Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003694 Carpinus fangiana HOM05D004600 ORTHO05D005471 4.1e-54 214.5 114 100.0
QL02p099100 Quercus lobata HOM05D004600 ORTHO05D005471 3.6e-50 201.4 113 92.9
Thecc.05G234100 Theobroma cacao HOM05D004600 ORTHO05D005471 2.0e-48 195.7 114 87.7
CiPaw.11G057300 Carya illinoinensis HOM05D004600 ORTHO05D005471 3.4e-48 194.9 114 87.7
Gohir.D11G317800 Gossypium hirsutum HOM05D004600 ORTHO05D005471 1.7e-47 192.6 114 87.7
Gorai.007G347600 Gossypium raimondii HOM05D004600 ORTHO05D005471 1.7e-47 192.6 114 87.7
GSVIVG01018312001 Vitis vinifera HOM05D004600 ORTHO05D005471 2.2e-47 192.2 114 86.0
Eucgr.E01748 Eucalyptus grandis HOM05D004600 ORTHO05D005471 2.9e-47 191.8 114 86.8
Hma1.2p1_2581F.1_g324750 Hydrangea macrophylla HOM05D004600 ORTHO05D005471 3.7e-47 191.4 112 88.4
FvH4_7g07840 Fragaria vesca HOM05D004600 ORTHO05D005471 4.9e-47 191.0 115 87.8
FvH4_7g08250 Fragaria vesca HOM05D004600 ORTHO05D005471 4.9e-47 191.0 115 87.8
FAN01G2185 Fragaria x ananassa HOM05D004600 ORTHO05D005471 4.9e-47 191.0 115 87.8
FAN06G4779 Fragaria x ananassa HOM05D004600 ORTHO05D005471 4.9e-47 191.0 115 87.8
CSS0000756 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 6.4e-47 190.7 114 86.0
Duzib177G1065 Durio zibethinus HOM05D004600 ORTHO05D005471 8.3e-47 190.3 114 86.8
ECA234G0066 Erigeron canadensis HOM05D004600 ORTHO05D005471 8.3e-47 190.3 114 83.3
MD07G1080900 Malus domestica HOM05D004600 ORTHO05D005471 1.1e-46 189.9 115 88.7
MD02G1232800 Malus domestica HOM05D004600 ORTHO05D005471 1.9e-46 189.1 115 87.0
Prupe.2G105900 Prunus persica HOM05D004600 ORTHO05D005471 4.1e-46 188.0 115 87.8
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 7.0e-46 187.2 110 86.4
Gohir.A11G302200 Gossypium hirsutum HOM05D004600 ORTHO05D005471 7.0e-46 187.2 114 86.0
PGR042G2124 Punica granatum HOM05D004600 ORTHO05D005471 7.0e-46 187.2 114 84.2
HanXRQChr06g0175191 Helianthus annuus HOM05D004600 ORTHO05D005471 1.2e-45 186.4 114 81.6
Actinidia30941 Actinidia chinensis HOM05D004600 ORTHO05D005471 1.6e-45 186.0 112 85.7
arahy.Tifrunner.gnm1.ann1.FL4BP3 Arachis hypogaea HOM05D004600 ORTHO05D005471 1.6e-45 186.0 114 84.2
CSS0047927 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 1.6e-45 186.0 114 83.3
Manes.08G156800 Manihot esculenta HOM05D004600 ORTHO05D005471 1.6e-45 186.0 114 83.3
arahy.Tifrunner.gnm1.ann1.8V97K8 Arachis hypogaea HOM05D004600 ORTHO05D005471 2.0e-45 185.7 114 84.2
RcHm_v2.0_Chr1g0341631 Rosa chinensis HOM05D004600 ORTHO05D005471 2.0e-45 185.7 115 85.2
Lalb_Chr10g0107261 Lupinus albus HOM05D004600 ORTHO05D005471 3.5e-45 184.9 114 82.5
HanXRQChr17g0540501 Helianthus annuus HOM05D004600 ORTHO05D005471 4.6e-45 184.5 114 80.7
Ca_06414_v3 Cicer arietinum L. HOM05D004600 ORTHO05D005471 7.8e-45 183.7 115 83.5
EL10Ac2g03665 Beta vulgaris HOM05D004600 ORTHO05D005471 1.7e-44 182.6 114 81.6
Phvul.008G274500 Phaseolus vulgaris HOM05D004600 ORTHO05D005471 1.7e-44 182.6 114 81.6
Hund03244 Selenicereus undatus HOM05D004600 ORTHO05D005471 1.7e-44 182.6 114 83.3
Oeu011239.1 Olea europaea HOM05D004600 ORTHO05D005471 3.0e-44 181.8 114 82.5
PSO782G3599 Papaver somniferum HOM05D004600 ORTHO05D005471 3.0e-44 181.8 114 80.7
TAR374G1537 Trochodendron aralioides HOM05D004600 ORTHO05D005471 3.9e-44 181.4 114 84.2
Cpa.g.sc73.56 Carica papaya HOM05D004600 ORTHO05D005471 6.6e-44 180.6 114 82.5
SalBow5G2739 Salvia bowleyana HOM05D004600 ORTHO05D005471 6.6e-44 180.6 114 81.6
SalBow5G4978 Salvia bowleyana HOM05D004600 ORTHO05D005471 6.6e-44 180.6 114 81.6
MBI04_g38566_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 8.6e-44 180.3 114 84.2
Ciclev10033122m.g Citrus clementina HOM05D004600 ORTHO05D005471 1.1e-43 179.9 114 82.5
Lsat_1_v5_gn_3_31540 Lactuca sativa HOM05D004600 ORTHO05D005471 1.1e-43 179.9 114 79.8
PSO063G0817 Papaver somniferum HOM05D004600 ORTHO05D005471 1.1e-43 179.9 114 79.8
Sopen01g030360 Solanum pennellii HOM05D004600 ORTHO05D005471 1.1e-43 179.9 114 79.8
THA.LOC104805733 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 1.1e-43 179.9 114 79.8
TPR.G31719 Trifolium pratense HOM05D004600 ORTHO05D005471 1.1e-43 179.9 115 81.7
Nitab4.5_0006200g0020 Nicotiana tabacum HOM05D004600 ORTHO05D005471 1.5e-43 179.5 114 79.8
Sed0013640 Sechium edule HOM05D004600 ORTHO05D005471 1.5e-43 179.5 112 81.2
Solyc01g068400.3 Solanum lycopersicum HOM05D004600 ORTHO05D005471 1.5e-43 179.5 114 79.8
Carub.0004s1157 Capsella rubella HOM05D004600 ORTHO05D005471 1.9e-43 179.1 114 79.8
Glyma.12G219600 Glycine max HOM05D004600 ORTHO05D005471 1.9e-43 179.1 110 82.7
Rhsim07G0038000 Rhododendron simsii HOM05D004600 ORTHO05D005471 2.5e-43 178.7 114 81.6
DCAR_002257 Daucus carota HOM05D004600 ORTHO05D005471 3.3e-43 178.3 112 80.4
PGSC0003DMG400017954 Solanum tuberosum HOM05D004600 ORTHO05D005471 3.3e-43 178.3 114 78.9
MSTRG.28140 Avicennia marina HOM05D004600 ORTHO05D005471 4.3e-43 177.9 114 82.5
Manes.09G132900 Manihot esculenta HOM05D004600 ORTHO05D005471 4.3e-43 177.9 112 79.5
Aqoxy3G02625 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 5.6e-43 177.6 114 82.5
Aqoxy4G01604 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 5.6e-43 177.6 114 82.5
Migut.N01726 Erythranthe guttata HOM05D004600 ORTHO05D005471 5.6e-43 177.6 114 81.6
THA.LOC104821611 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 7.3e-43 177.2 114 78.9
TWI32G0106 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 7.3e-43 177.2 112 81.2
TWI34G1465 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 7.3e-43 177.2 112 81.2
AT2G30410 Arabidopsis thaliana HOM05D004600 ORTHO05D005471 9.5e-43 176.8 114 78.1
Actinidia05778 Actinidia chinensis HOM05D000441 ORTHO05D005471 2.8e-42 175.3 104 87.5
Potri.013G071100 Populus trichocarpa HOM05D004600 ORTHO05D005471 2.8e-42 175.3 113 80.5
FAN10G3323 Fragaria x ananassa HOM05D004600 ORTHO05D005471 3.6e-42 174.9 146 69.2
Sed0004677 Sechium edule HOM05D004600 ORTHO05D005471 3.6e-42 174.9 112 79.5
Ciclev10017245m.g Citrus clementina HOM05D004600 ORTHO05D005471 4.7e-42 174.5 114 80.7
Glyma.13G281700 Glycine max HOM05D004600 ORTHO05D005471 4.7e-42 174.5 112 80.4
VMungo0647G0484 Vigna mungo HOM05D004600 ORTHO05D005471 4.7e-42 174.5 114 77.2
ClCG06G000640 Citrullus lanatus HOM05D004600 ORTHO05D005471 6.2e-42 174.1 112 77.7
CANSAT56G0524 Cannabis sativa HOM05D004600 ORTHO05D005471 1.8e-41 172.6 111 80.2
Thhalv10017954m.g Eutrema salsugineum HOM05D004600 ORTHO05D005471 2.3e-41 172.2 114 76.3
Sabra13G0062000 Salix brachista HOM05D004600 ORTHO05D005471 2.3e-41 172.2 113 78.8
SalBow2G1105 Salvia bowleyana HOM05D004600 ORTHO05D005471 2.3e-41 172.2 114 78.1
CANSAT80G0198 Cannabis sativa HOM05D004600 ORTHO05D005471 3.1e-41 171.8 111 80.2
CARHR123850 Cardamine hirsuta HOM05D004600 ORTHO05D005471 3.1e-41 171.8 112 76.8
CAN.G179.37 Capsicum annuum HOM05D004600 ORTHO05D005471 4.0e-41 171.4 114 78.1
Nn6g33746 Nelumbo nucifera HOM05D004600 ORTHO05D005471 4.0e-41 171.4 114 82.5
SpUn0968_0010 Schrenkiella parvula HOM05D004600 ORTHO05D005471 6.8e-41 170.6 115 76.5
AUR62010214 Chenopodium quinoa HOM05D004600 ORTHO05D005471 8.9e-41 170.2 114 74.6
AUR62023888 Chenopodium quinoa HOM05D004600 ORTHO05D005471 8.9e-41 170.2 114 74.6
LjContig00272g0018481 Lotus japonicus HOM05D004600 ORTHO05D005471 8.9e-41 170.2 114 75.4
Peaxi162Scf00309g00111 Petunia axillaris HOM05D004600 ORTHO05D005471 8.9e-41 170.2 114 77.2
Medtr5g094290 Medicago truncatula HOM05D004600 ORTHO05D005471 1.5e-40 169.5 115 77.4
AL136U10020 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 2.6e-40 168.7 114 75.4
AL4G25280 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 2.6e-40 168.7 114 75.4
Cc10_g08750 Coffea canephora HOM05D004600 ORTHO05D005471 3.4e-40 168.3 108 77.8
ATR0594G180 Amborella trichopoda HOM05D004600 ORTHO05D005471 4.4e-40 167.9 114 76.3
DCAR_002240 Daucus carota HOM05D000064 ORTHO05D001307 5.8e-40 167.5 106 80.2
MBI14_g39049_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 5.8e-40 167.5 114 78.9
Medtr5g094860 Medicago truncatula HOM05D004600 ORTHO05D005471 2.2e-39 165.6 115 75.7
vmacro13519 Vaccinium macrocarpon HOM05D004600 ORTHO05D005471 2.9e-39 165.2 142 65.5
Carub.0004s0600 Capsella rubella HOM05D004600 ORTHO05D005471 3.7e-39 164.9 112 76.8
CsaV3_6G006410 Cucumis sativus L. HOM05D004600 ORTHO05D005471 2.4e-38 162.2 112 74.1
MELO3C022478.2 Cucumis melo HOM05D004600 ORTHO05D005471 5.4e-38 161.0 112 71.4
HPP92_003331 Vanilla planifolia HOM05D004600 ORTHO05D005471 5.4e-38 161.0 112 75.0
Peaxi162Scf00519g00014 Petunia axillaris HOM05D004600 ORTHO05D005471 7.1e-38 160.6 104 79.8
A05p15020 Brassica napus HOM05D004600 ORTHO05D005471 9.2e-38 160.2 114 72.8
BolC4t23549H Brassica oleracea HOM05D004600 ORTHO05D005471 9.2e-38 160.2 114 72.8
BraA05t20428Z Brassica rapa HOM05D004600 ORTHO05D005471 9.2e-38 160.2 114 72.8
CDE02G3136 Ceratophyllum demersum HOM05D004600 ORTHO05D005471 9.2e-38 160.2 114 73.7
Nitab4.5_0002801g0010 Nicotiana tabacum HOM05D004600 ORTHO05D005471 1.6e-37 159.5 145 61.4
BcaB02g10324 Brassica carinata HOM05D004600 ORTHO05D005471 2.1e-37 159.1 114 72.8
BcaC02g11135 Brassica carinata HOM05D004600 ORTHO05D005471 2.1e-37 159.1 114 72.8
C04p20100 Brassica napus HOM05D004600 ORTHO05D005471 2.1e-37 159.1 114 71.9
BcaB01g04106 Brassica carinata HOM05D004600 ORTHO05D005471 4.6e-37 157.9 114 72.8
Aa31LG2G2070 Aethionema arabicum HOM05D004600 ORTHO05D005471 5.1e-36 154.5 114 71.1
SEGI_02498 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 1.9e-35 152.5 114 71.9
Haze_15791 Corylus avellana HOM05D004600 ORTHO05D005471 3.3e-35 151.8 80 97.5
COL.COLO4_33093 Corchorus olitorius HOM05D004600 ORTHO05D005471 3.6e-34 148.3 91 82.4
Atru.chr2.1648 Acer truncatum HOM05D004600 ORTHO05D005471 3.1e-33 145.2 80 88.8
SEGI_10368 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 6.8e-33 144.1 114 68.4
Os02g0816500 Oryza sativa ssp. japonica HOM05D004600 ORTHO05D005471 4.4e-32 141.4 84 85.7
Duzib106G0868 Durio zibethinus HOM05D004600 ORTHO05D005471 2.2e-31 139.0 77 90.9
Aa31LG5G6310 Aethionema arabicum HOM05D004600 ORTHO05D005471 2.9e-31 138.7 77 88.3
Zm00001eb258870 Zea mays HOM05D004600 ORTHO05D005471 8.4e-31 137.1 79 87.3
unitig_22.g5795 Utricularia gibba HOM05D004600 ORTHO05D005471 2.4e-30 135.6 107 65.4
arahy.Tifrunner.gnm1.ann1.AN2C62 Arachis hypogaea HOM05D004600 ORTHO05D005471 3.2e-30 135.2 94 76.6
BcaNung06780 Brassica carinata HOM05D004600 ORTHO05D005471 3.2e-30 135.2 100 71.0
Psat2g010800 Pisum sativum HOM05D004600 ORTHO05D005471 1.2e-29 133.3 83 80.7
Psat6g223560 Pisum sativum HOM05D004600 ORTHO05D005471 1.2e-29 133.3 83 80.7
COL.COLO4_34174 Corchorus olitorius HOM05D004600 ORTHO05D005471 3.3e-27 125.2 72 86.1
arahy.Tifrunner.gnm1.ann1.TEM6YH Arachis hypogaea HOM05D004600 ORTHO05D005471 9.6e-27 123.6 77 81.8
RcHm_v2.0_Chr1g0341741 Rosa chinensis HOM05D004600 ORTHO05D005471 2.8e-26 122.1 65 90.8
PSO017G3083 Papaver somniferum HOM05D004600 ORTHO05D005471 1.5e-24 116.3 114 58.8
SMO140G0024 Selaginella moellendorffii HOM05D004600 ORTHO05D005471 1.5e-24 116.3 77 74.0
RhsimUnG0214300 Rhododendron simsii HOM05D004600 ORTHO05D005471 1.7e-23 112.8 112 56.2
Mapoly0038s0031 Marchantia polymorpha HOM05D004600 ORTHO05D005471 2.4e-22 109.0 106 52.8
arahy.Tifrunner.gnm1.ann1.M3PSJH Arachis hypogaea HOM05D004254 ORTHO05D005184 2.1e-21 105.9 69 78.3
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 3.5e-21 105.1 102 53.9
CBR_g52286 Chara braunii HOM05D004600 ORTHO05D005471 1.3e-20 103.2 104 54.8
BcaNung05668 Brassica carinata HOM05D004600 ORTHO05D005471 6.6e-20 100.9 77 67.5
Pp3c8_15900 Physcomitrium patens HOM05D004600 ORTHO05D005471 4.3e-19 98.2 109 46.8
BcaNung05666 Brassica carinata HOM05D004600 ORTHO05D005471 5.6e-19 97.8 77 66.2
COL.COLO4_33692 Corchorus olitorius HOM05D004600 ORTHO05D005471 7.3e-19 97.4 100 57.0
Sc01g0008330 Simmondsia chinensis HOM05D004600 ORTHO05D005471 1.1e-17 93.6 62 77.4
AUR62013210 Chenopodium quinoa HOM05D004600 ORTHO05D005471 6.9e-17 90.9 63 68.3
Pp3c5_8620 Physcomitrium patens HOM05D004600 ORTHO05D005471 4.5e-16 88.2 76 55.3
RcHm_v2.0_Chr1g0341961 Rosa chinensis HOM05D004600 ORTHO05D005471 9.9e-16 87.0 51 86.3
FAN01G1805 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.3e-15 86.7 57 82.5
Oeu019263.1 Olea europaea HOM05D004600 ORTHO05D005471 3.8e-15 85.1 55 83.6
MBI18_g40062_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 4.9e-15 84.7 45 91.1
RcHm_v2.0_Chr4g0446751 Rosa chinensis HOM05D004600 ORTHO05D005471 1.9e-14 82.8 50 82.0
Pp3c15_6440 Physcomitrium patens HOM05D004600 ORTHO05D005471 5.4e-14 81.3 104 46.2
Cre16.g670800 Chlamydomonas reinhardtii HOM05D004600 ORTHO05D005471 9.3e-14 80.5 106 44.3
RcHm_v2.0_Chr3g0457191 Rosa chinensis HOM05D004600 ORTHO05D005471 2.1e-13 79.3 51 78.4
SGA_v2.0_scaffold77G25264 Striga asiatica HOM05D000763 ORTHO05D000599 2.7e-13 79.0 95 49.5
HanXRQChr10g0286821 Helianthus annuus HOM05D004600 ORTHO05D005471 3.5e-13 78.6 43 88.4
MCO15G208 Micromonas commoda HOM05D004600 ORTHO05D005471 7.9e-13 77.4 104 45.2
HanXRQChr02g0044381 Helianthus annuus HOM05D004600 ORTHO05D005471 3.0e-12 75.5 43 83.7
RcHm_v2.0_Chr1g0342531 Rosa chinensis HOM05D004600 ORTHO05D005471 5.1e-12 74.7 43 83.7
COL.COLO4_33704 Corchorus olitorius HOM05D004600 ORTHO05D005471 6.7e-12 74.3 92 53.3
arahy.Tifrunner.gnm1.ann1.3LH6CZ Arachis hypogaea HOM05D004600 ORTHO05D021519 1.5e-11 73.2 92 47.8
PRCOL_00002235 Prasinoderma coloniale HOM05D004600 ORTHO05D005471 1.9e-11 72.8 96 42.7
C03p20070 Brassica napus HOM05D004600 ORTHO05D005471 4.3e-11 71.6 99 49.5
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 5.6e-11 71.2 51 64.7
A03p17010 Brassica napus HOM05D004600 ORTHO05D005471 1.3e-10 70.1 60 61.7
BcaC01g05996 Brassica carinata HOM05D004600 ORTHO05D005471 1.8e-09 66.2 97 47.4
Pp3c12_22810 Physcomitrium patens HOM05D004600 ORTHO05D005471 3.1e-09 65.5 59 50.8


User provided reference genes

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