Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 3.8e-140 501.5 259 100.0
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 3.5e-85 318.9 228 70.6
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 4.3e-83 312.0 230 72.6
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 2.1e-82 309.7 230 68.7
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 1.4e-81 307.0 230 70.9
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.8e-81 306.6 226 69.0
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 2.4e-81 306.2 229 68.6
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 4.0e-81 305.4 226 68.6
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 4.0e-81 305.4 229 71.2
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 5.3e-81 305.1 228 71.1
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 6.9e-81 304.7 230 69.1
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 6.9e-81 304.7 243 68.3
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 6.9e-81 304.7 243 68.3
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 2.0e-80 303.1 242 68.2
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 4.5e-80 302.0 228 69.3
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 5.8e-80 301.6 231 71.4
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 7.6e-80 301.2 239 67.8
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 9.9e-80 300.8 228 69.3
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 1.3e-79 300.4 228 68.4
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 1.7e-79 300.1 230 67.8
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 1.7e-79 300.1 229 69.0
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 4.9e-79 298.5 229 69.4
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 4.9e-79 298.5 231 70.1
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 1.4e-78 297.0 259 64.9
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 1.4e-78 297.0 229 68.1
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 1.9e-78 296.6 229 68.1
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 2.4e-78 296.2 228 68.0
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 3.2e-78 295.8 231 68.4
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 4.2e-78 295.4 227 67.8
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 1.6e-77 293.5 230 67.8
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 2.7e-77 292.7 239 66.5
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 4.6e-77 292.0 232 68.5
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 4.6e-77 292.0 222 70.7
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 6.0e-77 291.6 229 69.0
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 7.9e-77 291.2 164 92.1
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 7.9e-77 291.2 227 70.0
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 1.3e-76 290.4 226 66.4
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 1.8e-76 290.0 228 69.3
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 2.3e-76 289.7 239 65.3
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 2.3e-76 289.7 230 68.7
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 5.1e-76 288.5 223 65.5
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 6.7e-76 288.1 226 65.0
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 8.7e-76 287.7 233 64.4
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 1.1e-75 287.3 229 68.1
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 1.9e-75 286.6 227 67.0
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 1.9e-75 286.6 231 68.0
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 2.5e-75 286.2 232 67.7
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 2.5e-75 286.2 232 67.2
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 2.5e-75 286.2 230 65.2
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 4.3e-75 285.4 230 65.7
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 4.3e-75 285.4 226 65.9
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 4.3e-75 285.4 230 67.4
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 1.3e-74 283.9 243 65.0
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 4.8e-74 282.0 229 65.9
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 4.8e-74 282.0 226 64.2
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 6.2e-74 281.6 224 66.1
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 8.1e-74 281.2 226 63.3
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 1.8e-73 280.0 220 66.4
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 1.8e-73 280.0 221 66.1
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 2.4e-73 279.6 228 65.4
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 2.4e-73 279.6 243 63.8
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 4.0e-73 278.9 226 62.8
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 4.0e-73 278.9 229 62.9
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 5.3e-73 278.5 242 64.5
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 9.0e-73 277.7 223 63.2
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 1.5e-72 276.9 226 65.5
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 5.8e-72 275.0 222 62.6
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 7.6e-72 274.6 222 63.1
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 7.6e-72 274.6 226 63.7
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 9.9e-72 274.2 222 63.1
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 1.3e-71 273.9 222 62.6
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 1.3e-71 273.9 229 67.7
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 1.7e-71 273.5 221 63.8
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 2.9e-71 272.7 179 75.4
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 6.4e-71 271.6 222 64.0
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 1.4e-70 270.4 227 65.6
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 3.2e-70 269.2 225 61.8
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 4.2e-70 268.9 222 62.6
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 5.5e-70 268.5 241 62.2
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 5.5e-70 268.5 228 61.0
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 2.1e-69 266.5 322 49.7
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 2.1e-69 266.5 225 62.2
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 1.3e-68 263.8 222 62.6
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 1.3e-68 263.8 222 62.6
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 1.8e-68 263.5 178 74.2
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 1.8e-68 263.5 237 59.9
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 2.3e-68 263.1 190 67.9
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 3.0e-68 262.7 219 62.6
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 6.7e-68 261.5 224 62.1
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 1.5e-67 260.4 178 73.0
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 4.3e-67 258.8 256 57.0
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 1.6e-66 256.9 224 61.2
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 2.1e-66 256.5 224 58.9
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 2.8e-66 256.1 236 58.5
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 6.9e-65 251.5 228 62.7
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 9.0e-65 251.1 223 59.2
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 9.0e-65 251.1 232 59.9
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.5e-64 250.4 310 50.0
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 2.0e-64 250.0 243 58.0
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 2.6e-64 249.6 226 58.4
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 3.4e-64 249.2 224 58.0
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 4.5e-64 248.8 228 62.3
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 4.5e-64 248.8 219 58.4
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 1.0e-63 247.7 221 59.7
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 1.0e-63 247.7 237 57.4
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 2.2e-63 246.5 273 52.0
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 3.8e-63 245.7 220 59.5
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 1.1e-62 244.2 241 58.1
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 2.5e-59 233.0 225 56.4
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 5.7e-59 231.9 195 61.5
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 1.1e-57 227.6 224 56.2
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 5.3e-57 225.3 241 50.2
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 1.0e-55 221.1 190 57.9
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 1.9e-54 216.9 229 52.8
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 7.2e-54 214.9 220 51.4
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 6.7e-52 208.4 232 49.6
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 8.8e-52 208.0 224 50.9
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 2.5e-51 206.5 179 62.0
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 5.9e-48 195.3 163 62.6
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 1.0e-44 184.5 211 52.6
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 1.0e-44 184.5 217 49.8
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 6.7e-44 181.8 237 46.0
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 2.0e-43 180.3 196 53.6
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 5.7e-43 178.7 246 44.3
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 3.7e-42 176.0 114 73.7
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 1.4e-41 174.1 121 74.4
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 1.0e-39 167.9 125 69.6
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 1.4e-38 164.1 147 61.9
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.8e-36 157.1 121 64.5
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 1.3e-34 151.0 193 49.2
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 3.5e-32 142.9 243 41.2
PSO170G1437 Papaver somniferum HOM05D005017 ORTHO05D006044 2.9e-31 139.8 103 67.0
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 8.0e-29 131.7 109 63.3
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 4.0e-28 129.4 117 58.1
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 1.5e-27 127.5 233 38.2
Cre03.g201776 Chlamydomonas reinhardtii HOM05D005017 ORTHO05D006044 1.9e-22 110.5 178 34.3
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 4.2e-22 109.4 58 84.5
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 1.6e-21 107.5 181 35.9
PRCOL_00005001 Prasinoderma coloniale HOM05D005017 ORTHO05D006044 1.0e-20 104.8 191 36.6
PSO135G0227 Papaver somniferum HOM05D005017 ORTHO05D006044 2.6e-19 100.1 76 64.5
PSO782G0965 Papaver somniferum HOM05D005017 ORTHO05D006044 9.8e-19 98.2 76 63.2
PSO675G1433 Papaver somniferum HOM05D005017 ORTHO05D006044 1.3e-18 97.8 76 63.2
Oeu026734.1 Olea europaea HOM05D005017 ORTHO05D006044 1.1e-17 94.7 57 82.5
CSS0004179 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 8.3e-10 68.6 77 50.6
TAR383G0476 Trochodendron aralioides HOM05D005017 ORTHO05D006044 1.5e-06 57.8 34 70.6


User provided reference genes

Program Settings