Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003780 Carpinus fangiana HOM05D000026 ORTHO05D008596 2.9e-116 421.8 198 100.0
QL08p045855 Quercus lobata HOM05D000026 ORTHO05D008596 1.1e-94 350.1 198 82.8
Thecc.01G339500 Theobroma cacao HOM05D000026 ORTHO05D008596 8.6e-92 340.5 199 79.4
CANSAT56G3067 Cannabis sativa HOM05D000026 ORTHO05D008596 2.4e-89 332.4 199 78.9
FAN06G2200 Fragaria x ananassa HOM05D000026 ORTHO05D008596 6.8e-89 330.9 199 79.4
RcHm_v2.0_Chr1g0360221 Rosa chinensis HOM05D000026 ORTHO05D008596 6.8e-89 330.9 201 80.1
FvH4_7g16970 Fragaria vesca HOM05D000026 ORTHO05D008596 2.0e-88 329.3 201 79.6
FAN06G4713 Fragaria x ananassa HOM05D000026 ORTHO05D008596 2.0e-88 329.3 201 79.6
FAN10G3002 Fragaria x ananassa HOM05D000026 ORTHO05D008596 3.4e-88 328.6 201 79.1
Potri.014G100700 Populus trichocarpa HOM05D000026 ORTHO05D008596 2.2e-87 325.9 199 76.9
GSVIVG01027181001 Vitis vinifera HOM05D000026 ORTHO05D008596 4.9e-87 324.7 199 76.4
Gohir.A07G136500 Gossypium hirsutum HOM05D000026 ORTHO05D008596 8.4e-87 323.9 200 75.5
CSS0047897 Camellia sinensis var. sinensis HOM05D000026 ORTHO05D008596 1.1e-86 323.6 199 74.9
Gohir.D07G141900 Gossypium hirsutum HOM05D000026 ORTHO05D008596 5.4e-86 321.2 200 75.0
Gorai.001G153500 Gossypium raimondii HOM05D000026 ORTHO05D008596 5.4e-86 321.2 200 75.0
Potri.002G173800 Populus trichocarpa HOM05D000026 ORTHO05D008596 7.1e-86 320.9 200 74.5
Prupe.2G192000 Prunus persica HOM05D000026 ORTHO05D008596 9.3e-86 320.5 201 77.6
Lj7A496T103 Lonicera japonica HOM05D000026 ORTHO05D008596 1.2e-85 320.1 195 77.9
Atru.chr5.703 Acer truncatum HOM05D000026 ORTHO05D008596 3.5e-85 318.5 198 75.3
Lsat_1_v5_gn_4_30860 Lactuca sativa HOM05D000026 ORTHO05D008596 4.6e-85 318.2 200 73.5
MBI04_g28825_MAGBIO Magnolia biondii HOM05D000026 ORTHO05D008596 1.0e-84 317.0 197 75.1
Manes.05G020900 Manihot esculenta HOM05D000026 ORTHO05D008596 1.0e-84 317.0 199 75.4
FAN01G2684 Fragaria x ananassa HOM05D000026 ORTHO05D008596 2.3e-84 315.8 219 72.6
HanXRQChr16g0524761 Helianthus annuus HOM05D000026 ORTHO05D008596 2.3e-84 315.8 200 73.0
Cc02_g39620 Coffea canephora HOM05D000026 ORTHO05D008596 1.1e-83 313.5 197 74.1
EL10Ac1g00239 Beta vulgaris HOM05D000026 ORTHO05D008596 1.5e-83 313.2 199 72.4
Nitab4.5_0000258g0260 Nicotiana tabacum HOM05D000026 ORTHO05D008596 1.9e-83 312.8 196 71.4
TWI23G0686 Tripterygium wilfordii HOM05D000026 ORTHO05D008596 1.9e-83 312.8 200 72.0
Cpa.g.sc96.56 Carica papaya HOM05D000026 ORTHO05D008596 9.6e-83 310.5 197 74.1
MD01G1084300 Malus domestica HOM05D000026 ORTHO05D008596 1.3e-82 310.1 201 73.6
PGR031G0964 Punica granatum HOM05D000026 ORTHO05D008596 1.4e-81 306.6 197 71.1
TAR629G1880 Trochodendron aralioides HOM05D000026 ORTHO05D008596 1.8e-81 306.2 199 71.9
vmacro12664 Vaccinium macrocarpon HOM05D000026 ORTHO05D008596 3.4e-80 302.0 196 73.0
Hund27184 Selenicereus undatus HOM05D000026 ORTHO05D008596 7.6e-80 300.8 192 70.3
TWI59G0194 Tripterygium wilfordii HOM05D000026 ORTHO05D008596 9.9e-80 300.4 200 69.5
Hma1.2p1_0101F.1_g049143 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 1.3e-79 300.1 191 73.3
Hma1.2p1_2584F.1_g324880 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 1.3e-79 300.1 191 73.3
ECA234G0680 Erigeron canadensis HOM05D000026 ORTHO05D008596 1.7e-79 299.7 201 69.7
DCAR_006978 Daucus carota HOM05D000026 ORTHO05D008596 3.8e-79 298.5 197 70.1
A04p34480 Brassica napus HOM05D000026 ORTHO05D008596 1.9e-78 296.2 199 66.8
BraA04t18906Z Brassica rapa HOM05D000026 ORTHO05D008596 1.9e-78 296.2 199 66.8
arahy.Tifrunner.gnm1.ann1.HRQ3AE Arachis hypogaea HOM05D000026 ORTHO05D008596 2.4e-78 295.8 195 72.8
Aqoxy5G04296 Aquilegia oxysepala HOM05D000026 ORTHO05D008596 3.2e-78 295.4 200 70.5
Lj3g0003520 Lotus japonicus HOM05D000026 ORTHO05D008596 3.2e-78 295.4 199 71.4
Ciclev10022329m.g Citrus clementina HOM05D000026 ORTHO05D008596 4.2e-78 295.0 198 69.7
Phvul.010G115400 Phaseolus vulgaris HOM05D000026 ORTHO05D008596 5.4e-78 294.7 199 71.4
Carub.0004s2930 Capsella rubella HOM05D000026 ORTHO05D008596 7.1e-78 294.3 199 67.3
CiPaw.01G078200 Carya illinoinensis HOM05D000026 ORTHO05D008596 1.2e-77 293.5 166 78.9
Thhalv10001639m.g Eutrema salsugineum HOM05D000026 ORTHO05D008596 1.2e-77 293.5 199 67.8
VMungo0331G1134 Vigna mungo HOM05D000026 ORTHO05D008596 1.6e-77 293.1 199 71.4
AL4G46010 Arabidopsis lyrata HOM05D000026 ORTHO05D008596 3.5e-77 292.0 199 67.3
Ca_23515_v3 Cicer arietinum L. HOM05D000026 ORTHO05D008596 3.5e-77 292.0 197 70.6
arahy.Tifrunner.gnm1.ann1.CN1679 Arachis hypogaea HOM05D000026 ORTHO05D008596 4.6e-77 291.6 195 71.8
Lalb_Chr10g0100681 Lupinus albus HOM05D000026 ORTHO05D008596 4.6e-77 291.6 199 70.4
AT2G46580 Arabidopsis thaliana HOM05D000026 ORTHO05D008596 6.0e-77 291.2 199 66.3
Glyma.16G023100 Glycine max HOM05D000026 ORTHO05D008596 6.0e-77 291.2 192 74.0
MSTRG.28272 Avicennia marina HOM05D000026 ORTHO05D008596 7.9e-77 290.8 193 68.9
THA.LOC104827623 Tarenaya hassleriana HOM05D000026 ORTHO05D008596 1.3e-76 290.0 200 67.0
CARHR141930 Cardamine hirsuta HOM05D000026 ORTHO05D008596 2.3e-76 289.3 199 66.3
SGA_v2.0_scaffold232G43545 Striga asiatica HOM05D000026 ORTHO05D008596 3.9e-76 288.5 192 68.2
TPR.G20231 Trifolium pratense HOM05D000026 ORTHO05D008596 3.9e-76 288.5 197 70.6
Medtr8g027365 Medicago truncatula HOM05D000026 ORTHO05D008596 5.1e-76 288.1 199 69.8
C04p72250 Brassica napus HOM05D000026 ORTHO05D008596 1.5e-75 286.6 199 64.3
CAN.G360.5 Capsicum annuum HOM05D000026 ORTHO05D008596 1.5e-75 286.6 190 66.8
PSO063G7217 Papaver somniferum HOM05D000026 ORTHO05D008596 1.5e-75 286.6 199 67.8
COL.COLO4_06235 Corchorus olitorius HOM05D000026 ORTHO05D008596 5.6e-75 284.6 166 78.9
BcaC02g07019 Brassica carinata HOM05D000026 ORTHO05D008596 7.3e-75 284.3 199 63.8
Duzib133G0719 Durio zibethinus HOM05D000026 ORTHO05D008596 7.3e-75 284.3 166 80.1
Eucgr.D02387 Eucalyptus grandis HOM05D000026 ORTHO05D008596 7.3e-75 284.3 197 69.0
FAN10G2309 Fragaria x ananassa HOM05D000026 ORTHO05D000127 7.3e-75 284.3 169 80.5
Solyc05g050530.3 Solanum lycopersicum HOM05D000026 ORTHO05D008596 7.3e-75 284.3 185 68.1
Sopen05g028950 Solanum pennellii HOM05D000026 ORTHO05D008596 2.8e-74 282.3 181 69.1
Sp4g28630 Schrenkiella parvula HOM05D000026 ORTHO05D008596 6.2e-74 281.2 194 66.0
BcaC02g07042 Brassica carinata HOM05D000026 ORTHO05D008596 2.6e-72 275.8 195 65.1
unitig_21.g20560 Utricularia gibba HOM05D000026 ORTHO05D008596 9.9e-72 273.9 197 64.5
Migut.N01531 Erythranthe guttata HOM05D000026 ORTHO05D008596 6.4e-71 271.2 196 64.3
Nitab4.5_0003865g0100 Nicotiana tabacum HOM05D000026 ORTHO05D008596 2.4e-70 269.2 196 63.3
Os03g0115500 Oryza sativa ssp. japonica HOM05D000026 ORTHO05D008596 6.0e-69 264.6 193 62.7
AUR62004514 Chenopodium quinoa HOM05D000026 ORTHO05D008596 1.0e-68 263.8 169 70.4
CsaV3_3G007930 Cucumis sativus L. HOM05D000026 ORTHO05D008596 2.3e-68 262.7 197 60.9
Sed0016971 Sechium edule HOM05D000026 ORTHO05D008596 2.3e-68 262.7 193 62.2
Zm00001eb001050 Zea mays HOM05D000026 ORTHO05D008596 2.3e-68 262.7 196 62.2
Dinv32607 Davidia involucrata HOM05D000026 ORTHO05D008596 3.9e-68 261.9 156 76.9
MELO3C006011.2 Cucumis melo HOM05D000026 ORTHO05D008596 1.1e-67 260.4 199 60.8
SEGI_21315 Sequoiadendron giganteum HOM05D000026 ORTHO05D008596 1.5e-67 260.0 195 59.5
PGSC0003DMG400007008 Solanum tuberosum HOM05D000026 ORTHO05D008596 4.3e-67 258.5 161 70.2
Aa31LG1G27980 Aethionema arabicum HOM05D000026 ORTHO05D008596 9.6e-67 257.3 184 65.8
CDE02G1978 Ceratophyllum demersum HOM05D000026 ORTHO05D008596 2.8e-66 255.8 192 64.1
Actinidia28110 Actinidia chinensis HOM05D000026 ORTHO05D008596 9.0e-65 250.8 166 74.1
FAN03G0355 Fragaria x ananassa HOM05D000026 ORTHO05D008596 3.8e-63 245.4 164 74.4
BcaNung06661 Brassica carinata HOM05D000026 ORTHO05D008596 1.9e-62 243.0 200 59.0
PSO170G4931 Papaver somniferum HOM05D000026 ORTHO05D008596 1.8e-60 236.5 199 60.3
BolC4t28712H Brassica oleracea HOM05D000026 ORTHO05D008596 3.0e-60 235.7 221 51.6
Rhsim01G0174600 Rhododendron simsii HOM05D000026 ORTHO05D008596 1.9e-59 233.0 195 59.0
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 1.3e-55 220.3 199 51.8
Mapoly0085s0082 Marchantia polymorpha HOM05D000026 ORTHO05D008596 2.5e-54 216.1 201 51.2
Hma1.2p1_0101F.1_g049146 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 1.2e-53 213.8 133 72.2
Hma1.2p1_2584F.1_g324890 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 1.2e-53 213.8 133 72.2
Oeu004961.1 Olea europaea HOM05D000026 ORTHO05D008596 5.1e-52 208.4 132 68.9
Pp3c7_90 Physcomitrium patens HOM05D000026 ORTHO05D008596 6.7e-52 208.0 195 47.7
Sabra14G0074100 Salix brachista HOM05D000026 ORTHO05D008596 7.4e-51 204.5 173 58.4
SMO119G0236 Selaginella moellendorffii HOM05D000026 ORTHO05D008596 1.3e-50 203.8 198 50.0
Nn1g00327 Nelumbo nucifera HOM05D000026 ORTHO05D008596 2.2e-50 203.0 192 54.2
Peaxi162Scf00716g00425 Petunia axillaris HOM05D000026 ORTHO05D008596 4.8e-50 201.8 194 50.0
Sc01g0002470 Simmondsia chinensis HOM05D000026 ORTHO05D008596 2.3e-44 183.0 107 76.6
ClCG05G000710 Citrullus lanatus HOM05D000026 ORTHO05D008596 1.4e-36 157.1 273 38.1
Hma1.2p1_0101F.1_g049160 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 7.4e-35 151.4 92 73.9
Actinidia28403 Actinidia chinensis HOM05D000026 ORTHO05D008596 1.7e-34 150.2 89 77.5
CBR_g3312 Chara braunii HOM05D000026 ORTHO05D008596 1.8e-33 146.7 216 37.0
AUR62022739 Chenopodium quinoa HOM05D000026 ORTHO05D008596 3.2e-30 136.0 92 66.3
HPP92_015098 Vanilla planifolia HOM05D000026 ORTHO05D008596 4.4e-27 125.6 111 56.8
ATR0757G161 Amborella trichopoda HOM05D000026 ORTHO05D008596 5.7e-27 125.2 77 74.0
MCO05G651 Micromonas commoda HOM05D000026 ORTHO05D008596 1.0e-23 114.4 178 34.8
Sabra02G0139600 Salix brachista HOM05D000026 ORTHO05D008596 1.0e-23 114.4 70 74.3
Haze_15680 Corylus avellana HOM05D000026 ORTHO05D008596 2.2e-18 96.7 47 97.9
PRCOL_00000497 Prasinoderma coloniale HOM05D000026 ORTHO05D008596 7.0e-17 91.7 229 30.6
Cre02.g095100 Chlamydomonas reinhardtii HOM05D000026 ORTHO05D008596 3.2e-14 82.8 136 33.8
Zm00001eb244850 Zea mays HOM05D017471 ORTHO05D012887 6.1e-13 78.6 75 50.7
Hund19453 Selenicereus undatus HOM05D004066 ORTHO05D008596 4.0e-12 75.9 53 66.0
Zm00001eb123990 Zea mays HOM05D000026 ORTHO05D012887 6.8e-12 75.1 124 37.9
TAR636G3419 Trochodendron aralioides HOM05D000026 ORTHO05D008596 7.5e-11 71.6 62 58.1


User provided reference genes

Program Settings