Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003750 Carpinus fangiana HOM05D007943 ORTHO05D010047 8.3e-60 233.4 111 100.0
Haze_15717 Corylus avellana HOM05D007943 ORTHO05D010047 2.4e-46 188.7 111 84.7
QL08p046777 Quercus lobata HOM05D007943 ORTHO05D010047 1.8e-33 146.0 98 71.4
CiPaw.01G081100 Carya illinoinensis HOM05D007943 ORTHO05D010047 1.3e-28 129.8 105 63.8
Ciclev10022962m.g Citrus clementina HOM05D007943 ORTHO05D010047 1.3e-20 103.2 112 49.1
Duzib133G1419 Durio zibethinus HOM05D007943 ORTHO05D010047 2.2e-20 102.4 108 48.1
Prupe.2G195800 Prunus persica HOM05D007943 ORTHO05D010047 1.4e-19 99.8 84 56.0
Atru.chr5.749 Acer truncatum HOM05D007943 ORTHO05D010047 1.9e-19 99.4 76 60.5
TPR.G25267 Trifolium pratense HOM05D007943 ORTHO05D010047 1.2e-18 96.7 81 51.9
Medtr8g024630 Medicago truncatula HOM05D007943 ORTHO05D010047 1.6e-18 96.3 80 52.5
Glyma.16G020300 Glycine max HOM05D007943 ORTHO05D010047 2.1e-18 95.9 80 56.2
Lalb_Chr10g0100821 Lupinus albus HOM05D007943 ORTHO05D010047 2.1e-18 95.9 84 51.2
Thecc.01G335100 Theobroma cacao HOM05D007943 ORTHO05D010047 3.5e-18 95.1 82 56.1
GSVIVG01027420001 Vitis vinifera HOM05D007943 ORTHO05D010047 6.0e-18 94.4 55 74.5
Glyma.07G051200 Glycine max HOM05D007943 ORTHO05D010047 7.9e-18 94.0 87 54.0
MD01G1087200 Malus domestica HOM05D007943 ORTHO05D010047 1.8e-17 92.8 54 68.5
Manes.05G017800 Manihot esculenta HOM05D007943 ORTHO05D010047 1.8e-17 92.8 88 54.5
Gohir.A11G100000 Gossypium hirsutum HOM05D007943 ORTHO05D010047 3.0e-17 92.0 54 72.2
Gohir.D07G139100 Gossypium hirsutum HOM05D007943 ORTHO05D010047 3.0e-17 92.0 72 55.6
Gorai.001G151200 Gossypium raimondii HOM05D007943 ORTHO05D010047 3.0e-17 92.0 72 55.6
Gohir.D11G104700 Gossypium hirsutum HOM05D007943 ORTHO05D010047 3.9e-17 91.7 54 72.2
Gorai.007G112000 Gossypium raimondii HOM05D007943 ORTHO05D010047 3.9e-17 91.7 54 72.2
Gohir.A07G134500 Gossypium hirsutum HOM05D007943 ORTHO05D010047 1.5e-16 89.7 72 54.2
Manes.01G241300 Manihot esculenta HOM05D007943 ORTHO05D010047 1.5e-16 89.7 87 48.3
CSS0001750 Camellia sinensis var. sinensis HOM05D007943 ORTHO05D010047 4.3e-16 88.2 91 49.5
MD07G1157400 Malus domestica HOM05D007943 ORTHO05D010047 4.3e-16 88.2 54 66.7
Potri.014G104100 Populus trichocarpa HOM05D007943 ORTHO05D010047 4.3e-16 88.2 85 50.6
Psat4g217240 Pisum sativum HOM05D007943 ORTHO05D010047 5.7e-16 87.8 81 48.1
TAR629G3284 Trochodendron aralioides HOM05D007943 ORTHO05D010047 5.7e-16 87.8 111 45.9
FAN03G2903 Fragaria x ananassa HOM05D007943 ORTHO05D010047 9.7e-16 87.0 55 65.5
Sabra02G0135900 Salix brachista HOM05D007943 ORTHO05D010047 9.7e-16 87.0 85 50.6
Lj3g0013373 Lotus japonicus HOM05D007943 ORTHO05D010047 1.3e-15 86.7 87 46.0
CSS0046577 Camellia sinensis var. sinensis HOM05D007943 ORTHO05D010047 1.6e-15 86.3 114 43.0
RcHm_v2.0_Chr1g0360861 Rosa chinensis HOM05D007943 ORTHO05D010047 2.2e-15 85.9 55 65.5
Lalb_Chr02g0157681 Lupinus albus HOM05D007943 ORTHO05D010047 2.8e-15 85.5 76 52.6
Oeu042966.1 Olea europaea HOM05D007943 ORTHO05D010047 2.8e-15 85.5 73 53.4
FvH4_7g17420 Fragaria vesca HOM05D007943 ORTHO05D010047 3.7e-15 85.1 55 63.6
FAN01G2944 Fragaria x ananassa HOM05D007943 ORTHO05D010047 3.7e-15 85.1 55 63.6
FAN06G1823 Fragaria x ananassa HOM05D007943 ORTHO05D010047 3.7e-15 85.1 55 63.6
FAN10G1708 Fragaria x ananassa HOM05D007943 ORTHO05D010047 4.8e-15 84.7 55 61.8
FAN10G0207 Fragaria x ananassa HOM05D007943 ORTHO05D010047 6.3e-15 84.3 81 49.4
COL.COLO4_06217 Corchorus olitorius HOM05D007943 ORTHO05D010047 1.8e-14 82.8 71 52.1
Nn3g18838 Nelumbo nucifera HOM05D007943 ORTHO05D010047 1.8e-14 82.8 93 49.5
Potri.002G177700 Populus trichocarpa HOM05D007943 ORTHO05D010047 6.9e-14 80.9 89 48.3
TPR.G4732 Trifolium pratense HOM05D007943 ORTHO05D010047 4.5e-13 78.2 85 44.7
Hund16743 Selenicereus undatus HOM05D007943 ORTHO05D010047 5.9e-13 77.8 110 40.9
Glyma.19G259000 Glycine max HOM05D007943 ORTHO05D010047 2.9e-12 75.5 81 40.7
Sed0006019 Sechium edule HOM05D007943 ORTHO05D010047 5.0e-12 74.7 76 48.7
Phvul.006G116500 Phaseolus vulgaris HOM05D007943 ORTHO05D010047 8.5e-12 73.9 59 50.8
arahy.Tifrunner.gnm1.ann1.FJCJ23 Arachis hypogaea HOM05D007943 ORTHO05D010047 1.1e-11 73.6 80 40.0
TAR375G0647 Trochodendron aralioides HOM05D007943 ORTHO05D010047 1.4e-11 73.2 70 54.3
Glyma.03G260100 Glycine max HOM05D007943 ORTHO05D010047 2.5e-11 72.4 76 43.4
MELO3C005988.2 Cucumis melo HOM05D007943 ORTHO05D010047 1.6e-10 69.7 75 37.3
A09p68930 Brassica napus HOM05D007943 ORTHO05D010047 2.1e-10 69.3 81 40.7
CsaV3_3G007690 Cucumis sativus L. HOM05D007943 ORTHO05D010047 2.7e-10 68.9 75 37.3
DCAR_006654 Daucus carota HOM05D007943 ORTHO05D010047 3.6e-10 68.6 51 54.9
Phvul.010G118200 Phaseolus vulgaris HOM05D007943 ORTHO05D010047 3.6e-10 68.6 49 61.2
BolC8t52866H Brassica oleracea HOM05D007943 ORTHO05D010047 4.6e-10 68.2 81 40.7
Sc23g0001870 Simmondsia chinensis HOM05D007943 ORTHO05D010047 1.0e-09 67.0 52 55.8
Carub.0001s0107 Capsella rubella HOM05D007943 ORTHO05D010047 1.4e-09 66.6 54 50.0
Rhsim01G0178600 Rhododendron simsii HOM05D007943 ORTHO05D010047 1.4e-09 66.6 78 47.4
AL1G11360 Arabidopsis lyrata HOM05D007943 ORTHO05D010047 3.0e-09 65.5 53 50.9
AUR62004549 Chenopodium quinoa HOM05D007943 ORTHO05D010047 3.0e-09 65.5 50 56.0
Aqoxy7G00012 Aquilegia oxysepala HOM05D007943 ORTHO05D010047 5.1e-09 64.7 49 55.1
ClCG05G000500 Citrullus lanatus HOM05D007943 ORTHO05D010047 3.3e-08 62.0 50 48.0
CsaV3_3G007710 Cucumis sativus L. HOM05D007943 ORTHO05D010047 3.3e-08 62.0 79 35.4
HPP92_015077 Vanilla planifolia HOM05D000968 ORTHO05D001687 5.7e-08 61.2 51 47.1
Sed0008180 Sechium edule HOM05D007943 ORTHO05D010047 9.7e-08 60.5 50 46.0
Os03g0126900 Oryza sativa ssp. japonica HOM05D007943 ORTHO05D010047 6.3e-07 57.8 60 40.0
Solyc10g009260.1 Solanum lycopersicum HOM05D007943 ORTHO05D010047 8.2e-07 57.4 43 51.2


User provided reference genes

Program Settings