Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003580 Carpinus fangiana HOM05D006504 ORTHO05D007867 1.2e-40 169.5 87 100.0
CiPaw.01G224400 Carya illinoinensis HOM05D006504 ORTHO05D007867 1.6e-34 149.1 87 88.5
Prupe.3G049000 Prunus persica HOM05D006504 ORTHO05D007867 6.4e-31 137.1 87 80.5
GSVIVG01016863001 Vitis vinifera HOM05D006504 ORTHO05D007867 6.4e-31 137.1 87 81.6
Hma1.2p1_0388F.1_g142400 Hydrangea macrophylla HOM05D006504 ORTHO05D007867 8.3e-31 136.7 87 80.5
Potri.003G037200 Populus trichocarpa HOM05D006504 ORTHO05D007867 1.1e-30 136.3 87 79.3
Duzib235G1492 Durio zibethinus HOM05D006504 ORTHO05D007867 1.4e-30 136.0 87 78.2
TAR383G0025 Trochodendron aralioides HOM05D006504 ORTHO05D007867 3.2e-30 134.8 85 81.2
Atru.chr1.3757 Acer truncatum HOM05D006504 ORTHO05D007867 5.4e-30 134.0 87 77.0
CSS0018438 Camellia sinensis var. sinensis HOM05D006504 ORTHO05D007867 5.4e-30 134.0 87 79.3
Lalb_Chr25g0280741 Lupinus albus HOM05D006504 ORTHO05D007867 5.4e-30 134.0 87 78.2
TWI31G0577 Tripterygium wilfordii HOM05D006504 ORTHO05D007867 5.4e-30 134.0 87 80.5
arahy.Tifrunner.gnm1.ann1.2CYW67 Arachis hypogaea HOM05D006504 ORTHO05D007867 1.2e-29 132.9 87 77.0
arahy.Tifrunner.gnm1.ann1.S1QT98 Arachis hypogaea HOM05D006504 ORTHO05D007867 1.2e-29 132.9 87 77.0
COL.COLO4_30670 Corchorus olitorius HOM05D006504 ORTHO05D007867 1.2e-29 132.9 87 77.0
Manes.11G025900 Manihot esculenta HOM05D006504 ORTHO05D007867 1.2e-29 132.9 85 78.8
Gohir.D05G137200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 2.1e-29 132.1 87 75.9
Gorai.009G141600 Gossypium raimondii HOM05D006504 ORTHO05D007867 2.1e-29 132.1 87 75.9
QL05p000757 Quercus lobata HOM05D006504 ORTHO05D007867 2.1e-29 132.1 86 80.2
Glyma.07G009300 Glycine max HOM05D006504 ORTHO05D007867 3.5e-29 131.3 87 75.9
arahy.Tifrunner.gnm1.ann1.IBA4C6 Arachis hypogaea HOM05D006504 ORTHO05D007867 4.6e-29 131.0 87 75.9
Gohir.A05G135200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 4.6e-29 131.0 87 74.7
QL05p000665 Quercus lobata HOM05D006504 ORTHO05D007867 4.6e-29 131.0 86 79.1
Sc12g0010270 Simmondsia chinensis HOM05D006504 ORTHO05D007867 7.8e-29 130.2 86 75.6
CsaV3_3G043850 Cucumis sativus L. HOM05D006504 ORTHO05D007867 1.0e-28 129.8 87 74.7
Medtr8g017180 Medicago truncatula HOM05D006504 ORTHO05D007867 1.0e-28 129.8 87 74.7
VMungo0331G1418 Vigna mungo HOM05D006504 ORTHO05D007867 1.3e-28 129.4 87 75.9
Glyma.08G192500 Glycine max HOM05D006504 ORTHO05D007867 2.3e-28 128.6 86 74.4
Manes.04G140200 Manihot esculenta HOM05D006504 ORTHO05D007867 2.3e-28 128.6 87 75.9
Psat4g188440 Pisum sativum HOM05D006504 ORTHO05D007867 2.3e-28 128.6 87 73.6
RcHm_v2.0_Chr2g0143361 Rosa chinensis HOM05D006504 ORTHO05D007867 2.3e-28 128.6 87 75.9
Cpa.g.sc25.42 Carica papaya HOM05D006504 ORTHO05D007867 3.9e-28 127.9 85 75.3
Nn8g38840 Nelumbo nucifera HOM05D006504 ORTHO05D007867 3.9e-28 127.9 85 75.3
Cc05_g02540 Coffea canephora HOM05D006504 ORTHO05D007867 5.1e-28 127.5 85 75.3
FvH4_6g33500 Fragaria vesca HOM05D006504 ORTHO05D007867 5.1e-28 127.5 87 77.0
FAN14G5793 Fragaria x ananassa HOM05D006504 ORTHO05D007867 5.1e-28 127.5 87 77.0
Lj3g0009120 Lotus japonicus HOM05D006504 ORTHO05D007867 6.6e-28 127.1 87 72.4
FAN09G0296 Fragaria x ananassa HOM05D006504 ORTHO05D007867 8.6e-28 126.7 87 77.0
Aqoxy5G00309 Aquilegia oxysepala HOM05D006504 ORTHO05D007867 1.1e-27 126.3 85 74.1
Thecc.06G112500 Theobroma cacao HOM05D006504 ORTHO05D007867 1.5e-27 125.9 87 72.4
THA.LOC104822636 Tarenaya hassleriana HOM05D006504 ORTHO05D007867 1.9e-27 125.6 87 72.4
AL1G63070 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 2.5e-27 125.2 87 71.3
Ciclev10026403m.g Citrus clementina HOM05D006504 ORTHO05D007867 2.5e-27 125.2 87 73.6
FAN02G0681 Fragaria x ananassa HOM05D006504 ORTHO05D007867 3.3e-27 124.8 87 77.0
TPR.G37598 Trifolium pratense HOM05D006504 ORTHO05D007867 4.3e-27 124.4 87 71.3
Lj5A44T119 Lonicera japonica HOM05D006504 ORTHO05D007867 5.6e-27 124.0 85 74.1
Ah.08g216230 Amaranthus hybridus HOM05D006504 ORTHO05D007867 9.5e-27 123.2 87 70.1
Gorai.011G064600 Gossypium raimondii HOM05D006504 ORTHO05D007867 9.5e-27 123.2 87 71.3
Eucgr.F03135 Eucalyptus grandis HOM05D006504 ORTHO05D007867 1.2e-26 122.9 87 70.1
Gohir.D10G060350 Gossypium hirsutum HOM05D006504 ORTHO05D007867 1.2e-26 122.9 87 71.3
FAN21G2275 Fragaria x ananassa HOM05D006504 ORTHO05D007867 1.6e-26 122.5 87 74.7
Carub.0001s4357 Capsella rubella HOM05D006504 ORTHO05D007867 2.1e-26 122.1 87 69.0
Sp1g40740 Schrenkiella parvula HOM05D006504 ORTHO05D007867 3.6e-26 121.3 87 69.0
AT1G55080 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 8.1e-26 120.2 85 69.4
Lsat_1_v5_gn_5_135100 Lactuca sativa HOM05D006504 ORTHO05D007867 3.1e-25 118.2 85 68.2
BcaB04g17003 Brassica carinata HOM05D006504 ORTHO05D007867 6.8e-25 117.1 88 68.2
BraA08t32155Z Brassica rapa HOM05D006504 ORTHO05D007867 8.9e-25 116.7 88 68.2
CARHR044670 Cardamine hirsuta HOM05D006504 ORTHO05D007867 1.2e-24 116.3 87 65.5
PSO210G6889 Papaver somniferum HOM05D006504 ORTHO05D007867 1.2e-24 116.3 82 70.7
MSTRG.22579 Avicennia marina HOM05D006504 ORTHO05D007867 1.5e-24 115.9 85 68.2
PGSC0003DMG400021202 Solanum tuberosum HOM05D006504 ORTHO05D007867 2.6e-24 115.2 85 69.4
BolC3t21536H Brassica oleracea HOM05D006504 ORTHO05D007867 3.4e-24 114.8 88 67.0
HanXRQChr12g0360501 Helianthus annuus HOM05D006504 ORTHO05D007867 3.4e-24 114.8 85 67.1
CAN.G675.25 Capsicum annuum HOM05D006504 ORTHO05D007867 4.4e-24 114.4 85 69.4
PSO210G7829 Papaver somniferum HOM05D006504 ORTHO05D007867 4.4e-24 114.4 82 69.5
ATR0661G108 Amborella trichopoda HOM05D006504 ORTHO05D007867 5.8e-24 114.0 85 68.2
BcaC01g01455 Brassica carinata HOM05D006504 ORTHO05D007867 7.5e-24 113.6 88 65.9
ECA234G1551 Erigeron canadensis HOM05D000001 ORTHO05D009948 9.9e-24 113.2 85 64.7
HPP92_023833 Vanilla planifolia HOM05D006504 ORTHO05D007867 9.9e-24 113.2 84 63.1
Solyc02g069520.2 Solanum lycopersicum HOM05D006504 ORTHO05D007867 1.3e-23 112.8 85 67.1
Sopen02g018660 Solanum pennellii HOM05D006504 ORTHO05D007867 1.3e-23 112.8 85 67.1
HPP92_023888 Vanilla planifolia HOM05D006504 ORTHO05D007867 2.9e-23 111.7 83 63.9
Peaxi162Scf00195g00313 Petunia axillaris HOM05D006504 ORTHO05D007867 3.7e-23 111.3 85 67.1
arahy.Tifrunner.gnm1.ann1.Y1EG1J Arachis hypogaea HOM05D006504 ORTHO05D007867 6.4e-23 110.5 74 74.3
MD09G1192700 Malus domestica HOM05D006504 ORTHO05D007867 1.4e-22 109.4 68 83.8
QL05p000679 Quercus lobata HOM05D006504 ORTHO05D007867 4.1e-22 107.8 88 70.5
QL05p000687 Quercus lobata HOM05D006504 ORTHO05D007867 4.1e-22 107.8 88 70.5
CDE04G1380 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 3.5e-21 104.8 85 62.4
Migut.I01030 Erythranthe guttata HOM05D006504 ORTHO05D007867 7.8e-21 103.6 85 62.4
Aa31LG10G870 Aethionema arabicum HOM05D006504 ORTHO05D007867 1.3e-20 102.8 114 51.8
Os01g0501000 Oryza sativa ssp. japonica HOM05D006504 ORTHO05D007867 1.7e-20 102.4 85 58.8
MELO3C030574.2 Cucumis melo HOM05D006504 ORTHO05D007867 3.9e-20 101.3 73 72.6
Nn8g38837 Nelumbo nucifera HOM05D006504 ORTHO05D007867 8.6e-20 100.1 67 76.1
Nn5g26799 Nelumbo nucifera HOM05D006504 ORTHO05D007867 1.1e-19 99.8 67 74.6
BolC6t36770H Brassica oleracea HOM05D006504 ORTHO05D007867 5.6e-19 97.4 87 60.9
BcaB03g13872 Brassica carinata HOM05D006504 ORTHO05D007867 9.5e-19 96.7 87 57.5
PGR102G0591 Punica granatum HOM05D006504 ORTHO05D007867 3.6e-18 94.7 89 60.7
ClCG07G013760 Citrullus lanatus HOM05D006504 ORTHO05D007867 6.2e-18 94.0 81 64.2
BraA05t20659Z Brassica rapa HOM05D006504 ORTHO05D007867 1.1e-17 93.2 85 60.0
BcaC06g35444 Brassica carinata HOM05D006504 ORTHO05D007867 1.4e-17 92.8 87 52.9
A08p01030 Brassica napus HOM05D001264 ORTHO05D007867 1.4e-17 92.8 69 69.6
C03p92210 Brassica napus HOM05D001264 ORTHO05D007867 1.4e-17 92.8 69 69.6
C07p16100 Brassica napus HOM05D006504 ORTHO05D007867 1.4e-17 92.8 87 52.9
BolC7t42095H Brassica oleracea HOM05D006504 ORTHO05D007867 1.4e-17 92.8 87 52.9
Haze_15959 Corylus avellana HOM05D006504 ORTHO05D007867 3.1e-17 91.7 48 93.8
ATR0800G060 Amborella trichopoda HOM05D006504 ORTHO05D007867 8.9e-17 90.1 67 67.2
Carub.0001s2784 Capsella rubella HOM05D006504 ORTHO05D007867 8.9e-17 90.1 87 55.2
A07p10460 Brassica napus HOM05D006504 ORTHO05D007867 3.4e-16 88.2 83 50.6
BraA07t28846Z Brassica rapa HOM05D006504 ORTHO05D007867 3.4e-16 88.2 83 50.6
Rhsim12G0206400 Rhododendron simsii HOM05D006504 ORTHO05D007867 5.8e-16 87.4 100 53.0
SEGI_28258 Sequoiadendron giganteum HOM05D006504 ORTHO05D007867 4.9e-15 84.3 84 54.8
CDE06G0601 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 4.2e-14 81.3 68 60.3
A05p17670 Brassica napus HOM05D006504 ORTHO05D007867 6.0e-13 77.4 68 63.2
Mapoly0004s0244 Marchantia polymorpha HOM05D006504 ORTHO05D007867 7.8e-13 77.0 85 45.9
TPR.G19289 Trifolium pratense HOM05D006504 ORTHO05D007867 7.8e-13 77.0 87 51.7
BcaC08g44177 Brassica carinata HOM05D001264 ORTHO05D001167 1.0e-12 76.6 68 63.2
C06p15780 Brassica napus HOM05D001264 ORTHO05D001167 1.0e-12 76.6 68 63.2
Nitab4.5_0001219g0120 Nicotiana tabacum HOM05D006504 ORTHO05D007867 5.6e-11 70.9 85 51.8
Thhalv10022201m.g Eutrema salsugineum HOM05D006504 ORTHO05D007867 7.3e-11 70.5 68 58.8
vmacro17023 Vaccinium macrocarpon HOM05D006504 ORTHO05D007867 9.6e-11 70.1 50 64.0
Sp3g12060 Schrenkiella parvula HOM05D006504 ORTHO05D007867 2.8e-10 68.6 68 55.9
DCAR_007625 Daucus carota HOM05D006504 ORTHO05D007867 4.0e-09 64.7 85 43.5
AL1G43430 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 6.9e-09 63.9 87 42.5
Gohir.A10G058600 Gossypium hirsutum HOM05D006504 ORTHO05D007867 1.5e-08 62.8 54 57.4
Phvul.010G138400 Phaseolus vulgaris HOM05D006504 ORTHO05D007867 2.0e-08 62.4 39 79.5
SMO358G0601 Selaginella moellendorffii HOM05D006504 ORTHO05D007867 2.6e-08 62.0 79 43.0
Zm00001eb066180 Zea mays HOM05D006504 ORTHO05D007867 9.9e-08 60.1 85 41.2
SGA_v2.0_scaffold127G34055 Striga asiatica HOM05D006504 ORTHO05D007867 2.2e-07 58.9 67 52.2
AT1G29580 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 8.4e-07 57.0 87 42.5


User provided reference genes

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