D005133 ORTHO05D006685 2.1e-11 74.3 40 72.5
AUR62025074 Chenopodium quinoa HOM05D005133 ORTHO05D006685 2.7e-11 73.9 65 63.1
SMO114G0022 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 2.7e-11 73.9 105 44.8
Rhsim01G0167900 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.3e-08 65.1 51 72.5
MELO3C030134.2 Cucumis melo HOM05D005133 ORTHO05D006685 1.5e-06 58.2 60 56.7
MELO3C033909.2 Cucumis melo HOM05D005133 ORTHO05D020525 3.4e-06 57.0 82 47.6


User provided reference genes

Program Settings