Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003717 Carpinus fangiana HOM05D007869 ORTHO05D009962 1.4e-181 639.4 312 100.0
Haze_15765 Corylus avellana HOM05D007869 ORTHO05D009962 5.2e-176 620.9 312 96.5
CiPaw.02G045900 Carya illinoinensis HOM05D007869 ORTHO05D009962 1.5e-146 523.1 313 80.8
Atru.chr5.803 Acer truncatum HOM05D007869 ORTHO05D009962 2.1e-124 449.5 312 69.6
Prupe.2G203300 Prunus persica HOM05D007869 ORTHO05D009962 7.4e-122 441.0 310 70.0
Duzib138G0629 Durio zibethinus HOM05D007869 ORTHO05D009962 2.2e-121 439.5 306 68.3
RcHm_v2.0_Chr1g0361741 Rosa chinensis HOM05D007869 ORTHO05D009962 2.2e-121 439.5 311 68.2
CANSAT56G0171 Cannabis sativa HOM05D007869 ORTHO05D009962 5.3e-120 434.9 301 69.1
Thecc.01G330400 Theobroma cacao HOM05D007869 ORTHO05D009962 2.0e-119 433.0 306 67.0
FAN10G0101 Fragaria x ananassa HOM05D007869 ORTHO05D009962 4.5e-119 431.8 310 68.1
FAN03G1443 Fragaria x ananassa HOM05D007869 ORTHO05D009962 8.5e-118 427.6 310 67.4
FAN03G2169 Fragaria x ananassa HOM05D007869 ORTHO05D009962 8.5e-118 427.6 310 67.4
FAN06G2096 Fragaria x ananassa HOM05D007869 ORTHO05D009962 8.5e-118 427.6 310 67.4
Sabra02G0132700 Salix brachista HOM05D007869 ORTHO05D009962 1.4e-117 426.8 307 66.4
Manes.05G005500 Manihot esculenta HOM05D007869 ORTHO05D009962 7.2e-117 424.5 304 65.5
Sabra14G0079800 Salix brachista HOM05D007869 ORTHO05D009962 9.4e-117 424.1 307 67.4
Ciclev10021277m.g Citrus clementina HOM05D007869 ORTHO05D009962 6.7e-115 417.9 298 68.1
TWI14G0946 Tripterygium wilfordii HOM05D007869 ORTHO05D009962 2.0e-114 416.4 311 65.0
FAN06G3475 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.2e-111 407.1 294 67.7
Cpa.g.sc57.67 Carica papaya HOM05D007869 ORTHO05D009962 2.0e-111 406.4 304 65.5
COL.COLO4_23074 Corchorus olitorius HOM05D007869 ORTHO05D009962 1.3e-110 403.7 302 65.9
Potri.014G108300 Populus trichocarpa HOM05D007869 ORTHO05D009962 1.3e-110 403.7 296 66.2
Glyma.09G283900 Glycine max HOM05D007869 ORTHO05D009962 1.0e-107 394.0 305 64.3
VMungo0251G2255 Vigna mungo HOM05D007869 ORTHO05D009962 1.0e-107 394.0 304 63.8
TAR374G1227 Trochodendron aralioides HOM05D007869 ORTHO05D009962 1.8e-107 393.3 313 60.7
Lalb_Chr17g0337801 Lupinus albus HOM05D007869 ORTHO05D009962 1.1e-106 390.6 298 62.8
Glyma.20G001800 Glycine max HOM05D007869 ORTHO05D009962 4.4e-106 388.7 305 63.3
Lj2g0022280 Lotus japonicus HOM05D007869 ORTHO05D009962 5.7e-106 388.3 310 62.9
Phvul.003G003700 Phaseolus vulgaris HOM05D007869 ORTHO05D009962 2.8e-105 386.0 305 63.3
Medtr1g038260 Medicago truncatula HOM05D007869 ORTHO05D009962 3.7e-105 385.6 304 60.9
Lalb_Chr04g0258981 Lupinus albus HOM05D007869 ORTHO05D009962 9.1e-104 380.9 299 61.9
TPR.G29782 Trifolium pratense HOM05D007869 ORTHO05D009962 5.9e-103 378.3 304 60.9
Nn3g18755 Nelumbo nucifera HOM05D007869 ORTHO05D009962 1.6e-100 370.2 305 60.3
FAN01G2503 Fragaria x ananassa HOM05D007869 ORTHO05D009962 4.4e-98 362.1 254 69.3
Sc01g0002100 Simmondsia chinensis HOM05D007869 ORTHO05D009962 1.4e-96 357.1 311 55.3
Psat6g099760 Pisum sativum HOM05D007869 ORTHO05D009962 2.4e-96 356.3 285 60.7
FAN10G1242 Fragaria x ananassa HOM05D007869 ORTHO05D009962 4.1e-96 355.5 249 69.1
THA.LOC104825914 Tarenaya hassleriana HOM05D007869 ORTHO05D009962 7.7e-95 351.3 294 59.5
Thhalv10009953m.g Eutrema salsugineum HOM05D007869 ORTHO05D009962 1.6e-92 343.6 298 56.0
Sp1g01350 Schrenkiella parvula HOM05D007869 ORTHO05D009962 2.7e-92 342.8 304 56.6
BraA10t42381Z Brassica rapa HOM05D007869 ORTHO05D009962 6.1e-92 341.7 306 54.6
BolC5t28887H Brassica oleracea HOM05D007869 ORTHO05D009962 1.8e-91 340.1 305 54.4
C05p01060 Brassica napus HOM05D007869 ORTHO05D009962 3.0e-91 339.3 305 54.8
ClCG06G002380 Citrullus lanatus HOM05D007869 ORTHO05D009962 8.8e-91 337.8 278 59.7
CsaV3_6G008420 Cucumis sativus L. HOM05D007869 ORTHO05D009962 8.8e-91 337.8 278 57.9
BcaC05g24607 Brassica carinata HOM05D007869 ORTHO05D009962 1.5e-90 337.0 297 54.9
A10p01030 Brassica napus HOM05D007869 ORTHO05D009962 2.0e-90 336.7 306 53.6
CARHR001570 Cardamine hirsuta HOM05D007869 ORTHO05D009962 6.3e-89 331.6 306 53.9
Carub.0001s0129 Capsella rubella HOM05D007869 ORTHO05D009962 4.5e-87 325.5 310 50.6
Sed0016589 Sechium edule HOM05D007869 ORTHO05D009962 1.9e-85 320.1 277 58.1
Aa31LG1G10230 Aethionema arabicum HOM05D007869 ORTHO05D009962 4.2e-85 318.9 308 51.3
Ah.05g178800 Amaranthus hybridus HOM05D007869 ORTHO05D009962 9.5e-85 317.8 300 54.3
EL10Ac1g00161 Beta vulgaris HOM05D007869 ORTHO05D009962 1.2e-84 317.4 307 52.8
AT2G41610 Arabidopsis thaliana HOM05D007869 ORTHO05D009962 2.3e-83 313.2 303 52.5
Actinidia28076 Actinidia chinensis HOM05D007869 ORTHO05D009962 1.5e-82 310.5 222 68.9
MBI04_g38990_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 5.7e-82 308.5 283 55.5
FvH4_7g18090 Fragaria vesca HOM05D007869 ORTHO05D009962 7.5e-82 308.1 224 70.1
AUR62023523 Chenopodium quinoa HOM05D007869 ORTHO05D009962 1.3e-81 307.4 312 50.3
AL4G39680 Arabidopsis lyrata HOM05D007869 ORTHO05D009962 4.9e-81 305.4 306 51.0
AUR62004577 Chenopodium quinoa HOM05D007869 ORTHO05D009962 2.0e-79 300.1 312 49.4
MELO3C022297.2 Cucumis melo HOM05D007869 ORTHO05D009962 2.0e-79 300.1 277 53.4
Medtr1g038290 Medicago truncatula HOM05D007869 ORTHO05D009962 2.3e-78 296.6 296 50.3
ATR0579G134 Amborella trichopoda HOM05D007869 ORTHO05D009962 6.6e-78 295.0 306 49.7
arahy.Tifrunner.gnm1.ann1.WBP5Q2 Arachis hypogaea HOM05D007869 ORTHO05D009962 3.3e-77 292.7 291 51.5
arahy.Tifrunner.gnm1.ann1.2P25JP Arachis hypogaea HOM05D007869 ORTHO05D009962 6.1e-76 288.5 266 54.9
CSS0017560 Camellia sinensis var. sinensis HOM05D007869 ORTHO05D009962 2.3e-75 286.6 239 62.8
HPP92_007374 Vanilla planifolia HOM05D007869 ORTHO05D009962 3.0e-75 286.2 283 48.8
PSO384G3553 Papaver somniferum HOM05D007869 ORTHO05D009962 2.6e-74 283.1 336 47.6
Gohir.D08G144000 Gossypium hirsutum HOM05D007869 ORTHO05D009962 3.9e-70 269.2 184 69.6
PSO135G1025 Papaver somniferum HOM05D007869 ORTHO05D009962 3.9e-70 269.2 326 46.6
Gorai.004G148700 Gossypium raimondii HOM05D007869 ORTHO05D009962 5.0e-70 268.9 184 69.6
Gohir.A08G122700 Gossypium hirsutum HOM05D007869 ORTHO05D009962 1.9e-69 266.9 184 69.0
Os03g0253600 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 2.5e-69 266.5 325 44.6
Zm00001eb398460 Zea mays HOM05D007869 ORTHO05D009962 5.6e-69 265.4 282 48.9
Lju170C22T1 Lonicera japonica HOM05D007869 ORTHO05D009962 1.4e-67 260.8 218 57.8
Zm00001eb010960 Zea mays HOM05D007869 ORTHO05D009962 1.8e-67 260.4 299 46.2
Os10g0200700 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 2.3e-67 260.0 249 51.8
MBI04_g27772_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 6.4e-65 251.9 233 57.5
Rhsim01G0181500 Rhododendron simsii HOM05D007869 ORTHO05D009962 4.3e-61 239.2 191 61.3
FvH4_7g18120 Fragaria vesca HOM05D007869 ORTHO05D009962 4.7e-60 235.7 169 72.8
Dinv32655 Davidia involucrata HOM05D007869 ORTHO05D009962 2.6e-42 176.8 146 58.9
Duzib133G0538 Durio zibethinus HOM05D007869 ORTHO05D009962 1.8e-27 127.5 195 36.9
SEGI_25376 Sequoiadendron giganteum HOM05D007869 ORTHO05D009962 3.5e-15 86.7 150 40.0


User provided reference genes

Program Settings