Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003647 Carpinus fangiana HOM05D002451 ORTHO05D005601 0.0e+00 2250.7 1151 100.0
Haze_15848 Corylus avellana HOM05D002451 ORTHO05D005601 0.0e+00 2077.8 1155 93.0
CiPaw.01G231400 Carya illinoinensis HOM05D002451 ORTHO05D005601 0.0e+00 1701.4 1146 77.2
QL05p020031 Quercus lobata HOM05D002451 ORTHO05D005601 0.0e+00 1694.5 1217 72.8
GSVIVG01016980001 Vitis vinifera HOM05D002451 ORTHO05D005601 0.0e+00 1433.7 1150 65.3
Prupe.3G059000 Prunus persica HOM05D002451 ORTHO05D005601 0.0e+00 1429.1 1159 65.2
Dinv37977 Davidia involucrata HOM05D002451 ORTHO05D005601 0.0e+00 1411.4 1150 64.7
MD09G1202800 Malus domestica HOM05D002451 ORTHO05D005601 0.0e+00 1401.0 1148 64.2
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 0.0e+00 1394.4 1160 63.0
Atru.chr1.3524 Acer truncatum HOM05D002451 ORTHO05D005601 0.0e+00 1388.6 1150 63.7
Ciclev10024743m.g Citrus clementina HOM05D002451 ORTHO05D005601 0.0e+00 1365.5 1154 63.1
TWI12G0408 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 0.0e+00 1359.4 1151 62.3
Duzib192G0210 Durio zibethinus HOM05D002451 ORTHO05D005601 0.0e+00 1356.3 1149 63.3
Thecc.06G100100 Theobroma cacao HOM05D002451 ORTHO05D005601 0.0e+00 1355.1 1150 62.9
Potri.003G048800 Populus trichocarpa HOM05D002451 ORTHO05D005601 0.0e+00 1353.6 1152 62.4
Manes.11G033500 Manihot esculenta HOM05D002451 ORTHO05D005601 0.0e+00 1351.7 1147 62.5
RcHm_v2.0_Chr2g0140541 Rosa chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1345.1 1145 61.6
Gorai.010G230600 Gossypium raimondii HOM05D002451 ORTHO05D005601 0.0e+00 1330.5 1150 61.7
Gohir.D06G197800 Gossypium hirsutum HOM05D002451 ORTHO05D005601 0.0e+00 1325.8 1150 61.7
FAN05G4332 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 1318.5 1149 60.7
Nn8g39071 Nelumbo nucifera HOM05D002451 ORTHO05D005601 0.0e+00 1298.9 1151 58.3
CANSAT56G2471 Cannabis sativa HOM05D002451 ORTHO05D005601 0.0e+00 1291.6 1146 60.2
COL.COLO4_30513 Corchorus olitorius HOM05D002451 ORTHO05D005601 0.0e+00 1286.2 1146 60.5
FAN02G1073 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 1279.6 1138 59.7
Rhsim08G0227600 Rhododendron simsii HOM05D002451 ORTHO05D005601 0.0e+00 1273.1 1216 56.5
Glyma.13G354600 Glycine max HOM05D002451 ORTHO05D005601 0.0e+00 1271.9 1149 59.8
Lalb_Chr14g0373021 Lupinus albus HOM05D002451 ORTHO05D005601 0.0e+00 1266.9 1150 59.5
Ca_01165_v3 Cicer arietinum L. HOM05D002451 ORTHO05D005601 0.0e+00 1253.8 1149 58.5
TPR.G6596 Trifolium pratense HOM05D002451 ORTHO05D005601 0.0e+00 1253.4 1149 57.8
Phvul.005G166100 Phaseolus vulgaris HOM05D002451 ORTHO05D005601 0.0e+00 1252.3 1150 58.0
Lj9C513G3 Lonicera japonica HOM05D002451 ORTHO05D005601 0.0e+00 1246.5 1150 57.9
Lj1g0009957 Lotus japonicus HOM05D002451 ORTHO05D005601 0.0e+00 1246.1 1149 58.3
Gohir.A06G189400 Gossypium hirsutum HOM05D002451 ORTHO05D005601 0.0e+00 1245.0 1096 61.0
Sed0021872 Sechium edule HOM05D002451 ORTHO05D005601 0.0e+00 1241.5 1146 57.5
CsaV3_7G035270 Cucumis sativus L. HOM05D002451 ORTHO05D005601 0.0e+00 1239.2 1148 57.4
Medtr2g100870 Medicago truncatula HOM05D002451 ORTHO05D005601 0.0e+00 1230.3 1149 56.9
Glyma.15G019600 Glycine max HOM05D002451 ORTHO05D005601 0.0e+00 1217.6 1149 57.4
FvH4_6g32400 Fragaria vesca HOM05D002451 ORTHO05D005601 0.0e+00 1216.1 1068 60.4
Actinidia32098 Actinidia chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1213.4 1146 56.2
TWI75G1452 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 0.0e+00 1208.4 1149 56.7
PGR102G3176 Punica granatum HOM05D002451 ORTHO05D005601 0.0e+00 1199.5 1146 53.8
arahy.Tifrunner.gnm1.ann1.65X03I Arachis hypogaea HOM05D002451 ORTHO05D005601 0.0e+00 1194.9 1151 55.0
arahy.Tifrunner.gnm1.ann1.T566S8 Arachis hypogaea HOM05D002451 ORTHO05D005601 0.0e+00 1193.3 1150 55.2
MELO3C024437.2 Cucumis melo HOM05D002451 ORTHO05D005601 0.0e+00 1186.0 1105 57.3
Medtr5g085950 Medicago truncatula HOM05D002451 ORTHO05D005601 0.0e+00 1181.0 1149 55.1
Eucgr.F03079 Eucalyptus grandis HOM05D002451 ORTHO05D005601 0.0e+00 1168.7 1100 55.5
Solyc03g121030.2 Solanum lycopersicum HOM05D002451 ORTHO05D005601 0.0e+00 1159.1 1136 54.0
Aqoxy7G01406 Aquilegia oxysepala HOM05D002451 ORTHO05D005601 0.0e+00 1158.3 1147 53.7
PSO063G3373 Papaver somniferum HOM05D002451 ORTHO05D005601 0.0e+00 1158.3 1146 54.7
Cc04_g02550 Coffea canephora HOM05D002451 ORTHO05D005601 0.0e+00 1154.4 1149 52.7
Sopen03g039860 Solanum pennellii HOM05D002451 ORTHO05D005601 0.0e+00 1152.1 1136 53.8
Sc10g0007590 Simmondsia chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1147.5 1159 53.2
PSO832G2466 Papaver somniferum HOM05D002451 ORTHO05D005601 0.0e+00 1140.9 1146 53.9
MBI04_g20307_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D005601 0.0e+00 1132.5 1225 51.3
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 1104.4 1045 57.9
AUR62031915 Chenopodium quinoa HOM05D002451 ORTHO05D005601 0.0e+00 1098.2 1146 51.4
Psat5g295800 Pisum sativum HOM05D002451 ORTHO05D005601 0.0e+00 1097.8 1096 54.8
MSTRG.11027 Avicennia marina HOM05D002451 ORTHO05D005601 0.0e+00 1091.3 1144 52.5
THA.LOC104809828 Tarenaya hassleriana HOM05D002451 ORTHO05D005601 0.0e+00 1090.1 1153 52.6
Migut.I00897 Erythranthe guttata HOM05D002451 ORTHO05D005601 0.0e+00 1088.9 1145 52.2
vmacro18852 Vaccinium macrocarpon HOM05D002451 ORTHO05D005601 0.0e+00 1078.2 1010 56.8
Sp2g18530 Schrenkiella parvula HOM05D002451 ORTHO05D005601 0.0e+00 1075.8 1147 50.7
Thhalv10003552m.g Eutrema salsugineum HOM05D002451 ORTHO05D005601 1.6e-311 1072.8 1142 50.9
AT5G48120 Arabidopsis thaliana HOM05D002451 ORTHO05D005601 5.5e-311 1071.2 1148 49.9
AUR62022206 Chenopodium quinoa HOM05D002451 ORTHO05D005601 1.0e-309 1067.0 1133 51.0
Sabra03G0029300 Salix brachista HOM05D002451 ORTHO05D005601 1.0e-309 1067.0 1100 54.1
AL8G20730 Arabidopsis lyrata HOM05D002451 ORTHO05D005601 1.3e-309 1066.6 1147 49.6
Carub.0008s0769 Capsella rubella HOM05D002451 ORTHO05D005601 7.3e-308 1060.8 1142 49.8
BcaB07g30001 Brassica carinata HOM05D002451 ORTHO05D005601 6.2e-307 1057.7 1146 49.9
BcaC03g17628 Brassica carinata HOM05D002451 ORTHO05D005601 3.2e-303 1045.4 1144 49.6
BraA02t08709Z Brassica rapa HOM05D002451 ORTHO05D005601 5.4e-303 1044.6 1147 49.8
BolC2t11683H Brassica oleracea HOM05D002451 ORTHO05D005601 7.8e-302 1040.8 1145 49.5
C02p56250 Brassica napus HOM05D002451 ORTHO05D005601 3.9e-301 1038.5 1145 49.4
A02p37220 Brassica napus HOM05D002451 ORTHO05D005601 1.1e-300 1036.9 1147 50.0
FAN14G4820 Fragaria x ananassa HOM05D002451 ORTHO05D005601 6.8e-298 1027.7 954 57.0
Hund07601 Selenicereus undatus HOM05D002451 ORTHO05D005601 5.8e-297 1024.6 1150 49.2
Aa31LG11G5160 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.4e-295 1020.0 1143 48.3
CARHR259290 Cardamine hirsuta HOM05D002451 ORTHO05D005601 4.0e-290 1001.9 1150 48.2
Lsat_1_v5_gn_4_97440 Lactuca sativa HOM05D002451 ORTHO05D005601 4.0e-290 1001.9 1137 47.5
HanXRQChr09g0276251 Helianthus annuus HOM05D002451 ORTHO05D005601 3.2e-287 992.3 1145 48.7
ECA232G2699 Erigeron canadensis HOM05D002451 ORTHO05D005601 7.1e-287 991.1 1145 47.2
Nitab4.5_0006902g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 2.3e-285 986.1 1143 49.1
ATR0705G185 Amborella trichopoda HOM05D002451 ORTHO05D005601 1.5e-281 973.4 1166 46.8
Oeu017119.1 Olea europaea HOM05D002451 ORTHO05D005601 9.3e-279 964.1 1075 48.9
CAN.G1143.14 Capsicum annuum HOM05D002451 ORTHO05D005601 4.6e-278 961.8 1029 50.8
ClCG09G000210 Citrullus lanatus HOM05D002451 ORTHO05D005601 1.1e-268 930.6 939 54.1
Ah.01g022090 Amaranthus hybridus HOM05D002451 ORTHO05D005601 5.8e-265 918.3 1142 45.6
Nitab4.5_0006467g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 7.1e-263 911.4 1143 46.8
EL10Ac9g21204 Beta vulgaris HOM05D002451 ORTHO05D005601 5.7e-260 901.7 1070 46.9
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 1.9e-255 886.7 1144 45.0
HPP92_007690 Vanilla planifolia HOM05D002451 ORTHO05D005601 2.1e-254 883.2 1182 43.4
Zm00001eb301230 Zea mays HOM05D002451 ORTHO05D005601 5.7e-252 875.2 1157 42.5
DCAR_023080 Daucus carota HOM05D002451 ORTHO05D005601 1.3e-243 847.4 1146 44.2
Peaxi162Scf00038g01032 Petunia axillaris HOM05D002451 ORTHO05D005601 1.1e-236 824.3 919 48.6
SEGI_26537 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 1.4e-181 641.3 1056 38.5
Pp3c9_4950 Physcomitrium patens HOM05D002451 ORTHO05D005601 5.8e-156 556.2 1193 33.0
Os07g0177100 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D005601 4.6e-145 520.0 655 45.5
Mapoly0036s0119 Marchantia polymorpha HOM05D002451 ORTHO05D005601 7.4e-135 486.1 1188 30.5
Cpa.g.sc25.8 Carica papaya HOM05D002451 ORTHO05D005601 1.8e-133 481.5 520 51.3
unitig_88.g27601 Utricularia gibba HOM05D002451 ORTHO05D005601 1.4e-130 471.9 727 40.4
Aa31sc1931G10 Aethionema arabicum HOM05D002451 ORTHO05D005601 3.6e-129 467.2 530 46.8
TAR624G0206 Trochodendron aralioides HOM05D002451 ORTHO05D005601 3.6e-129 467.2 438 58.0
CSS0036196 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.3e-126 458.8 444 56.8
CSS0044368 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 7.5e-111 406.4 337 61.1
SMO111G0185 Selaginella moellendorffii HOM05D002451 ORTHO05D005601 1.7e-110 405.2 1141 29.1
Aa31LG11G5130 Aethionema arabicum HOM05D002451 ORTHO05D005601 2.7e-105 387.9 452 47.3
CDE05G1834 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 1.2e-92 345.9 442 45.5
ClCG09G000220 Citrullus lanatus HOM05D002451 ORTHO05D005601 1.2e-89 335.9 241 69.7
CBR_g26190 Chara braunii HOM05D002451 ORTHO05D005601 3.0e-75 288.1 1289 25.9
QL05p020001 Quercus lobata HOM05D002451 ORTHO05D005601 5.2e-72 277.3 317 53.3
CDE05G2530 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 3.2e-69 268.1 222 61.3
Cpa.g.sc25.4 Carica papaya HOM05D002451 ORTHO05D005601 5.6e-66 257.3 154 76.0
TAR624G0246 Trochodendron aralioides HOM05D002451 ORTHO05D005601 5.6e-66 257.3 203 67.0
Aa31LG9G10330 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.2e-65 256.1 362 43.4
Cpa.g.sc25.5 Carica papaya HOM05D002451 ORTHO05D005601 2.3e-64 251.9 261 54.8
TAR624G0921 Trochodendron aralioides HOM05D002451 ORTHO05D005601 3.9e-59 234.6 228 55.3
Sc17g0002930 Simmondsia chinensis HOM05D002451 ORTHO05D005601 2.1e-57 228.8 180 63.3
Sabra03G0029200 Salix brachista HOM05D002451 ORTHO05D005601 1.3e-46 193.0 181 57.5
HPP92_007773 Vanilla planifolia HOM05D002451 ORTHO05D005601 1.6e-36 159.5 159 50.9
Psat3g036640 Pisum sativum HOM05D002451 ORTHO05D005601 5.1e-35 154.5 172 48.3
CSS0023144 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 4.8e-33 147.9 122 62.3
TAR624G0431 Trochodendron aralioides HOM05D002451 ORTHO05D005601 8.2e-33 147.1 116 64.7
unitig_88.g27602 Utricularia gibba HOM05D002451 ORTHO05D005601 1.3e-30 139.8 129 58.1
Psat4g171400 Pisum sativum HOM05D002451 ORTHO05D005601 1.9e-29 136.0 138 52.2
EL10Ac9g21205 Beta vulgaris HOM05D002451 ORTHO05D005601 1.6e-28 132.9 177 44.6
SEGI_23779 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 3.0e-27 128.6 113 53.1
MCO12G207 Micromonas commoda HOM05D002451 ORTHO05D005601 3.9e-27 128.3 359 28.1
A06p15140 Brassica napus HOM05D002451 ORTHO05D020166 2.5e-26 125.6 150 48.0
BraA06t24629Z Brassica rapa HOM05D002451 ORTHO05D020166 2.5e-26 125.6 150 48.0
Lj1g0017121 Lotus japonicus HOM05D002451 ORTHO05D005601 5.7e-26 124.4 95 67.4
Cpa.g.sc25.3 Carica papaya HOM05D002451 ORTHO05D005601 9.7e-26 123.6 102 67.6
Aa31LG9G10320 Aethionema arabicum HOM05D002451 ORTHO05D005601 9.0e-24 117.1 117 49.6
Zm00001eb320400 Zea mays HOM05D002451 ORTHO05D005601 1.2e-23 116.7 259 34.7
HPP92_007804 Vanilla planifolia HOM05D002451 ORTHO05D005601 3.4e-23 115.2 202 39.1
CSS0026050 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 2.2e-22 112.5 96 61.5
CSS0028178 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 2.2e-22 112.5 96 61.5
SHI11092 Sapria himalayana HOM05D002451 ORTHO05D005601 6.1e-20 104.4 127 47.2
SHI11090 Sapria himalayana HOM05D002451 ORTHO05D005601 4.3e-18 98.2 63 60.3
SHI11089 Sapria himalayana HOM05D002451 ORTHO05D005601 7.4e-18 97.4 75 65.3
TPR.G18837 Trifolium pratense HOM05D002451 ORTHO05D005601 2.4e-16 92.4 73 68.5
Peaxi162Scf00038g01031 Petunia axillaris HOM05D002451 ORTHO05D005601 2.0e-15 89.4 54 79.6
TPR.G18835 Trifolium pratense HOM05D002451 ORTHO05D005601 5.9e-15 87.8 62 66.1
TPR.G18859 Trifolium pratense HOM05D002451 ORTHO05D005601 2.9e-14 85.5 110 45.5
Cre13.g605050 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D005601 6.5e-14 84.3 151 33.1
Zm00001eb029900 Zea mays HOM05D002451 ORTHO05D005601 6.5e-14 84.3 90 43.3
SGA_v2.0_scaffold123G33404 Striga asiatica HOM05D002451 ORTHO05D005601 2.1e-12 79.3 73 49.3
Medtr5g055460 Medicago truncatula HOM05D002451 ORTHO05D005601 5.7e-10 71.2 48 66.7
Hund28869 Selenicereus undatus HOM05D002451 ORTHO05D005601 7.4e-10 70.9 58 60.3
Hund28828 Selenicereus undatus HOM05D002451 ORTHO05D005601 1.7e-09 69.7 62 56.5
vmacro17797 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 1.7e-09 69.7 76 52.6


User provided reference genes

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