Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003752 Carpinus fangiana HOM05D005894 ORTHO05D007461 9.5e-175 616.7 302 100.0
Haze_15704 Corylus avellana HOM05D005894 ORTHO05D007461 4.3e-167 591.3 301 95.7
Haze_15713 Corylus avellana HOM05D005894 ORTHO05D007461 3.2e-162 575.1 301 92.7
CiPaw.01G080700 Carya illinoinensis HOM05D005894 ORTHO05D007461 1.8e-141 506.1 307 79.5
Haze_15705 Corylus avellana HOM05D005894 ORTHO05D007461 5.3e-141 504.6 259 95.4
QL08p046715 Quercus lobata HOM05D005894 ORTHO05D007461 3.1e-125 452.2 314 69.1
FAN10G2153 Fragaria x ananassa HOM05D005894 ORTHO05D007461 1.3e-123 446.8 307 70.4
QL08p046701 Quercus lobata HOM05D005894 ORTHO05D007461 7.2e-122 441.0 292 74.3
TWI14G1398 Tripterygium wilfordii HOM05D005894 ORTHO05D007461 7.2e-122 441.0 303 69.0
FAN06G1719 Fragaria x ananassa HOM05D005894 ORTHO05D007461 2.1e-121 439.5 308 69.8
FAN10G4192 Fragaria x ananassa HOM05D005894 ORTHO05D007461 2.1e-121 439.5 308 69.5
FAN03G0327 Fragaria x ananassa HOM05D005894 ORTHO05D007461 1.4e-120 436.8 304 69.7
Potri.002G177500 Populus trichocarpa HOM05D005894 ORTHO05D007461 6.7e-120 434.5 310 68.7
Manes.01G241500 Manihot esculenta HOM05D005894 ORTHO05D007461 5.7e-119 431.4 308 67.5
TAR375G0623 Trochodendron aralioides HOM05D005894 ORTHO05D007461 9.7e-119 430.6 315 65.1
Thecc.01G335500 Theobroma cacao HOM05D005894 ORTHO05D007461 2.8e-118 429.1 311 65.9
MD07G1156900 Malus domestica HOM05D005894 ORTHO05D007461 5.3e-117 424.9 309 66.7
arahy.Tifrunner.gnm1.ann1.UMNZ42 Arachis hypogaea HOM05D005894 ORTHO05D007461 6.9e-117 424.5 327 62.7
arahy.Tifrunner.gnm1.ann1.YB3WUJ Arachis hypogaea HOM05D005894 ORTHO05D007461 6.9e-117 424.5 327 62.7
Duzib133G0870 Durio zibethinus HOM05D005894 ORTHO05D007461 6.9e-117 424.5 314 65.0
ClCG06G002760 Citrullus lanatus HOM05D005894 ORTHO05D007461 3.4e-116 422.2 318 64.2
Nn3g18834 Nelumbo nucifera HOM05D005894 ORTHO05D007461 1.7e-115 419.9 326 62.6
Sabra02G0136100 Salix brachista HOM05D005894 ORTHO05D007461 1.7e-115 419.9 312 64.7
arahy.Tifrunner.gnm1.ann1.FN9JYV Arachis hypogaea HOM05D005894 ORTHO05D007461 2.9e-115 419.1 328 62.5
Ciclev10023878m.g Citrus clementina HOM05D005894 ORTHO05D007461 1.1e-114 417.2 302 67.5
VMungo0331G1846 Vigna mungo HOM05D005894 ORTHO05D007461 1.9e-114 416.4 311 64.6
Cpa.g.sc141.18 Carica papaya HOM05D005894 ORTHO05D007461 2.5e-114 416.0 330 63.6
Prupe.2G195400 Prunus persica HOM05D005894 ORTHO05D007461 5.5e-114 414.8 305 67.2
Atru.chr5.746 Acer truncatum HOM05D005894 ORTHO05D007461 7.2e-114 414.5 288 67.7
Gohir.A07G134700 Gossypium hirsutum HOM05D005894 ORTHO05D007461 1.2e-113 413.7 305 66.2
Duzib138G0081 Durio zibethinus HOM05D005894 ORTHO05D007461 2.7e-113 412.5 318 62.3
Lalb_Chr17g0342931 Lupinus albus HOM05D005894 ORTHO05D007461 3.6e-113 412.1 314 63.1
Gorai.001G151400 Gossypium raimondii HOM05D005894 ORTHO05D007461 6.1e-113 411.4 305 66.2
COL.COLO4_06220 Corchorus olitorius HOM05D005894 ORTHO05D007461 7.9e-113 411.0 315 62.2
Hma1.2p1_0309F.1_g120580 Hydrangea macrophylla HOM05D005894 ORTHO05D007461 1.0e-112 410.6 304 64.8
Sed0016091 Sechium edule HOM05D005894 ORTHO05D007461 3.0e-112 409.1 280 67.9
arahy.Tifrunner.gnm1.ann1.IJN1JI Arachis hypogaea HOM05D005894 ORTHO05D007461 5.1e-112 408.3 312 63.1
Actinidia20275 Actinidia chinensis HOM05D005894 ORTHO05D007461 1.1e-111 407.1 312 65.1
AL1G11320 Arabidopsis lyrata HOM05D005894 ORTHO05D007461 3.3e-111 405.6 308 64.0
Lj3g0011008 Lotus japonicus HOM05D005894 ORTHO05D007461 3.3e-111 405.6 303 64.4
Potri.014G103800 Populus trichocarpa HOM05D005894 ORTHO05D007461 1.7e-110 403.3 270 70.4
Glyma.07G051400 Glycine max HOM05D005894 ORTHO05D007461 2.2e-110 402.9 314 61.5
Gohir.A12G115600 Gossypium hirsutum HOM05D005894 ORTHO05D007461 3.7e-110 402.1 310 61.6
HanXRQChr17g0563091 Helianthus annuus HOM05D005894 ORTHO05D007461 1.1e-109 400.6 286 65.4
Medtr8g024680 Medicago truncatula HOM05D005894 ORTHO05D007461 1.1e-109 400.6 310 61.3
Ca_23494_v3 Cicer arietinum L. HOM05D005894 ORTHO05D007461 1.4e-109 400.2 308 61.0
Ca_29944_v3 Cicer arietinum L. HOM05D005894 ORTHO05D007461 1.4e-109 400.2 308 61.0
Sed0008841 Sechium edule HOM05D005894 ORTHO05D007461 1.4e-109 400.2 278 66.2
CARHR001290 Cardamine hirsuta HOM05D005894 ORTHO05D007461 5.3e-109 398.3 288 64.6
Carub.0001s0103 Capsella rubella HOM05D005894 ORTHO05D007461 7.0e-109 397.9 306 61.4
Phvul.010G118000 Phaseolus vulgaris HOM05D005894 ORTHO05D007461 9.1e-109 397.5 317 60.9
THA.LOC104801356 Tarenaya hassleriana HOM05D005894 ORTHO05D007461 1.5e-108 396.7 305 62.6
vmacro04295 Vaccinium macrocarpon HOM05D005894 ORTHO05D007461 1.5e-108 396.7 295 66.1
AT1G01180 Arabidopsis thaliana HOM05D005894 ORTHO05D007461 2.6e-108 396.0 307 63.8
Lsat_1_v5_gn_4_31980 Lactuca sativa HOM05D005894 ORTHO05D007461 3.5e-108 395.6 291 64.9
PSO063G1123 Papaver somniferum HOM05D005894 ORTHO05D007461 4.5e-108 395.2 321 58.6
Gohir.D12G119200 Gossypium hirsutum HOM05D005894 ORTHO05D007461 5.9e-108 394.8 309 61.2
Rhsim07G0001000 Rhododendron simsii HOM05D005894 ORTHO05D007461 5.9e-108 394.8 303 65.3
MBI04_g25320_MAGBIO Magnolia biondii HOM05D005894 ORTHO05D007461 7.7e-108 394.4 311 62.1
A10p00720 Brassica napus HOM05D005894 ORTHO05D007461 1.0e-107 394.0 302 62.6
BraA10t42349Z Brassica rapa HOM05D005894 ORTHO05D007461 1.0e-107 394.0 302 62.9
Thhalv10008287m.g Eutrema salsugineum HOM05D005894 ORTHO05D007461 1.3e-107 393.7 305 62.3
MSTRG.20917 Avicennia marina HOM05D005894 ORTHO05D007461 1.7e-107 393.3 295 63.1
HanXRQChr16g0524851 Helianthus annuus HOM05D005894 ORTHO05D007461 5.0e-107 391.7 271 66.1
Sp1g01110 Schrenkiella parvula HOM05D005894 ORTHO05D007461 1.9e-106 389.8 306 60.5
C05p00760 Brassica napus HOM05D005894 ORTHO05D007461 2.5e-106 389.4 289 63.7
ECA234G4535 Erigeron canadensis HOM05D005894 ORTHO05D007461 4.2e-106 388.7 287 63.4
Oeu042964.1 Olea europaea HOM05D005894 ORTHO05D007461 5.5e-106 388.3 297 62.6
Lsat_1_v5_gn_4_31960 Lactuca sativa HOM05D005894 ORTHO05D007461 7.2e-106 387.9 283 63.3
Lj2g0016031 Lotus japonicus HOM05D005894 ORTHO05D007461 1.2e-105 387.1 294 65.6
BolC5t28860H Brassica oleracea HOM05D005894 ORTHO05D007461 2.1e-105 386.3 289 63.3
MELO3C022251.2 Cucumis melo HOM05D005894 ORTHO05D007461 2.1e-105 386.3 255 69.4
CsaV3_6G008930 Cucumis sativus L. HOM05D005894 ORTHO05D007461 2.1e-105 386.3 322 58.7
Aa31LG1G10550 Aethionema arabicum HOM05D005894 ORTHO05D007461 2.7e-105 386.0 287 62.0
BcaB03g13563 Brassica carinata HOM05D005894 ORTHO05D007461 3.6e-105 385.6 312 60.9
Sc01g0002310 Simmondsia chinensis HOM05D005894 ORTHO05D007461 3.6e-105 385.6 301 60.8
AUR62004546 Chenopodium quinoa HOM05D005894 ORTHO05D007461 7.4e-103 377.9 336 56.0
ATR0090G035 Amborella trichopoda HOM05D005894 ORTHO05D007461 1.3e-102 377.1 298 62.1
Psat4g216640 Pisum sativum HOM05D005894 ORTHO05D007461 2.8e-102 375.9 327 56.9
Ah.05g179110 Amaranthus hybridus HOM05D005894 ORTHO05D007461 3.1e-101 372.5 317 57.4
Dinv32633 Davidia involucrata HOM05D005894 ORTHO05D007461 3.1e-101 372.5 295 63.7
Peaxi162Scf00767g00044 Petunia axillaris HOM05D005894 ORTHO05D007461 7.0e-101 371.3 312 59.0
MSTRG.20916 Avicennia marina HOM05D005894 ORTHO05D007461 1.0e-99 367.5 315 56.5
TPR.G14294 Trifolium pratense HOM05D005894 ORTHO05D007461 1.3e-99 367.1 303 56.8
Cc02_g39840 Coffea canephora HOM05D005894 ORTHO05D007461 6.5e-99 364.8 331 57.4
Gorai.008G129200 Gossypium raimondii HOM05D005894 ORTHO05D007461 6.5e-99 364.8 310 59.0
PSO782G1789 Papaver somniferum HOM05D005894 ORTHO05D007461 6.5e-99 364.8 325 55.1
PGSC0003DMG400018381 Solanum tuberosum HOM05D005894 ORTHO05D007461 1.9e-98 363.2 313 59.7
Nitab4.5_0000307g0270 Nicotiana tabacum HOM05D005894 ORTHO05D007461 3.2e-98 362.5 319 56.7
Solyc01g096380.1 Solanum lycopersicum HOM05D005894 ORTHO05D007461 7.2e-98 361.3 308 59.4
Ah.07g207870 Amaranthus hybridus HOM05D005894 ORTHO05D007461 2.1e-97 359.8 298 58.7
Sopen00g010520 Solanum pennellii HOM05D005894 ORTHO05D007461 1.0e-96 357.5 311 58.5
AUR62022660 Chenopodium quinoa HOM05D005894 ORTHO05D007461 1.5e-95 353.6 224 69.2
CAN.G1045.39 Capsicum annuum HOM05D005894 ORTHO05D007461 4.4e-95 352.1 310 56.8
SEGI_06461 Sequoiadendron giganteum HOM05D005894 ORTHO05D007461 7.5e-95 351.3 313 53.7
MBI04_g22377_MAGBIO Magnolia biondii HOM05D005894 ORTHO05D007461 1.8e-93 346.7 279 61.3
Migut.B01913 Erythranthe guttata HOM05D005894 ORTHO05D007461 8.5e-91 337.8 296 53.7
Lj9P603T40 Lonicera japonica HOM05D005894 ORTHO05D007461 7.2e-90 334.7 198 72.7
MSTRG.26254 Avicennia marina HOM05D005894 ORTHO05D007461 4.7e-89 332.0 295 55.3
FAN01G2899 Fragaria x ananassa HOM05D005894 ORTHO05D007461 2.3e-88 329.7 225 67.1
Sc01g0002320 Simmondsia chinensis HOM05D005894 ORTHO05D007461 1.7e-86 323.6 308 51.6
Gohir.D07G139300 Gossypium hirsutum HOM05D005894 ORTHO05D007461 4.9e-86 322.0 254 64.2
Sc01g0000420 Simmondsia chinensis HOM05D005894 ORTHO05D007461 5.9e-84 315.1 307 48.9
Pp3c23_20890 Physcomitrium patens HOM05D005894 ORTHO05D007461 6.6e-83 311.6 240 57.5
SGA_v2.0_scaffold5G03060 Striga asiatica HOM05D005894 ORTHO05D007461 6.6e-83 311.6 293 52.9
TPR.G25260 Trifolium pratense HOM05D005894 ORTHO05D007461 6.6e-83 311.6 188 73.4
Pp3c20_5150 Physcomitrium patens HOM05D005894 ORTHO05D007461 3.3e-82 309.3 240 56.7
SalBow3G0292 Salvia bowleyana HOM05D005894 ORTHO05D007461 1.8e-80 303.5 210 62.9
SalBow3G4666 Salvia bowleyana HOM05D005894 ORTHO05D007461 1.8e-80 303.5 210 62.9
Zm00001eb102910 Zea mays HOM05D005894 ORTHO05D007461 5.2e-80 302.0 310 48.7
Zm00001eb102940 Zea mays HOM05D005894 ORTHO05D007461 5.2e-80 302.0 310 48.7
SalBow6G4791 Salvia bowleyana HOM05D005894 ORTHO05D007461 6.8e-80 301.6 296 51.4
EL10Ac5g10561 Beta vulgaris HOM05D005894 ORTHO05D007461 1.4e-77 293.9 321 47.0
Os09g0518900 Oryza sativa ssp. japonica HOM05D005894 ORTHO05D007461 1.4e-77 293.9 312 48.1
AagrBONN_evm.TU.Sc2ySwM_228.2264 Anthoceros agrestis HOM05D005894 ORTHO05D007461 2.9e-75 286.2 239 53.1
Mapoly0044s0088 Marchantia polymorpha HOM05D005894 ORTHO05D007461 8.6e-75 284.6 252 50.0
unitig_52.g17564 Utricularia gibba HOM05D005894 ORTHO05D007461 1.1e-74 284.3 226 56.2
Oeu022737.1 Olea europaea HOM05D005894 ORTHO05D007461 8.6e-67 258.1 153 75.2
unitig_21.g20086 Utricularia gibba HOM05D005894 ORTHO05D007461 5.6e-66 255.4 283 45.9
unitig_744.g24593 Utricularia gibba HOM05D005894 ORTHO05D007461 2.1e-65 253.4 284 46.1
unitig_744.g24591 Utricularia gibba HOM05D005894 ORTHO05D007461 6.8e-64 248.4 284 45.1
RcHm_v2.0_Chr1g0360831 Rosa chinensis HOM05D005894 ORTHO05D007461 8.9e-64 248.1 195 63.1
FAN06G4171 Fragaria x ananassa HOM05D005894 ORTHO05D007461 2.3e-59 233.4 133 78.9
unitig_744.g24581 Utricularia gibba HOM05D005894 ORTHO05D007461 2.1e-57 226.9 239 47.7
Sc17g0001460 Simmondsia chinensis HOM05D005894 ORTHO05D387453 8.4e-54 214.9 303 40.3
EL10Ac1g00202 Beta vulgaris HOM05D005894 ORTHO05D007461 3.3e-50 203.0 136 69.1
SMO367G0414 Selaginella moellendorffii HOM05D005894 ORTHO05D007461 6.4e-46 188.7 137 59.9
RcHm_v2.0_Chr1g0360821 Rosa chinensis HOM05D005894 ORTHO05D007461 1.9e-45 187.2 105 79.0
unitig_21.g20129 Utricularia gibba HOM05D005894 ORTHO05D007461 7.1e-29 132.1 103 55.3
Sc22g0003370 Simmondsia chinensis HOM05D005894 ORTHO05D007461 1.4e-24 117.9 156 42.9
unitig_21.g20130 Utricularia gibba HOM05D005894 ORTHO05D007461 1.0e-14 85.1 126 39.7
unitig_52.g17562 Utricularia gibba HOM05D005894 ORTHO05D420364 7.7e-07 58.9 47 53.2
SMO195G0042 Selaginella moellendorffii HOM05D005894 ORTHO05D376219 5.0e-06 56.2 69 43.5


User provided reference genes

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