Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003690 Carpinus fangiana HOM05D004483 ORTHO05D005609 1.3e-174 616.3 309 100.0
Cfa001833 Carpinus fangiana HOM05D004483 ORTHO05D005609 7.9e-108 394.4 337 70.6
MD02G1233500 Malus domestica HOM05D004483 ORTHO05D005609 2.4e-104 382.9 314 70.1
Dinv43526 Davidia involucrata HOM05D004483 ORTHO05D005609 9.3e-101 370.9 327 66.4
RcHm_v2.0_Chr1g0342701 Rosa chinensis HOM05D004483 ORTHO05D005609 9.3e-101 370.9 328 67.4
CiPaw.12G019400 Carya illinoinensis HOM05D004483 ORTHO05D005609 1.6e-100 370.2 334 65.9
FAN10G0570 Fragaria x ananassa HOM05D004483 ORTHO05D005609 2.7e-100 369.4 332 66.6
Atru.chr13.1412 Acer truncatum HOM05D004483 ORTHO05D005609 4.6e-100 368.6 329 65.0
FvH4_7g07660 Fragaria vesca HOM05D004483 ORTHO05D005609 6.0e-100 368.2 332 66.3
Prupe.2G104100 Prunus persica HOM05D004483 ORTHO05D005609 1.8e-99 366.7 332 66.3
FAN06G2294 Fragaria x ananassa HOM05D004483 ORTHO05D005609 3.0e-99 365.9 332 66.0
Ciclev10032078m.g Citrus clementina HOM05D004483 ORTHO05D005609 6.7e-99 364.8 329 64.4
COL.COLO4_28409 Corchorus olitorius HOM05D004483 ORTHO05D005609 6.7e-99 364.8 338 64.2
CsaV3_3G009970 Cucumis sativus L. HOM05D004483 ORTHO05D005609 6.7e-99 364.8 334 63.8
MELO3C006218.2 Cucumis melo HOM05D004483 ORTHO05D005609 1.1e-98 364.0 328 63.4
ClCG05G002520 Citrullus lanatus HOM05D004483 ORTHO05D005609 1.5e-98 363.6 334 63.5
SGA_v2.0_scaffold95G28749 Striga asiatica HOM05D004483 ORTHO05D005609 1.5e-98 363.6 335 64.2
TWI34G1657 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 1.5e-98 363.6 329 65.0
Duzib106G2041 Durio zibethinus HOM05D004483 ORTHO05D005609 2.5e-98 362.8 332 65.1
Thecc.05G233500 Theobroma cacao HOM05D004483 ORTHO05D005609 3.3e-98 362.5 329 64.1
Rhsim07G0047000 Rhododendron simsii HOM05D004483 ORTHO05D005609 4.3e-98 362.1 336 63.1
Migut.N01676 Erythranthe guttata HOM05D004483 ORTHO05D005609 5.7e-98 361.7 332 63.9
Manes.08G157300 Manihot esculenta HOM05D004483 ORTHO05D005609 7.4e-98 361.3 332 64.5
Rhsim07G0125200 Rhododendron simsii HOM05D004483 ORTHO05D005609 7.4e-98 361.3 336 62.8
Sed0016930 Sechium edule HOM05D004483 ORTHO05D005609 1.3e-97 360.5 328 62.8
CANSAT78G0548 Cannabis sativa HOM05D004483 ORTHO05D005609 1.6e-97 360.1 330 63.6
Cc00_g12630 Coffea canephora HOM05D004483 ORTHO05D005609 1.6e-97 360.1 331 62.5
TWI32G0950 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 2.1e-97 359.8 329 63.8
MSTRG.4986 Avicennia marina HOM05D004483 ORTHO05D005609 3.7e-97 359.0 334 63.5
Eucgr.E01755 Eucalyptus grandis HOM05D004483 ORTHO05D005609 8.2e-97 357.8 329 62.9
Sopen01g032950 Solanum pennellii HOM05D004483 ORTHO05D005609 8.2e-97 357.8 332 63.3
vmacro13592 Vaccinium macrocarpon HOM05D004483 ORTHO05D005609 1.1e-96 357.5 358 59.5
PGR042G2637 Punica granatum HOM05D004483 ORTHO05D005609 1.8e-96 356.7 329 62.6
Solyc01g081380.4 Solanum lycopersicum HOM05D004483 ORTHO05D005609 2.4e-96 356.3 332 63.0
MD07G1080100 Malus domestica HOM05D004483 ORTHO05D005609 3.1e-96 355.9 331 64.4
PGSC0003DMG400001780 Solanum tuberosum HOM05D004483 ORTHO05D005609 3.1e-96 355.9 332 63.0
CAN.G992.14 Capsicum annuum HOM05D004483 ORTHO05D005609 4.1e-96 355.5 331 63.4
Lalb_Chr07g0191411 Lupinus albus HOM05D004483 ORTHO05D005609 1.5e-95 353.6 339 62.5
Potri.013G072300 Populus trichocarpa HOM05D004483 ORTHO05D005609 1.5e-95 353.6 331 62.2
HanXRQChr01g0019801 Helianthus annuus HOM05D004483 ORTHO05D005609 2.6e-95 352.8 328 61.3
Sabra13G0062300 Salix brachista HOM05D004483 ORTHO05D005609 2.6e-95 352.8 328 64.0
EL10Ac1g00530 Beta vulgaris HOM05D004483 ORTHO05D005609 4.5e-95 352.1 333 63.4
AUR62033324 Chenopodium quinoa HOM05D004483 ORTHO05D005609 4.5e-95 352.1 334 62.0
AUR62033335 Chenopodium quinoa HOM05D004483 ORTHO05D005609 4.5e-95 352.1 334 62.0
arahy.Tifrunner.gnm1.ann1.WXIR9M Arachis hypogaea HOM05D004483 ORTHO05D005609 1.0e-94 350.9 331 62.5
AUR62004320 Chenopodium quinoa HOM05D004483 ORTHO05D005609 1.0e-94 350.9 334 61.7
Nn7g36866 Nelumbo nucifera HOM05D004483 ORTHO05D005609 1.0e-94 350.9 337 62.6
TAR636G1741 Trochodendron aralioides HOM05D004483 ORTHO05D005609 1.0e-94 350.9 334 61.7
Gohir.A08G221606 Gossypium hirsutum HOM05D004483 ORTHO05D005609 1.7e-94 350.1 332 63.3
Gohir.D08G238633 Gossypium hirsutum HOM05D004483 ORTHO05D005609 1.7e-94 350.1 332 63.3
Peaxi162Scf00907g00220 Petunia axillaris HOM05D004483 ORTHO05D005609 2.2e-94 349.7 333 62.2
VMungo0331G1733 Vigna mungo HOM05D004483 ORTHO05D005609 2.2e-94 349.7 338 62.4
CSS0029990 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 2.9e-94 349.4 336 62.2
TAR636G0699 Trochodendron aralioides HOM05D004483 ORTHO05D005609 2.9e-94 349.4 334 61.7
Actinidia05827 Actinidia chinensis HOM05D004483 ORTHO05D005609 3.8e-94 349.0 306 66.7
Lsat_1_v5_gn_1_89980 Lactuca sativa HOM05D004483 ORTHO05D005609 3.8e-94 349.0 328 61.0
Nitab4.5_0000792g0040 Nicotiana tabacum HOM05D004483 ORTHO05D005609 3.8e-94 349.0 325 64.0
Phvul.010G078100 Phaseolus vulgaris HOM05D004483 ORTHO05D005609 6.5e-94 348.2 338 62.1
ECA248G0203 Erigeron canadensis HOM05D004483 ORTHO05D005609 8.4e-94 347.8 327 60.9
Nitab4.5_0012495g0010 Nicotiana tabacum HOM05D004483 ORTHO05D005609 1.4e-93 347.1 336 62.2
CSS0005411 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 2.5e-93 346.3 338 61.8
Sc26g0000980 Simmondsia chinensis HOM05D004483 ORTHO05D005609 2.5e-93 346.3 327 62.1
HanXRQChr11g0343751 Helianthus annuus HOM05D004483 ORTHO05D005609 3.2e-93 345.9 329 60.8
Glyma.01G118200 Glycine max HOM05D004483 ORTHO05D005609 5.5e-93 345.1 336 61.6
Hund27300 Selenicereus undatus HOM05D004483 ORTHO05D005609 7.2e-93 344.7 327 61.2
Ca_04019_v3 Cicer arietinum L. HOM05D004483 ORTHO05D005609 9.3e-93 344.4 328 61.6
arahy.Tifrunner.gnm1.ann1.V3P46G Arachis hypogaea HOM05D004483 ORTHO05D005609 1.2e-92 344.0 337 61.4
Lj3g0001477 Lotus japonicus HOM05D004483 ORTHO05D005609 1.2e-92 344.0 335 62.7
A02p04370 Brassica napus HOM05D004483 ORTHO05D005609 1.6e-92 343.6 329 60.2
C02p09220 Brassica napus HOM05D004483 ORTHO05D005609 1.6e-92 343.6 329 60.2
BolC2t06830H Brassica oleracea HOM05D004483 ORTHO05D005609 1.6e-92 343.6 329 60.2
BraA02t05401Z Brassica rapa HOM05D004483 ORTHO05D005609 1.6e-92 343.6 329 60.2
QL04p053109 Quercus lobata HOM05D004483 ORTHO05D005609 1.6e-92 343.6 458 50.9
Haze_15797 Corylus avellana HOM05D004483 ORTHO05D005609 3.5e-92 342.4 189 92.6
Haze_16727 Corylus avellana HOM05D004483 ORTHO05D005609 4.6e-92 342.0 190 94.2
BcaC03g13531 Brassica carinata HOM05D004483 ORTHO05D005609 7.9e-92 341.3 330 60.3
TPR.G40218 Trifolium pratense HOM05D004483 ORTHO05D005609 7.9e-92 341.3 339 60.8
Thhalv10014088m.g Eutrema salsugineum HOM05D004483 ORTHO05D005609 1.0e-91 340.9 329 59.9
FvH4_3g28610 Fragaria vesca HOM05D004483 ORTHO05D005609 1.0e-91 340.9 338 60.4
Glyma.03G055200 Glycine max HOM05D004483 ORTHO05D005609 1.0e-91 340.9 336 61.0
Glyma.U006202 Glycine max HOM05D004483 ORTHO05D005609 1.0e-91 340.9 336 61.0
Sp6g26600 Schrenkiella parvula HOM05D004483 ORTHO05D005609 1.0e-91 340.9 329 59.9
Aa31LG11G12020 Aethionema arabicum HOM05D004483 ORTHO05D005609 3.0e-91 339.3 336 59.5
FAN25G2123 Fragaria x ananassa HOM05D004483 ORTHO05D005609 6.7e-91 338.2 338 60.4
Medtr5g046560 Medicago truncatula HOM05D004483 ORTHO05D005609 8.7e-91 337.8 338 60.7
CARHR195560 Cardamine hirsuta HOM05D004483 ORTHO05D005609 1.1e-90 337.4 329 59.6
GSVIVG01019237001 Vitis vinifera HOM05D004483 ORTHO05D005609 1.5e-90 337.0 392 54.6
Haze_25407 Corylus avellana HOM05D004483 ORTHO05D005609 2.5e-90 336.3 190 92.1
FAN21G3783 Fragaria x ananassa HOM05D004483 ORTHO05D005609 3.3e-90 335.9 338 59.8
Medtr6g049240 Medicago truncatula HOM05D004483 ORTHO05D005609 4.3e-90 335.5 338 60.1
AL6G28710 Arabidopsis lyrata HOM05D004483 ORTHO05D005609 5.7e-90 335.1 329 59.0
Carub.0006s1586 Capsella rubella HOM05D004483 ORTHO05D005609 9.7e-90 334.3 329 59.0
AT5G17620 Arabidopsis thaliana HOM05D004483 ORTHO05D005609 1.3e-89 334.0 329 59.0
BcaB08g36758 Brassica carinata HOM05D004483 ORTHO05D005609 3.7e-89 332.4 332 59.6
Lj7A559T94 Lonicera japonica HOM05D004483 ORTHO05D005609 3.7e-89 332.4 312 64.1
PSO782G4616 Papaver somniferum HOM05D004483 ORTHO05D005609 4.8e-89 332.0 336 58.6
PSO170G6334 Papaver somniferum HOM05D004483 ORTHO05D005609 6.3e-89 331.6 336 58.6
Gorai.004G254100 Gossypium raimondii HOM05D004483 ORTHO05D005609 5.3e-88 328.6 370 56.5
Psat0s3493g0040 Pisum sativum HOM05D004483 ORTHO05D005609 5.3e-88 328.6 332 60.5
THA.LOC104821152 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 1.3e-86 323.9 321 59.8
THA.LOC104802894 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 3.8e-86 322.4 333 57.1
Cpa.g.sc73.74 Carica papaya HOM05D004483 ORTHO05D005609 1.4e-85 320.5 327 60.2
Potri.019G044100 Populus trichocarpa HOM05D004483 ORTHO05D005609 1.9e-85 320.1 331 58.6
TAR636G1618 Trochodendron aralioides HOM05D004483 ORTHO05D005609 3.0e-83 312.8 317 60.3
ATR0736G160 Amborella trichopoda HOM05D004483 ORTHO05D005609 1.1e-82 310.8 327 57.2
Os01g0869500 Oryza sativa ssp. japonica HOM05D004483 ORTHO05D005609 5.7e-82 308.5 332 54.8
Zm00001eb172120 Zea mays HOM05D004483 ORTHO05D005609 3.7e-81 305.8 331 53.8
SEGI_12813 Sequoiadendron giganteum HOM05D004483 ORTHO05D005609 1.8e-80 303.5 334 54.8
SalBow4G2429 Salvia bowleyana HOM05D004483 ORTHO05D005609 2.4e-80 303.1 304 60.5
TPR.G9231 Trifolium pratense HOM05D004483 ORTHO05D005609 1.5e-79 300.4 337 56.7
unitig_61.g26200 Utricularia gibba HOM05D004483 ORTHO05D005609 1.5e-79 300.4 302 60.3
CDE08G1003 Ceratophyllum demersum HOM05D004483 ORTHO05D005609 5.9e-79 298.5 328 53.7
Medtr4g017150 Medicago truncatula HOM05D004483 ORTHO05D005609 7.9e-76 288.1 334 54.5
FAN25G2538 Fragaria x ananassa HOM05D004483 ORTHO05D005609 6.7e-75 285.0 384 50.5
Oeu041518.1 Olea europaea HOM05D004483 ORTHO05D005609 8.2e-73 278.1 167 86.2
CSS0030130 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.1e-72 277.7 306 57.8
TPR.G14295 Trifolium pratense HOM05D004483 ORTHO05D005609 1.4e-72 277.3 167 87.4
MD02G1233800 Malus domestica HOM05D004483 ORTHO05D005609 4.1e-72 275.8 167 88.6
CSS0038619 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 5.0e-70 268.9 167 84.4
DCAR_025006 Daucus carota HOM05D004483 ORTHO05D005609 6.5e-70 268.5 329 53.5
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 9.1e-64 248.1 279 53.8
Pp3c21_22490 Physcomitrium patens HOM05D004483 ORTHO05D005609 1.2e-60 237.7 332 43.7
SMO266G0007 Selaginella moellendorffii HOM05D004483 ORTHO05D005609 2.1e-60 236.9 323 43.0
Mapoly0042s0051 Marchantia polymorpha HOM05D004483 ORTHO05D005609 6.1e-60 235.3 335 46.6
BcaC04g18774 Brassica carinata HOM05D004483 ORTHO05D005609 3.4e-50 203.0 321 45.5
C09p59550 Brassica napus HOM05D004483 ORTHO05D005609 1.8e-48 197.2 305 44.3
Haze_25412 Corylus avellana HOM05D004483 ORTHO05D005609 5.9e-47 192.2 101 93.1
BraA10t44239Z Brassica rapa HOM05D004483 ORTHO05D005609 5.6e-45 185.7 311 41.8
A10p21790 Brassica napus HOM05D004483 ORTHO05D005609 4.0e-43 179.5 272 45.2
Peaxi162Scf00040g00103 Petunia axillaris HOM05D004483 ORTHO05D005609 4.1e-40 169.5 229 48.0
SHI14408 Sapria himalayana HOM05D004483 ORTHO05D005609 7.0e-40 168.7 180 54.4
Actinidia31738 Actinidia chinensis HOM05D004483 ORTHO05D005609 7.8e-39 165.2 97 85.6
HPP92_018030 Vanilla planifolia HOM05D004483 ORTHO05D005609 1.9e-37 160.6 234 44.4
CBR_g5742 Chara braunii HOM05D004483 ORTHO05D005609 2.5e-37 160.2 169 49.7
Peaxi162Scf00040g00102 Petunia axillaris HOM05D004483 ORTHO05D005609 1.3e-30 137.9 88 77.3
Haze_16728 Corylus avellana HOM05D004483 ORTHO05D005609 1.8e-27 127.5 67 98.5
Medtr5g046460 Medicago truncatula HOM05D004483 ORTHO05D005609 2.0e-26 124.0 74 82.4
MD02G1234000 Malus domestica HOM05D004483 ORTHO05D005609 4.1e-24 116.3 69 85.5
MD02G1235300 Malus domestica HOM05D004483 ORTHO05D005609 1.6e-23 114.4 65 90.8
MD09G1234100 Malus domestica HOM05D004483 ORTHO05D005609 6.0e-23 112.5 64 87.5
Haze_15798 Corylus avellana HOM05D004483 ORTHO05D005609 1.0e-22 111.7 65 92.3
FAN16G0129 Fragaria x ananassa HOM05D004483 ORTHO05D005609 6.6e-22 109.0 65 83.1
Migut.O00822 Erythranthe guttata HOM05D004483 ORTHO05D005609 1.5e-21 107.8 65 83.1
Duzib106G1834 Durio zibethinus HOM05D004483 ORTHO05D005609 5.6e-21 105.9 65 84.6
arahy.Tifrunner.gnm1.ann1.RIX38N Arachis hypogaea HOM05D004483 ORTHO05D005609 9.5e-21 105.1 82 70.7
BolC9t58793H Brassica oleracea HOM05D004483 ORTHO05D005609 4.7e-20 102.8 67 76.1
arahy.Tifrunner.gnm1.ann1.AX0BTM Arachis hypogaea HOM05D004483 ORTHO05D005609 8.1e-20 102.1 65 81.5
arahy.Tifrunner.gnm1.ann1.H3K4HU Arachis hypogaea HOM05D004483 ORTHO05D005609 8.4e-17 92.0 65 76.9
TWI32G0329 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 2.4e-16 90.5 51 90.2
TAR633G0902 Trochodendron aralioides HOM05D004483 ORTHO05D414844 1.2e-15 88.2 46 73.9


User provided reference genes

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