Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003851 Carpinus fangiana HOM05D006269 ORTHO05D001487 0.0e+00 2538.8 1313 100.0
Haze_15599 Corylus avellana HOM05D006269 ORTHO05D001487 0.0e+00 2234.1 1295 90.7
QL04p034904 Quercus lobata HOM05D006269 ORTHO05D001487 4.3e-264 915.6 1277 47.9
Prupe.2G181700 Prunus persica HOM05D006269 ORTHO05D001487 7.0e-190 669.1 1308 40.3
Potri.002G166300 Populus trichocarpa HOM05D006269 ORTHO05D001487 7.3e-163 579.3 1254 36.4
FAN10G2074 Fragaria x ananassa HOM05D006269 ORTHO05D001487 7.6e-160 569.3 1268 37.0
FAN10G3724 Fragaria x ananassa HOM05D006269 ORTHO05D001487 7.8e-157 559.3 1269 36.6
FAN06G2203 Fragaria x ananassa HOM05D006269 ORTHO05D001487 3.9e-156 557.0 1292 37.2
FAN06G3724 Fragaria x ananassa HOM05D006269 ORTHO05D001487 3.9e-156 557.0 1281 37.1
COL.COLO4_06360 Corchorus olitorius HOM05D006269 ORTHO05D001487 2.0e-152 544.7 1221 35.5
FAN03G1935 Fragaria x ananassa HOM05D006269 ORTHO05D001487 7.6e-152 542.7 1272 36.2
Manes.01G250800 Manihot esculenta HOM05D006269 ORTHO05D001487 1.6e-149 535.0 1312 34.9
FvH4_7g15690 Fragaria vesca HOM05D006269 ORTHO05D001487 6.0e-149 533.1 1276 36.4
RcHm_v2.0_Chr1g0358421 Rosa chinensis HOM05D006269 ORTHO05D001487 7.9e-149 532.7 1338 35.9
vmacro13212 Vaccinium macrocarpon HOM05D006269 ORTHO05D001487 1.3e-148 531.9 1277 35.9
Sabra02G0145300 Salix brachista HOM05D006269 ORTHO05D001487 1.4e-145 521.9 1302 33.2
Thecc.01G349600 Theobroma cacao HOM05D006269 ORTHO05D001487 4.6e-141 506.9 962 37.7
Phvul.010G107400 Phaseolus vulgaris HOM05D006269 ORTHO05D001487 1.5e-139 501.9 1240 33.7
Glyma.07G061500 Glycine max HOM05D006269 ORTHO05D001487 4.0e-137 493.8 1258 33.9
Glyma.16G030000 Glycine max HOM05D006269 ORTHO05D001487 1.4e-134 485.3 1260 33.4
MD01G1073600 Malus domestica HOM05D006269 ORTHO05D001487 7.9e-133 479.6 1339 34.2
Rhsim10G0141000 Rhododendron simsii HOM05D006269 ORTHO05D001487 1.1e-131 475.7 1263 33.9
VMungo0331G1091 Vigna mungo HOM05D006269 ORTHO05D001487 2.9e-127 461.1 1222 33.1
Lj3g0001651 Lotus japonicus HOM05D006269 ORTHO05D001487 2.5e-126 458.0 1255 34.0
Actinidia20177 Actinidia chinensis HOM05D006269 ORTHO05D001487 4.6e-125 453.8 1246 34.4
Ciclev10018596m.g Citrus clementina HOM05D006269 ORTHO05D001487 2.3e-124 451.4 1236 34.3
TAR374G0506 Trochodendron aralioides HOM05D006269 ORTHO05D001487 3.0e-124 451.1 1242 33.2
Lalb_Chr10g0096511 Lupinus albus HOM05D006269 ORTHO05D001487 9.7e-123 446.0 1256 32.6
Sc01g0003100 Simmondsia chinensis HOM05D006269 ORTHO05D001487 2.2e-122 444.9 1243 32.5
Gohir.D08G148200 Gossypium hirsutum HOM05D006269 ORTHO05D001487 1.3e-119 435.6 1261 31.7
Gorai.004G153900 Gossypium raimondii HOM05D006269 ORTHO05D001487 3.8e-119 434.1 1257 32.1
CANSAT56G0891 Cannabis sativa HOM05D006269 ORTHO05D001487 1.9e-118 431.8 1247 33.0
ClCG06G003310 Citrullus lanatus HOM05D006269 ORTHO05D001487 1.9e-118 431.8 1265 32.3
Gohir.A08G126800 Gossypium hirsutum HOM05D006269 ORTHO05D001487 6.7e-116 423.3 1235 30.8
Peaxi162Scf01254g00022 Petunia axillaris HOM05D006269 ORTHO05D001487 4.4e-115 420.6 1337 31.6
CAN.G78.145 Capsicum annuum HOM05D006269 ORTHO05D001487 1.3e-114 419.1 1337 31.7
Cpa.g.sc184.9 Carica papaya HOM05D006269 ORTHO05D001487 1.7e-114 418.7 1150 33.1
MELO3C021171.2 Cucumis melo HOM05D006269 ORTHO05D001487 1.4e-113 415.6 1256 31.8
Cc02_g38780 Coffea canephora HOM05D006269 ORTHO05D001487 2.6e-112 411.4 1292 30.7
Sed0002830 Sechium edule HOM05D006269 ORTHO05D001487 2.2e-111 408.3 1261 31.7
Nitab4.5_0013021g0030 Nicotiana tabacum HOM05D006269 ORTHO05D001487 3.8e-111 407.5 1345 31.3
arahy.Tifrunner.gnm1.ann1.II6FYR Arachis hypogaea HOM05D006269 ORTHO05D001487 1.8e-108 398.7 758 38.9
PGSC0003DMG400000079 Solanum tuberosum HOM05D006269 ORTHO05D001487 2.3e-108 398.3 1300 31.0
CsaV3_6G000970 Cucumis sativus L. HOM05D006269 ORTHO05D001487 1.8e-105 388.7 1263 31.9
Medtr8g028265 Medicago truncatula HOM05D006269 ORTHO05D001487 7.2e-102 376.7 1244 30.1
TPR.G21288 Trifolium pratense HOM05D006269 ORTHO05D001487 1.8e-100 372.1 1234 29.8
arahy.Tifrunner.gnm1.ann1.YSVF0U Arachis hypogaea HOM05D006269 ORTHO05D001487 3.4e-99 367.9 1287 30.4
EL10Ac1g00334 Beta vulgaris HOM05D006269 ORTHO05D001487 1.9e-94 352.1 1296 29.0
Ca_23548_v3 Cicer arietinum L. HOM05D006269 ORTHO05D001487 1.2e-93 349.4 1227 29.7
AUR62004430 Chenopodium quinoa HOM05D006269 ORTHO05D001487 4.0e-92 344.4 1355 29.5
Eucgr.D02334 Eucalyptus grandis HOM05D006269 ORTHO05D001487 5.7e-91 340.5 711 37.7
AUR62022637 Chenopodium quinoa HOM05D006269 ORTHO05D001487 4.9e-90 337.4 1355 29.1
Oeu008674.2 Olea europaea HOM05D006269 ORTHO05D001487 6.3e-90 337.0 1285 28.9
Psat4g157480 Pisum sativum HOM05D006269 ORTHO05D001487 3.5e-88 331.3 1225 29.0
Hund27233 Selenicereus undatus HOM05D006269 ORTHO05D001487 3.5e-88 331.3 1314 29.4
PGR031G2857 Punica granatum HOM05D006269 ORTHO05D001487 3.6e-85 321.2 1239 28.7
Phvul.010G106600 Phaseolus vulgaris HOM05D006269 ORTHO05D001487 4.7e-85 320.9 446 42.2
Ah.05g180020 Amaranthus hybridus HOM05D006269 ORTHO05D001487 8.0e-85 320.1 1334 28.1
SalBow5G2113 Salvia bowleyana HOM05D006269 ORTHO05D001487 6.8e-84 317.0 1199 29.0
Sopen01g039110 Solanum pennellii HOM05D006269 ORTHO05D001487 2.7e-80 305.1 1294 28.7
Aqoxy1G02938 Aquilegia oxysepala HOM05D006269 ORTHO05D001487 1.7e-74 285.8 1216 29.3
Aa31LG1G27630 Aethionema arabicum HOM05D006269 ORTHO05D001487 2.2e-74 285.4 1252 27.2
Solyc01g095320.4 Solanum lycopersicum HOM05D006269 ORTHO05D001487 4.1e-73 281.2 1160 30.3
A05p01560 Brassica napus HOM05D006269 ORTHO05D001487 1.8e-68 265.8 1201 29.6
GSVIVG01027028001 Vitis vinifera HOM05D006269 ORTHO05D001487 2.6e-67 261.9 1027 29.9
Migut.N01576 Erythranthe guttata HOM05D006269 ORTHO05D001487 4.4e-67 261.2 1207 28.1
BcaC02g12701 Brassica carinata HOM05D006269 ORTHO05D001487 5.8e-67 260.8 1174 27.9
C04p01780 Brassica napus HOM05D006269 ORTHO05D001487 2.1e-64 252.3 1245 27.4
BcaC02g12510 Brassica carinata HOM05D006269 ORTHO05D001487 6.6e-63 247.3 1245 27.6
SGA_v2.0_scaffold11G05704 Striga asiatica HOM05D006269 ORTHO05D001487 1.5e-62 246.1 1220 28.3
Thhalv10001302m.g Eutrema salsugineum HOM05D006269 ORTHO05D001487 4.3e-62 244.6 1227 26.3
MBI06_g04303_MAGBIO Magnolia biondii HOM05D006269 ORTHO05D001487 4.3e-62 244.6 562 33.8
DCAR_008644 Daucus carota HOM05D001461 ORTHO05D001487 1.1e-60 240.0 816 30.3
BraA05t19151Z Brassica rapa HOM05D006269 ORTHO05D001487 1.2e-59 236.5 1232 28.0
Actinidia10090 Actinidia chinensis HOM05D006269 ORTHO05D001487 2.2e-58 232.3 916 31.4
Nitab4.5_0000305g0340 Nicotiana tabacum HOM05D006269 ORTHO05D001487 1.1e-57 229.9 418 37.1
AL4G45510 Arabidopsis lyrata HOM05D006269 ORTHO05D001487 4.1e-57 228.0 1304 24.7
Lsat_1_v5_gn_3_138421 Lactuca sativa HOM05D006269 ORTHO05D001487 2.7e-56 225.3 1201 26.6
Sp4g28290 Schrenkiella parvula HOM05D006269 ORTHO05D001487 3.9e-55 221.5 724 30.0
Carub.0004s2894 Capsella rubella HOM05D006269 ORTHO05D001487 4.7e-53 214.5 1290 26.1
Zm00001eb237960 Zea mays HOM05D006269 ORTHO05D001487 4.0e-52 211.5 748 31.7
AT2G46240 Arabidopsis thaliana HOM05D006269 ORTHO05D001487 3.8e-50 204.9 1305 25.0
HPP92_008793 Vanilla planifolia HOM05D006269 ORTHO05D001487 3.0e-39 168.7 754 27.3
MBI06_g04302_MAGBIO Magnolia biondii HOM05D006269 ORTHO05D001487 6.2e-37 161.0 821 29.1
Glyma.18G186200 Glycine max HOM05D006269 ORTHO05D001487 3.0e-31 142.1 689 28.7
Nitab4.5_0000305g0330 Nicotiana tabacum HOM05D006269 ORTHO05D001487 2.9e-26 125.6 852 26.1
HanXRQChr06g0166911 Helianthus annuus HOM05D006269 ORTHO05D001487 1.4e-25 123.2 763 26.9
Os02g0259850 Oryza sativa ssp. japonica HOM05D006269 ORTHO05D001487 1.9e-25 122.9 285 33.3
ECA240G2267 Erigeron canadensis HOM05D001977 ORTHO05D002246 1.5e-22 113.2 370 33.5
SEGI_35486 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 1.6e-21 109.8 932 26.1
Zm00001eb380100 Zea mays HOM05D006269 ORTHO05D001487 2.9e-18 99.0 197 39.6
Zm00001eb403850 Zea mays HOM05D006269 ORTHO05D001487 2.9e-18 99.0 197 39.6
Zm00001eb364900 Zea mays HOM05D006269 ORTHO05D001487 8.4e-18 97.4 197 40.1
Zm00001eb095310 Zea mays HOM05D006269 ORTHO05D001487 9.3e-17 94.0 391 31.5
SEGI_27071 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 3.5e-16 92.0 823 24.4
Zm00001eb380120 Zea mays HOM05D006269 ORTHO05D001487 7.9e-16 90.9 254 31.9
ATR1093G003 Amborella trichopoda HOM05D006269 ORTHO05D001487 8.7e-15 87.4 442 29.6
Mapoly0035s0113 Marchantia polymorpha HOM05D006269 ORTHO05D001487 9.7e-14 84.0 127 40.2
Oeu004921.1 Olea europaea HOM05D006269 ORTHO05D001487 2.2e-13 82.8 125 47.2
Pp3c26_10790 Physcomitrium patens HOM05D006269 ORTHO05D001487 2.8e-13 82.4 156 37.8
Duzib133G1471 Durio zibethinus HOM05D006269 ORTHO05D001487 1.2e-11 77.0 74 59.5
Mapoly0045s0108 Marchantia polymorpha HOM05D006269 ORTHO05D001487 1.5e-11 76.6 105 42.9
SEGI_19997 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 7.7e-11 74.3 160 36.9
SEGI_37331 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 2.2e-10 72.8 142 32.4
SEGI_30715 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 2.9e-10 72.4 189 29.6
SEGI_15116 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 3.8e-10 72.0 113 40.7
SEGI_38563 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 3.8e-10 72.0 134 38.1
SEGI_19331 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 1.4e-09 70.1 233 31.3
HanXRQChr14g0451041 Helianthus annuus HOM05D002685 ORTHO05D001487 1.9e-09 69.7 103 35.9
SEGI_05188 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 2.5e-09 69.3 109 36.7
AagrBONN_evm.TU.Sc2ySwM_368.336 Anthoceros agrestis HOM05D006269 ORTHO05D001487 3.2e-09 68.9 590 23.1
FvH4_4g23260 Fragaria vesca HOM05D002685 ORTHO05D001487 3.2e-09 68.9 153 32.0
FAN12G0439 Fragaria x ananassa HOM05D002685 ORTHO05D001487 3.2e-09 68.9 153 32.0
FAN17G2673 Fragaria x ananassa HOM05D002685 ORTHO05D001487 3.2e-09 68.9 153 30.7
Pp3c7_10910 Physcomitrium patens HOM05D002157 ORTHO05D002197 4.2e-09 68.6 101 43.6
Pp3c19_7760 Physcomitrium patens HOM05D006269 ORTHO05D001487 7.2e-09 67.8 132 38.6
Phvul.010G106500 Phaseolus vulgaris HOM05D006269 ORTHO05D001487 1.2e-08 67.0 120 40.0
AagrBONN_evm.TU.Sc2ySwM_228.5492 Anthoceros agrestis HOM05D006269 ORTHO05D001487 2.1e-08 66.2 150 34.0
AL1G23310 Arabidopsis lyrata HOM05D002685 ORTHO05D001487 2.1e-08 66.2 101 40.6
Nitab4.5_0003251g0040 Nicotiana tabacum HOM05D002685 ORTHO05D001487 2.1e-08 66.2 132 31.1
Pp3c13_3400 Physcomitrium patens HOM05D006269 ORTHO05D001487 2.1e-08 66.2 628 23.6
RcHm_v2.0_Chr4g0429621 Rosa chinensis HOM05D002685 ORTHO05D001487 3.6e-08 65.5 144 32.6
AT1G12060 Arabidopsis thaliana HOM05D002685 ORTHO05D001487 6.1e-08 64.7 101 38.6
Sp1g10730 Schrenkiella parvula HOM05D002685 ORTHO05D001487 6.1e-08 64.7 104 40.4
Atru.chr11.2379 Acer truncatum HOM05D002685 ORTHO05D001487 7.9e-08 64.3 195 27.7
ECA234G0665 Erigeron canadensis HOM05D002685 ORTHO05D001487 7.9e-08 64.3 101 37.6
Thecc.06G232900 Theobroma cacao HOM05D002685 ORTHO05D001487 7.9e-08 64.3 106 38.7
Aqoxy3G01654 Aquilegia oxysepala HOM05D002685 ORTHO05D001487 1.0e-07 63.9 166 31.9
Gohir.A03G150100 Gossypium hirsutum HOM05D002685 ORTHO05D001487 1.0e-07 63.9 211 28.0
Gorai.005G194700 Gossypium raimondii HOM05D002685 ORTHO05D001487 1.0e-07 63.9 223 26.9
CARHR012420 Cardamine hirsuta HOM05D002685 ORTHO05D001487 1.4e-07 63.5 101 38.6
Nitab4.5_0004556g0030 Nicotiana tabacum HOM05D002685 ORTHO05D001487 1.4e-07 63.5 242 26.0
THA.LOC104825581 Tarenaya hassleriana HOM05D002685 ORTHO05D001487 1.4e-07 63.5 145 29.7
Carub.0001s1174 Capsella rubella HOM05D002685 ORTHO05D001487 1.8e-07 63.2 102 38.2
Lj1C600G7 Lonicera japonica HOM05D002685 ORTHO05D001487 1.8e-07 63.2 101 37.6
Lj1C600T10 Lonicera japonica HOM05D002685 ORTHO05D001487 1.8e-07 63.2 146 28.8
DCAR_024650 Daucus carota HOM05D002685 ORTHO05D001487 2.3e-07 62.8 132 31.8
MD16G1124100 Malus domestica HOM05D002685 ORTHO05D001487 2.3e-07 62.8 108 32.4
PGSC0003DMG400010462 Solanum tuberosum HOM05D002685 ORTHO05D001487 2.3e-07 62.8 102 34.3
Duzib235G0187 Durio zibethinus HOM05D002685 ORTHO05D001487 3.0e-07 62.4 106 35.8
Thhalv10008770m.g Eutrema salsugineum HOM05D002685 ORTHO05D001487 3.0e-07 62.4 100 38.0
Peaxi162Scf00128g00166 Petunia axillaris HOM05D002685 ORTHO05D001487 3.0e-07 62.4 118 30.5
Solyc10g084170.1 Solanum lycopersicum HOM05D002685 ORTHO05D001487 3.0e-07 62.4 115 32.2
COL.COLO4_31878 Corchorus olitorius HOM05D005487 ORTHO05D007280 3.9e-07 62.0 106 35.8
MD13G1123300 Malus domestica HOM05D002685 ORTHO05D001487 3.9e-07 62.0 212 24.5
Pp3c21_6840 Physcomitrium patens HOM05D006269 ORTHO05D001487 3.9e-07 62.0 119 37.8
Lj1C600T9 Lonicera japonica HOM05D002685 ORTHO05D001487 5.1e-07 61.6 106 34.9
Potri.003G167500 Populus trichocarpa HOM05D002685 ORTHO05D001487 5.1e-07 61.6 102 36.3
Aa31LG7G9970 Aethionema arabicum HOM05D002685 ORTHO05D001487 6.7e-07 61.2 110 32.7
Nitab4.5_0003401g0080 Nicotiana tabacum HOM05D002685 ORTHO05D001487 6.7e-07 61.2 214 26.6
HanXRQChr14g0451421 Helianthus annuus HOM05D002685 ORTHO05D001487 8.8e-07 60.8 256 25.8
Pp3c19_17670 Physcomitrium patens HOM05D006269 ORTHO05D001487 8.8e-07 60.8 217 28.6
SEGI_14808 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 8.8e-07 60.8 245 29.0
PGSC0003DMG400041029 Solanum tuberosum HOM05D002685 ORTHO05D001487 8.8e-07 60.8 171 26.3
BraA08t35225Z Brassica rapa HOM05D002685 ORTHO05D001487 1.1e-06 60.5 101 36.6
Sopen06g028800 Solanum pennellii HOM05D002685 ORTHO05D001487 1.1e-06 60.5 226 27.0
TAR624G0212 Trochodendron aralioides HOM05D002685 ORTHO05D001487 1.1e-06 60.5 155 31.0
Cpa.g.sc75.118 Carica papaya HOM05D002685 ORTHO05D001487 1.5e-06 60.1 130 30.8
Oeu001318.1 Olea europaea HOM05D002685 ORTHO05D001487 1.5e-06 60.1 120 31.7
Nn8g41102 Nelumbo nucifera HOM05D002685 ORTHO05D001487 2.0e-06 59.7 102 32.4
C08p15160 Brassica napus HOM05D002685 ORTHO05D001487 2.5e-06 59.3 103 35.0
BolC8t49146H Brassica oleracea HOM05D002685 ORTHO05D001487 2.5e-06 59.3 103 35.0
Nn1g01761 Nelumbo nucifera HOM05D006269 ORTHO05D001487 2.5e-06 59.3 239 28.5
unitig_52.g17421 Utricularia gibba HOM05D002685 ORTHO05D001487 2.5e-06 59.3 179 31.3
A08p33050 Brassica napus HOM05D002685 ORTHO05D001487 3.3e-06 58.9 101 35.6
Haze_12458 Corylus avellana HOM05D002685 ORTHO05D001487 3.3e-06 58.9 111 27.0
QL03p051288 Quercus lobata HOM05D002685 ORTHO05D001487 3.3e-06 58.9 173 29.5
Sc14g0009180 Simmondsia chinensis HOM05D002685 ORTHO05D001487 3.3e-06 58.9 167 24.0
Ah.02g131020 Amaranthus hybridus HOM05D002685 ORTHO05D001487 4.3e-06 58.5 102 35.3
Solyc06g072430.3 Solanum lycopersicum HOM05D002685 ORTHO05D001487 4.3e-06 58.5 267 25.5
Actinidia08046 Actinidia chinensis HOM05D002685 ORTHO05D001487 5.7e-06 58.2 132 29.5
Gohir.A06G205701 Gossypium hirsutum HOM05D002685 ORTHO05D001487 5.7e-06 58.2 109 37.6
MD10G1331200 Malus domestica HOM05D002685 ORTHO05D001487 5.7e-06 58.2 107 33.6
BcaC07g41055 Brassica carinata HOM05D002685 ORTHO05D001487 7.4e-06 57.8 103 35.0
BcaC07g41059 Brassica carinata HOM05D002685 ORTHO05D001487 7.4e-06 57.8 103 35.0
C08p40580 Brassica napus HOM05D002685 ORTHO05D001487 7.4e-06 57.8 103 35.0
CiPaw.09G102100 Carya illinoinensis HOM05D002685 ORTHO05D001487 7.4e-06 57.8 101 34.7
PGSC0003DMG400023607 Solanum tuberosum HOM05D002685 ORTHO05D001487 7.4e-06 57.8 115 32.2
TAR629G1863 Trochodendron aralioides HOM05D002685 ORTHO05D001487 7.4e-06 57.8 102 31.4
Actinidia25109 Actinidia chinensis HOM05D002685 ORTHO05D001487 9.7e-06 57.4 120 30.8
Aa31LG1G2670 Aethionema arabicum HOM05D002685 ORTHO05D001487 9.7e-06 57.4 103 34.0
Cfa000108 Carpinus fangiana HOM05D002685 ORTHO05D001487 9.7e-06 57.4 111 36.0
Dinv07400 Davidia involucrata HOM05D002685 ORTHO05D001487 9.7e-06 57.4 101 35.6
Gorai.010G250200 Gossypium raimondii HOM05D002685 ORTHO05D001487 9.7e-06 57.4 109 37.6
Zm00001eb382930 Zea mays HOM05D006269 ORTHO05D001487 9.7e-06 57.4 181 32.6


User provided reference genes

Program Settings