Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003761 Carpinus fangiana HOM05D004242 ORTHO05D004349 3.5e-150 535.4 383 100.0
Haze_15699 Corylus avellana HOM05D004242 ORTHO05D004349 6.4e-75 285.4 436 58.3
QL08p046281 Quercus lobata HOM05D004242 ORTHO05D004349 1.3e-46 191.4 199 59.3
Duzib138G0794 Durio zibethinus HOM05D004242 ORTHO05D004349 4.2e-42 176.4 219 51.6
CiPaw.02G043200 Carya illinoinensis HOM05D004242 ORTHO05D004349 7.1e-42 175.6 420 43.8
Thecc.01G336900 Theobroma cacao HOM05D004242 ORTHO05D004349 2.1e-41 174.1 220 50.5
Glyma.19G258400 Glycine max HOM05D004242 ORTHO05D004349 7.9e-41 172.2 212 49.5
Manes.01G267100 Manihot esculenta HOM05D004242 ORTHO05D004349 3.0e-40 170.2 218 51.8
Actinidia25370 Actinidia chinensis HOM05D004242 ORTHO05D004349 8.7e-40 168.7 223 49.3
Phvul.006G115800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 1.3e-38 164.9 383 39.9
Lalb_Chr15g0076401 Lupinus albus HOM05D004242 ORTHO05D004349 1.4e-37 161.4 204 46.6
Ciclev10019915m.g Citrus clementina HOM05D004242 ORTHO05D004349 1.8e-37 161.0 222 50.9
Lj1g0015234 Lotus japonicus HOM05D004242 ORTHO05D004349 1.8e-37 161.0 221 46.6
Ca_09531_v3 Cicer arietinum L. HOM05D004242 ORTHO05D004349 2.4e-37 160.6 216 46.8
VMungo0540G1056 Vigna mungo HOM05D004242 ORTHO05D004349 2.4e-37 160.6 386 39.1
Glyma.03G259500 Glycine max HOM05D004242 ORTHO05D004349 4.0e-37 159.8 208 48.6
Medtr7g117980 Medicago truncatula HOM05D004242 ORTHO05D004349 2.0e-36 157.5 223 46.2
Gohir.A11G099300 Gossypium hirsutum HOM05D004242 ORTHO05D004349 3.4e-36 156.8 218 48.2
Gorai.007G111100 Gossypium raimondii HOM05D004242 ORTHO05D004349 4.5e-36 156.4 218 48.2
Gohir.D11G103800 Gossypium hirsutum HOM05D004242 ORTHO05D004349 1.3e-35 154.8 218 47.7
arahy.Tifrunner.gnm1.ann1.1EJ222 Arachis hypogaea HOM05D004242 ORTHO05D004349 2.9e-35 153.7 213 46.5
TPR.G4684 Trifolium pratense HOM05D004242 ORTHO05D004349 3.8e-35 153.3 223 44.4
arahy.Tifrunner.gnm1.ann1.16GZH2 Arachis hypogaea HOM05D004242 ORTHO05D004349 8.4e-35 152.1 213 46.5
Sabra14G0075500 Salix brachista HOM05D004242 ORTHO05D004349 2.5e-34 150.6 255 45.1
TWI14G0118 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 2.5e-34 150.6 202 49.0
Potri.014G102466 Populus trichocarpa HOM05D004242 ORTHO05D004349 5.5e-34 149.4 195 51.3
Duzib133G0806 Durio zibethinus HOM05D004242 ORTHO05D004349 2.7e-33 147.1 204 49.0
Potri.002G175400 Populus trichocarpa HOM05D004242 ORTHO05D004349 3.5e-33 146.7 211 46.4
RcHm_v2.0_Chr1g0360631 Rosa chinensis HOM05D004242 ORTHO05D004349 4.6e-33 146.4 231 47.2
Cpa.g.sc144.11 Carica papaya HOM05D004242 ORTHO05D004349 1.0e-32 145.2 203 46.8
RcHm_v2.0_Chr3g0484701 Rosa chinensis HOM05D004242 ORTHO05D004349 1.0e-32 145.2 221 45.7
FvH4_7g17260 Fragaria vesca HOM05D004242 ORTHO05D004349 1.8e-32 144.4 229 47.6
FAN03G1939 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.8e-32 144.4 235 44.7
FAN06G4791 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.8e-32 144.4 229 47.6
FAN06G2582 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.3e-32 144.1 229 47.6
Rhsim07G0001600 Rhododendron simsii HOM05D004242 ORTHO05D004349 2.3e-32 144.1 234 44.9
CSS0005133 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 3.0e-32 143.7 198 47.5
CSS0009998 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 3.0e-32 143.7 198 47.5
FAN22G2040 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.1e-31 141.7 235 47.7
FAN17G2081 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.5e-31 141.4 237 49.4
FAN10G0542 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.5e-31 140.6 236 47.9
Prupe.2G193900 Prunus persica HOM05D004242 ORTHO05D004349 2.5e-31 140.6 236 48.7
Gohir.D07G140400 Gossypium hirsutum HOM05D004242 ORTHO05D004349 7.4e-31 139.0 219 44.3
Atru.chr5.733 Acer truncatum HOM05D004242 ORTHO05D004349 1.3e-30 138.3 227 48.0
Gohir.A07G135500 Gossypium hirsutum HOM05D004242 ORTHO05D004349 1.3e-30 138.3 219 43.8
Manes.05G019100 Manihot esculenta HOM05D004242 ORTHO05D004349 1.3e-30 138.3 270 45.2
Gorai.001G152400 Gossypium raimondii HOM05D004242 ORTHO05D004349 4.8e-30 136.3 219 43.8
TWI59G0661 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 4.8e-30 136.3 194 47.4
FAN01G2496 Fragaria x ananassa HOM05D004242 ORTHO05D004349 3.1e-29 133.7 234 44.9
FAN10G1700 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.2e-28 131.7 235 46.4
CiPaw.02G042800 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.5e-28 131.3 372 34.1
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 2.0e-28 131.0 240 46.2
Eucgr.D02643 Eucalyptus grandis HOM05D004242 ORTHO05D004349 2.0e-28 131.0 201 45.3
FvH4_4g01200 Fragaria vesca HOM05D004242 ORTHO05D004349 4.5e-28 129.8 234 46.6
FAN12G0333 Fragaria x ananassa HOM05D004242 ORTHO05D004349 7.6e-28 129.0 234 46.2
Lsat_1_v5_gn_8_20301 Lactuca sativa HOM05D004242 ORTHO05D004349 3.8e-27 126.7 205 45.4
PGR031G2923 Punica granatum HOM05D004242 ORTHO05D004349 1.9e-26 124.4 144 51.4
Psat3g001320 Pisum sativum HOM05D004242 ORTHO05D004349 3.2e-26 123.6 240 38.3
Lsat_1_v5_gn_3_140940 Lactuca sativa HOM05D004242 ORTHO05D004349 4.2e-26 123.2 206 45.1
Solyc08g067370.1 Solanum lycopersicum HOM05D004242 ORTHO05D004349 9.3e-26 122.1 200 43.0
Hma1.2p1_0309F.1_g120440 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 1.6e-25 121.3 204 44.6
Sopen08g021310 Solanum pennellii HOM05D004242 ORTHO05D004349 2.7e-25 120.6 200 44.5
EL10Ac1g00218 Beta vulgaris HOM05D004242 ORTHO05D004349 4.6e-25 119.8 197 38.1
SGA_v2.0_scaffold98G29435 Striga asiatica HOM05D004242 ORTHO05D004349 4.6e-25 119.8 201 42.3
AT2G46630 Arabidopsis thaliana HOM05D004242 ORTHO05D004349 1.3e-24 118.2 150 52.7
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 8.7e-24 115.5 203 43.3
Ah.05g179200 Amaranthus hybridus HOM05D004242 ORTHO05D004349 1.1e-23 115.2 199 38.2
Lalb_Chr04g0261391 Lupinus albus HOM05D004242 ORTHO05D004349 1.1e-23 115.2 134 50.0
Peaxi162Scf00014g00294 Petunia axillaris HOM05D004242 ORTHO05D004349 1.1e-23 115.2 201 40.3
Oeu004972.1 Olea europaea HOM05D004242 ORTHO05D004349 1.9e-23 114.4 201 39.8
Sp4g28680 Schrenkiella parvula HOM05D004242 ORTHO05D004349 3.3e-23 113.6 212 43.9
PSO210G2709 Papaver somniferum HOM05D004242 ORTHO05D004349 7.4e-23 112.5 150 46.7
MSTRG.20915 Avicennia marina HOM05D004242 ORTHO05D004349 9.7e-23 112.1 195 44.1
A04p34530 Brassica napus HOM05D004242 ORTHO05D004349 1.3e-22 111.7 212 42.9
GSVIVG01027399001 Vitis vinifera HOM05D004242 ORTHO05D004349 1.3e-22 111.7 199 37.7
MSTRG.28279 Avicennia marina HOM05D004242 ORTHO05D004349 1.6e-22 111.3 196 41.3
C04p72290 Brassica napus HOM05D004242 ORTHO05D004349 1.6e-22 111.3 212 42.0
BraA04t18910Z Brassica rapa HOM05D004242 ORTHO05D004349 1.6e-22 111.3 212 42.9
PSO761G0055 Papaver somniferum HOM05D004242 ORTHO05D004349 1.6e-22 111.3 150 50.7
BolC4t28717H Brassica oleracea HOM05D004242 ORTHO05D004349 2.2e-22 110.9 212 42.0
Nitab4.5_0005697g0010 Nicotiana tabacum HOM05D004242 ORTHO05D004349 2.8e-22 110.5 207 39.6
AL4G46060 Arabidopsis lyrata HOM05D004242 ORTHO05D004349 3.7e-22 110.2 213 42.3
CSS0040523 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 3.7e-22 110.2 209 38.3
CAN.G211.7 Capsicum annuum HOM05D004242 ORTHO05D004349 4.8e-22 109.8 205 41.5
CiPaw.02G043000 Carya illinoinensis HOM05D004242 ORTHO05D004349 4.8e-22 109.8 119 52.9
Thhalv10001731m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 6.3e-22 109.4 211 43.1
AUR62004535 Chenopodium quinoa HOM05D004242 ORTHO05D004349 1.1e-21 108.6 173 41.6
MBI13_g41464_MAGBIO Magnolia biondii HOM05D004242 ORTHO05D004349 1.4e-21 108.2 209 41.1
DCAR_002987 Daucus carota HOM05D004242 ORTHO05D004349 2.4e-21 107.5 200 42.5
AUR62022719 Chenopodium quinoa HOM05D004242 ORTHO05D004349 6.9e-21 105.9 185 40.0
BraA05t19116Z Brassica rapa HOM05D004242 ORTHO05D004349 9.1e-21 105.5 215 42.3
Nitab4.5_0000508g0190 Nicotiana tabacum HOM05D004242 ORTHO05D004349 9.1e-21 105.5 206 37.9
TAR339G0002 Trochodendron aralioides HOM05D004242 ORTHO05D004349 1.5e-20 104.8 408 38.7
Oeu042952.1 Olea europaea HOM05D004242 ORTHO05D004349 3.4e-20 103.6 193 37.8
PGSC0003DMG400007374 Solanum tuberosum HOM05D004242 ORTHO05D004349 5.9e-20 102.8 200 41.0
THA.LOC104817612 Tarenaya hassleriana HOM05D004242 ORTHO05D004349 7.7e-20 102.4 222 39.2
Carub.0004s2934 Capsella rubella HOM05D004242 ORTHO05D004349 1.7e-19 101.3 147 50.3
unitig_8.g4995 Utricularia gibba HOM05D004242 ORTHO05D004349 2.9e-19 100.5 203 35.0
CARHR141970 Cardamine hirsuta HOM05D004242 ORTHO05D004349 8.5e-19 99.0 215 41.4
A05p01160 Brassica napus HOM05D004242 ORTHO05D004349 1.4e-18 98.2 215 39.1
BcaC02g12660 Brassica carinata HOM05D004242 ORTHO05D004349 3.2e-18 97.1 216 39.4
C04p01320 Brassica napus HOM05D004242 ORTHO05D004349 3.2e-18 97.1 216 39.4
BolC4t21785H Brassica oleracea HOM05D004242 ORTHO05D004349 9.4e-18 95.5 217 40.6
BcaC02g07046 Brassica carinata HOM05D004242 ORTHO05D004349 1.2e-17 95.1 144 50.0
BcaC02g12659 Brassica carinata HOM05D004242 ORTHO05D004349 1.2e-17 95.1 206 38.8
Dinv32623 Davidia involucrata HOM05D004242 ORTHO05D004349 1.2e-17 95.1 123 48.8
GSVIVG01027401001 Vitis vinifera HOM05D004242 ORTHO05D004349 2.7e-17 94.0 194 36.1
Glyma.07G052632 Glycine max HOM05D004242 ORTHO05D004349 4.6e-17 93.2 208 35.1
Sed0006480 Sechium edule HOM05D004242 ORTHO05D004349 4.6e-17 93.2 212 35.8
arahy.Tifrunner.gnm1.ann1.YBIH8U Arachis hypogaea HOM05D004242 ORTHO05D004349 7.9e-17 92.4 156 42.9
Hma1.2p1_0180F.1_g079790 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 2.3e-16 90.9 202 36.1
Lj3g0014324 Lotus japonicus HOM05D004242 ORTHO05D004349 3.0e-16 90.5 184 37.5
Aa31LG1G28030 Aethionema arabicum HOM05D004242 ORTHO05D004349 5.1e-16 89.7 211 34.1
arahy.Tifrunner.gnm1.ann1.6W400J Arachis hypogaea HOM05D004242 ORTHO05D004349 6.7e-16 89.4 162 39.5
ClCG06G002780 Citrullus lanatus HOM05D004242 ORTHO05D004349 3.3e-15 87.0 386 28.2
ATR0796G195 Amborella trichopoda HOM05D004242 ORTHO05D004349 5.7e-15 86.3 196 37.2
CsaV3_6G008950 Cucumis sativus L. HOM05D004242 ORTHO05D004349 9.7e-15 85.5 402 34.3
Medtr8g027290 Medicago truncatula HOM05D004242 ORTHO05D004349 9.7e-15 85.5 129 42.6
Sed0017381 Sechium edule HOM05D004242 ORTHO05D004349 8.2e-14 82.4 398 32.9
Sp5g01480 Schrenkiella parvula HOM05D004242 ORTHO05D004349 1.4e-13 81.6 211 35.1
Lalb_Chr10g0100731 Lupinus albus HOM05D004242 ORTHO05D004349 3.1e-13 80.5 194 29.9
Sed0012028 Sechium edule HOM05D004242 ORTHO05D004349 3.1e-13 80.5 216 33.8
CDE02G1230 Ceratophyllum demersum HOM05D004242 ORTHO05D004349 9.1e-13 79.0 193 35.8
MELO3C005995.2 Cucumis melo HOM05D004242 ORTHO05D004349 9.1e-13 79.0 158 33.5
Thhalv10006210m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 1.2e-12 78.6 211 34.1
Nn4g22396 Nelumbo nucifera HOM05D004242 ORTHO05D004349 2.0e-12 77.8 209 36.8
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 2.0e-12 77.8 124 37.1
Aqoxy2G02545 Aquilegia oxysepala HOM05D004242 ORTHO05D004349 2.6e-12 77.4 186 38.2
A09p53910 Brassica napus HOM05D004242 ORTHO05D004349 2.6e-12 77.4 205 33.2
C08p36720 Brassica napus HOM05D004242 ORTHO05D004349 2.6e-12 77.4 209 34.0
BolC8t51254H Brassica oleracea HOM05D004242 ORTHO05D004349 2.6e-12 77.4 209 34.0
BraA09t40807Z Brassica rapa HOM05D004242 ORTHO05D004349 2.6e-12 77.4 205 33.2
CsaV3_3G007790 Cucumis sativus L. HOM05D004242 ORTHO05D004349 3.4e-12 77.0 150 33.3
BcaC07g42602 Brassica carinata HOM05D004242 ORTHO05D004349 7.7e-12 75.9 154 38.3
ECA236G3302 Erigeron canadensis HOM05D004242 ORTHO05D004349 2.9e-11 73.9 215 38.1
Phvul.010G116800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 6.5e-11 72.8 193 32.6
Sed0022787 Sechium edule HOM05D004242 ORTHO05D004349 6.5e-11 72.8 177 32.2
ClCG05G000600 Citrullus lanatus HOM05D004242 ORTHO05D004349 8.5e-11 72.4 202 32.2
TAR381G0716 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.9e-10 71.2 126 36.5
ClCG05G000580 Citrullus lanatus HOM05D004242 ORTHO05D004349 2.5e-10 70.9 136 36.8
MELO3C022249.2 Cucumis melo HOM05D004242 ORTHO05D004349 2.5e-10 70.9 399 30.3
Dinv34239 Davidia involucrata HOM05D004242 ORTHO05D004349 2.5e-10 70.9 124 40.3
Sed0013414 Sechium edule HOM05D004242 ORTHO05D004349 2.5e-10 70.9 149 32.9
CsaV3_3G007800 Cucumis sativus L. HOM05D004242 ORTHO05D004349 3.2e-10 70.5 203 30.5
Carub.0005s2862 Capsella rubella HOM05D004242 ORTHO05D004349 4.2e-10 70.1 124 40.3
TAR245G0008 Trochodendron aralioides HOM05D006278 ORTHO05D007526 4.2e-10 70.1 126 35.7
MELO3C005996.2 Cucumis melo HOM05D004242 ORTHO05D004349 5.5e-10 69.7 201 30.3
Sc01g0002380 Simmondsia chinensis HOM05D004242 ORTHO05D004349 5.5e-10 69.7 195 29.7
Dinv18906 Davidia involucrata HOM05D004242 ORTHO05D004349 7.2e-10 69.3 191 37.2
Glyma.16G021500 Glycine max HOM05D004242 ORTHO05D004349 1.6e-09 68.2 211 28.9
VMungo0331G0257 Vigna mungo HOM05D004242 ORTHO05D004349 1.6e-09 68.2 195 32.3
Glyma.07G052566 Glycine max HOM05D004242 ORTHO05D004349 2.1e-09 67.8 211 29.9
DCAR_017552 Daucus carota HOM05D006278 ORTHO05D007526 3.6e-09 67.0 220 25.9
Nitab4.5_0000307g0130 Nicotiana tabacum HOM05D019980 ORTHO05D022204 4.7e-09 66.6 145 33.8
Nitab4.5_0002527g0010 Nicotiana tabacum HOM05D019980 ORTHO05D022204 4.7e-09 66.6 126 36.5
MELO3C005997.2 Cucumis melo HOM05D004242 ORTHO05D004349 7.9e-09 65.9 202 27.2
CsaV3_3G007810 Cucumis sativus L. HOM05D030996 ORTHO05D004349 1.8e-08 64.7 203 27.6
ClCG05G000590 Citrullus lanatus HOM05D004242 ORTHO05D004349 2.3e-08 64.3 114 36.0
Sc23g0001950 Simmondsia chinensis HOM05D004242 ORTHO05D004349 3.0e-08 63.9 119 39.5
CAN.G1415.1 Capsicum annuum HOM05D019980 ORTHO05D022204 6.7e-08 62.8 189 31.2
Lj8P558T23 Lonicera japonica HOM05D012621 ORTHO05D004349 8.8e-08 62.4 125 32.8
Lj5g0016594 Lotus japonicus HOM05D006278 ORTHO05D007526 1.1e-07 62.0 192 27.1
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 2.0e-07 61.2 118 34.7
Aa31LG4G5490 Aethionema arabicum HOM05D006278 ORTHO05D007526 3.3e-07 60.5 199 26.6
Lj8P558T18 Lonicera japonica HOM05D012621 ORTHO05D004349 3.3e-07 60.5 126 33.3
SEGI_05135 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 3.3e-07 60.5 117 35.0
VMungo0331G0961 Vigna mungo HOM05D004242 ORTHO05D004349 4.4e-07 60.1 195 29.2
SGA_v2.0_scaffold201G41409 Striga asiatica HOM05D006278 ORTHO05D007526 5.7e-07 59.7 194 26.8
HPP92_023037 Vanilla planifolia HOM05D004242 ORTHO05D004349 1.3e-06 58.5 163 31.3
Glyma.14G073601 Glycine max HOM05D006278 ORTHO05D007526 1.7e-06 58.2 158 29.1
Lj8P558T21 Lonicera japonica HOM05D012621 ORTHO05D004349 1.7e-06 58.2 126 31.7
Sc02g0005980 Simmondsia chinensis HOM05D006278 ORTHO05D007526 2.2e-06 57.8 200 27.0
VMungo0331G0491 Vigna mungo HOM05D004242 ORTHO05D004349 3.7e-06 57.0 140 32.1
Zm00001eb126760 Zea mays HOM05D041344 ORTHO05D037183 3.7e-06 57.0 144 35.4
ATR0568G158 Amborella trichopoda HOM05D006278 ORTHO05D007526 4.8e-06 56.6 136 27.9
CsaV3_3G007820 Cucumis sativus L. HOM05D030996 ORTHO05D004349 6.3e-06 56.2 195 27.7
Lj9C255T10 Lonicera japonica HOM05D012621 ORTHO05D004349 8.2e-06 55.8 127 32.3
TPR.G20186 Trifolium pratense HOM05D006278 ORTHO05D007526 8.2e-06 55.8 165 27.9


User provided reference genes

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