Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003773 Carpinus fangiana HOM05D006425 ORTHO05D007312 0.0e+00 2174.4 1085 100.0
Haze_15687 Corylus avellana HOM05D006425 ORTHO05D007312 0.0e+00 2087.8 1117 94.1
QL08p046032 Quercus lobata HOM05D006425 ORTHO05D007312 0.0e+00 1835.1 1072 85.2
Atru.chr5.713 Acer truncatum HOM05D006425 ORTHO05D007312 0.0e+00 1757.7 1086 79.9
Potri.014G101400 Populus trichocarpa HOM05D006425 ORTHO05D007312 0.0e+00 1754.2 1089 79.4
Sabra14G0074600 Salix brachista HOM05D006425 ORTHO05D007312 0.0e+00 1723.4 1095 78.2
TWI23G0835 Tripterygium wilfordii HOM05D006425 ORTHO05D007312 0.0e+00 1722.6 1089 78.7
MD07G1153800 Malus domestica HOM05D006425 ORTHO05D007312 0.0e+00 1718.7 1088 78.1
Thecc.01G338700 Theobroma cacao HOM05D006425 ORTHO05D007312 0.0e+00 1708.3 1080 78.8
Duzib138G0057 Durio zibethinus HOM05D006425 ORTHO05D007312 0.0e+00 1707.6 1081 78.1
CSS0033565 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 0.0e+00 1703.3 1092 77.6
Manes.01G243600 Manihot esculenta HOM05D006425 ORTHO05D007312 0.0e+00 1703.3 1089 78.9
FvH4_7g17030 Fragaria vesca HOM05D006425 ORTHO05D007312 0.0e+00 1699.9 1083 77.9
Cpa.g.sc139.7 Carica papaya HOM05D006425 ORTHO05D007312 0.0e+00 1694.1 1094 77.8
RcHm_v2.0_Chr1g0360431 Rosa chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1688.3 1075 77.6
Eucgr.E03445 Eucalyptus grandis HOM05D006425 ORTHO05D007312 0.0e+00 1676.8 1073 77.0
TAR629G2477 Trochodendron aralioides HOM05D006425 ORTHO05D007312 0.0e+00 1669.1 1087 77.1
VMungo0540G0548 Vigna mungo HOM05D006425 ORTHO05D007312 0.0e+00 1665.6 1081 75.9
FAN10G2644 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1662.5 1069 77.4
FAN10G4300 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1661.7 1076 77.1
GSVIVG01027188001 Vitis vinifera HOM05D006425 ORTHO05D007312 0.0e+00 1661.4 1086 76.2
Sed0010112 Sechium edule HOM05D006425 ORTHO05D007312 0.0e+00 1657.9 1068 75.8
Phvul.006G115200 Phaseolus vulgaris HOM05D006425 ORTHO05D007312 0.0e+00 1656.0 1081 75.9
FAN06G4481 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1655.2 1073 77.1
Lj7C496T17 Lonicera japonica HOM05D006425 ORTHO05D007312 0.0e+00 1655.2 1085 76.5
arahy.Tifrunner.gnm1.ann1.V6VX4F Arachis hypogaea HOM05D006425 ORTHO05D007312 0.0e+00 1652.1 1114 74.2
Glyma.19G257700 Glycine max HOM05D006425 ORTHO05D007312 0.0e+00 1651.7 1077 76.0
CsaV3_3G007870 Cucumis sativus L. HOM05D006425 ORTHO05D007312 0.0e+00 1651.0 1087 75.1
Gohir.D12G117200 Gossypium hirsutum HOM05D006425 ORTHO05D007312 0.0e+00 1648.6 1081 75.9
COL.COLO4_06242 Corchorus olitorius HOM05D006425 ORTHO05D007312 0.0e+00 1648.3 1100 75.2
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 0.0e+00 1647.9 1065 77.4
Gorai.008G127000 Gossypium raimondii HOM05D006425 ORTHO05D007312 0.0e+00 1645.9 1064 76.5
Lj1g0017915 Lotus japonicus HOM05D006425 ORTHO05D007312 0.0e+00 1645.9 1067 76.5
PGR102G0287 Punica granatum HOM05D006425 ORTHO05D007312 0.0e+00 1645.6 1071 76.3
Glyma.03G259000 Glycine max HOM05D006425 ORTHO05D007312 0.0e+00 1644.0 1081 74.9
FAN06G3842 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1637.9 1077 76.6
FAN01G0442 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1635.2 1077 76.4
TPR.G4756 Trifolium pratense HOM05D006425 ORTHO05D007312 0.0e+00 1635.2 1070 75.6
Ca_09524_v3 Cicer arietinum L. HOM05D006425 ORTHO05D007312 0.0e+00 1630.5 1069 75.4
FAN03G0670 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1629.4 1078 75.8
Rhsim07G0002300 Rhododendron simsii HOM05D006425 ORTHO05D007312 0.0e+00 1624.4 1074 76.3
Lalb_Chr04g0261441 Lupinus albus HOM05D006425 ORTHO05D007312 0.0e+00 1613.2 1067 74.0
Oeu007875.1 Olea europaea HOM05D006425 ORTHO05D007312 0.0e+00 1612.8 1077 74.1
arahy.Tifrunner.gnm1.ann1.GF075D Arachis hypogaea HOM05D006425 ORTHO05D007312 0.0e+00 1608.2 1121 72.6
THA.LOC104815884 Tarenaya hassleriana HOM05D006425 ORTHO05D007312 0.0e+00 1606.7 1072 73.8
Medtr7g117870 Medicago truncatula HOM05D006425 ORTHO05D007312 0.0e+00 1606.3 1070 75.0
Psat3g001600 Pisum sativum HOM05D006425 ORTHO05D007312 0.0e+00 1605.1 1069 74.7
Thhalv10006637m.g Eutrema salsugineum HOM05D006425 ORTHO05D007312 0.0e+00 1597.0 1075 73.9
Nn1g00347 Nelumbo nucifera HOM05D006425 ORTHO05D007312 0.0e+00 1590.9 1075 73.8
CARHR001250 Cardamine hirsuta HOM05D006425 ORTHO05D007312 0.0e+00 1586.2 1073 73.8
ECA236G2333 Erigeron canadensis HOM05D006425 ORTHO05D007312 0.0e+00 1585.5 1060 74.4
PGSC0003DMG400000238 Solanum tuberosum HOM05D006425 ORTHO05D007312 0.0e+00 1584.3 1074 73.8
Carub.0008s1137 Capsella rubella HOM05D006425 ORTHO05D007312 0.0e+00 1582.8 1072 73.4
Sp1g01070 Schrenkiella parvula HOM05D006425 ORTHO05D007312 0.0e+00 1582.8 1083 72.6
AL1G11260 Arabidopsis lyrata HOM05D006425 ORTHO05D007312 0.0e+00 1579.3 1064 73.6
AUR62022731 Chenopodium quinoa HOM05D006425 ORTHO05D007312 0.0e+00 1577.4 1088 73.6
BraA09t42237Z Brassica rapa HOM05D006425 ORTHO05D007312 0.0e+00 1575.8 1074 72.8
MBI12_g20265_MAGBIO Magnolia biondii HOM05D006425 ORTHO05D007312 0.0e+00 1575.8 1091 72.9
Solyc01g096160.4 Solanum lycopersicum HOM05D006425 ORTHO05D007312 0.0e+00 1575.5 1074 74.1
CAN.G1415.13 Capsicum annuum HOM05D006425 ORTHO05D007312 0.0e+00 1574.7 1074 73.6
A09p69000 Brassica napus HOM05D006425 ORTHO05D007312 0.0e+00 1573.9 1071 72.7
C08p53570 Brassica napus HOM05D006425 ORTHO05D007312 0.0e+00 1566.2 1071 72.4
BolC8t52871H Brassica oleracea HOM05D006425 ORTHO05D007312 0.0e+00 1565.1 1071 72.4
ClCG05G000660 Citrullus lanatus HOM05D006425 ORTHO05D007312 0.0e+00 1562.7 1078 73.2
Aqoxy5G04315 Aquilegia oxysepala HOM05D006425 ORTHO05D007312 0.0e+00 1562.4 1078 71.3
Cc02_g39660 Coffea canephora HOM05D006425 ORTHO05D007312 0.0e+00 1562.4 1093 70.6
Sc13g0006630 Simmondsia chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1560.0 1061 72.6
MELO3C006005.2 Cucumis melo HOM05D006425 ORTHO05D007312 0.0e+00 1557.0 1081 72.5
Ciclev10018702m.g Citrus clementina HOM05D006425 ORTHO05D007312 0.0e+00 1555.0 978 78.9
Ah.05g179300 Amaranthus hybridus HOM05D006425 ORTHO05D007312 0.0e+00 1554.7 1077 72.4
Migut.B01889 Erythranthe guttata HOM05D006425 ORTHO05D007312 0.0e+00 1552.0 1070 72.0
Hund27175 Selenicereus undatus HOM05D006425 ORTHO05D007312 0.0e+00 1551.2 1095 71.9
HanXRQChr04g0120411 Helianthus annuus HOM05D006425 ORTHO05D007312 0.0e+00 1543.1 1066 72.0
AUR62004524 Chenopodium quinoa HOM05D006425 ORTHO05D007312 0.0e+00 1542.3 1080 72.6
PSO782G0220 Papaver somniferum HOM05D006425 ORTHO05D007312 0.0e+00 1540.8 1077 71.9
Aa31LG1G10590 Aethionema arabicum HOM05D006425 ORTHO05D007312 0.0e+00 1538.1 1070 72.1
PSO063G5968 Papaver somniferum HOM05D006425 ORTHO05D007312 0.0e+00 1537.7 1077 72.1
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 0.0e+00 1536.5 1074 72.8
SGA_v2.0_scaffold22G09958 Striga asiatica HOM05D006425 ORTHO05D007312 0.0e+00 1520.4 1080 70.2
Peaxi162Scf00345g00024 Petunia axillaris HOM05D006425 ORTHO05D007312 0.0e+00 1512.3 1075 71.9
vmacro04289 Vaccinium macrocarpon HOM05D006425 ORTHO05D007312 0.0e+00 1505.0 1203 65.3
Nitab4.5_0006770g0030 Nicotiana tabacum HOM05D006425 ORTHO05D007312 0.0e+00 1501.1 1074 71.8
SalBow3G3533 Salvia bowleyana HOM05D006425 ORTHO05D007312 0.0e+00 1437.9 1128 65.8
AT1G01220 Arabidopsis thaliana HOM05D006425 ORTHO05D007312 0.0e+00 1430.6 942 74.6
HPP92_015094 Vanilla planifolia HOM05D006425 ORTHO05D007312 0.0e+00 1422.1 1069 66.7
Lsat_1_v5_gn_7_2761 Lactuca sativa HOM05D006425 ORTHO05D007312 0.0e+00 1407.1 1082 67.4
ATR0757G210 Amborella trichopoda HOM05D006425 ORTHO05D007312 0.0e+00 1406.3 1074 65.8
Lj1g0006712 Lotus japonicus HOM05D006425 ORTHO05D007312 0.0e+00 1401.3 944 74.4
Os03g0115100 Oryza sativa ssp. japonica HOM05D006425 ORTHO05D007312 0.0e+00 1375.5 1080 64.0
Zm00001eb001000 Zea mays HOM05D006425 ORTHO05D007312 0.0e+00 1344.3 1079 62.2
CiPaw.02G042200 Carya illinoinensis HOM05D006425 ORTHO05D007312 0.0e+00 1341.6 762 86.4
SHI13064 Sapria himalayana HOM05D006425 ORTHO05D007312 0.0e+00 1335.9 1199 58.3
unitig_899.g14792 Utricularia gibba HOM05D006425 ORTHO05D007312 0.0e+00 1243.8 1066 59.9
Prupe.2G192700 Prunus persica HOM05D006425 ORTHO05D007312 0.0e+00 1233.0 754 80.1
Nitab4.5_0000307g0050 Nicotiana tabacum HOM05D006425 ORTHO05D007312 0.0e+00 1229.5 965 66.9
Actinidia07981 Actinidia chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1206.0 1085 61.2
EL10Ac1g00230 Beta vulgaris HOM05D006425 ORTHO05D007312 0.0e+00 1144.8 759 75.6
Gohir.A12G113700 Gossypium hirsutum HOM05D006425 ORTHO05D007312 0.0e+00 1099.3 719 75.5
Actinidia20260 Actinidia chinensis HOM05D006425 ORTHO05D007312 4.9e-290 1001.5 1018 56.7
Mapoly0065s0064 Marchantia polymorpha HOM05D006425 ORTHO05D007312 4.9e-290 1001.5 1077 49.7
Pp3c27_4880 Physcomitrium patens HOM05D006425 ORTHO05D007312 5.5e-273 944.9 1076 49.1
Sopen01g039900 Solanum pennellii HOM05D006425 ORTHO05D007312 3.5e-259 899.0 613 73.1
SEGI_19319 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 5.4e-244 848.6 716 61.0
BcaC07g42431 Brassica carinata HOM05D006425 ORTHO05D007312 7.7e-235 818.1 537 75.2
AagrBONN_evm.TU.Sc2ySwM_368.2372 Anthoceros agrestis HOM05D006425 ORTHO05D007312 5.2e-231 805.4 1015 45.0
BcaC07g42430 Brassica carinata HOM05D006425 ORTHO05D007312 5.8e-206 722.2 503 70.0
Sed0002059 Sechium edule HOM05D006425 ORTHO05D007312 7.6e-206 721.8 654 59.0
CBR_g42133 Chara braunii HOM05D006425 ORTHO05D007312 1.6e-187 661.0 1510 32.2
Sopen01g039890 Solanum pennellii HOM05D006425 ORTHO05D007312 2.5e-169 600.5 401 76.1
Gohir.A12G113750 Gossypium hirsutum HOM05D006425 ORTHO05D007312 1.6e-139 501.5 336 76.2
Hma1.2p1_0180F.1_g079620 Hydrangea macrophylla HOM05D006425 ORTHO05D007312 1.7e-88 332.0 203 78.3
MD01G1085000 Malus domestica HOM05D006425 ORTHO05D007312 1.5e-65 255.8 163 72.4
Hma1.2p1_0180F.1_g079630 Hydrangea macrophylla HOM05D006425 ORTHO05D007312 1.4e-39 169.5 115 73.9
SEGI_38786 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 9.4e-23 113.6 59 83.1
Actinidia20216 Actinidia chinensis HOM05D006425 ORTHO05D007312 3.7e-19 101.7 54 81.5
VMungo0720G2246 Vigna mungo HOM05D006425 ORTHO05D007312 4.1e-18 98.2 65 66.2
MCO11G284 Micromonas commoda HOM05D006425 ORTHO05D007312 1.2e-12 80.1 534 20.6
CSS0018706 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 2.8e-11 75.5 54 61.1
CSS0027474 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 2.8e-11 75.5 54 61.1
TPR.G10878 Trifolium pratense HOM05D020190 ORTHO05D018030 1.4e-10 73.2 73 52.1
TPR.G39590 Trifolium pratense HOM05D020190 ORTHO05D018030 3.1e-10 72.0 73 50.7
CSS0040683 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 2.7e-09 68.9 40 75.0
SEGI_36326 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 7.2e-07 60.8 90 40.0


User provided reference genes

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