Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003579 Carpinus fangiana HOM05D007812 ORTHO05D009912 8.0e-20 99.8 62 100.0
CiPaw.02G139600 Carya illinoinensis HOM05D007812 ORTHO05D009912 4.4e-18 94.0 61 90.2
Haze_15960 Corylus avellana HOM05D007812 ORTHO05D009912 6.0e-15 83.6 61 83.6
MBI01_g09945_MAGBIO Magnolia biondii HOM05D007812 ORTHO05D009912 5.6e-13 77.0 63 77.8
Cpa.g.sc25.43 Carica papaya HOM05D007812 ORTHO05D009912 1.2e-12 75.9 62 75.8
PGR102G2903 Punica granatum HOM05D007812 ORTHO05D009912 1.2e-12 75.9 62 74.2
CSS0045617 Camellia sinensis var. sinensis HOM05D007812 ORTHO05D009912 2.1e-12 75.1 51 90.2
Hma1.2p1_0496F.1_g165840 Hydrangea macrophylla HOM05D007812 ORTHO05D009912 2.8e-12 74.7 62 77.4
Manes.11G025800 Manihot esculenta HOM05D007812 ORTHO05D009912 4.7e-12 73.9 61 75.4
Atru.chr1.3756 Acer truncatum HOM05D007812 ORTHO05D009912 8.1e-12 73.2 62 71.0
PSO210G6368 Papaver somniferum HOM05D007812 ORTHO05D009912 1.1e-11 72.8 61 72.1
BcaB06g25431 Brassica carinata HOM05D007812 ORTHO05D009912 1.4e-11 72.4 63 76.2
A05p35560 Brassica napus HOM05D007812 ORTHO05D009912 1.4e-11 72.4 63 76.2
C05p53950 Brassica napus HOM05D007812 ORTHO05D009912 1.4e-11 72.4 63 76.2
BolC5t34061H Brassica oleracea HOM05D007812 ORTHO05D009912 1.4e-11 72.4 63 76.2
BraA05t22365Z Brassica rapa HOM05D007812 ORTHO05D009912 1.4e-11 72.4 63 76.2
Carub.0003s1338 Capsella rubella HOM05D007812 ORTHO05D009912 2.3e-11 71.6 64 75.0
TPR.G19291 Trifolium pratense HOM05D007812 ORTHO05D009912 2.3e-11 71.6 62 75.8
Potri.001G196150 Populus trichocarpa HOM05D007812 ORTHO05D009912 3.1e-11 71.2 61 75.4
Zm00001eb270650 Zea mays HOM05D007812 ORTHO05D009912 3.1e-11 71.2 61 75.4
Sabra03G0024000 Salix brachista HOM05D007812 ORTHO05D009912 4.0e-11 70.9 61 73.8
Thhalv10021887m.g Eutrema salsugineum HOM05D007812 ORTHO05D009912 5.2e-11 70.5 63 74.6
Sp3g12050 Schrenkiella parvula HOM05D007812 ORTHO05D009912 6.8e-11 70.1 59 72.9
Aa31LG10G880 Aethionema arabicum HOM05D007812 ORTHO05D009912 8.9e-11 69.7 61 72.1
CARHR088620 Cardamine hirsuta HOM05D007812 ORTHO05D009912 2.0e-10 68.6 62 69.4
Eucgr.J02853 Eucalyptus grandis HOM05D007812 ORTHO05D009912 4.4e-10 67.4 61 68.9
CDE06G1846 Ceratophyllum demersum HOM05D007812 ORTHO05D009912 5.8e-10 67.0 61 72.1
DCAR_016154 Daucus carota HOM05D007812 ORTHO05D009912 5.8e-10 67.0 63 69.8
Lj3g0001021 Lotus japonicus HOM05D007812 ORTHO05D009912 5.8e-10 67.0 62 71.0
Lalb_Chr04g0263241 Lupinus albus HOM05D007812 ORTHO05D009912 2.2e-09 65.1 62 71.0
Migut.D00965 Erythranthe guttata HOM05D007812 ORTHO05D009912 2.9e-09 64.7 63 69.8
Medtr8g017190 Medicago truncatula HOM05D007812 ORTHO05D009912 2.9e-09 64.7 62 69.4
Potri.003G037100 Populus trichocarpa HOM05D007812 ORTHO05D009912 3.7e-09 64.3 61 72.1
SalBow7G0845 Salvia bowleyana HOM05D007812 ORTHO05D009912 4.9e-09 63.9 60 70.0
arahy.Tifrunner.gnm1.ann1.4U9STT Arachis hypogaea HOM05D007812 ORTHO05D009912 8.3e-09 63.2 60 70.0
COL.COLO4_30669 Corchorus olitorius HOM05D007812 ORTHO05D009912 8.3e-09 63.2 62 67.7
QL05p012120 Quercus lobata HOM05D007812 ORTHO05D009912 8.3e-09 63.2 42 90.5
ECA247G3511 Erigeron canadensis HOM05D007812 ORTHO05D009912 1.4e-08 62.4 50 76.0
RcHm_v2.0_Chr2g0143441 Rosa chinensis HOM05D007812 ORTHO05D009912 2.4e-08 61.6 43 79.1
Psat4g188240 Pisum sativum HOM05D007812 ORTHO05D009912 4.1e-08 60.8 62 64.5
Nitab4.5_0000174g0150 Nicotiana tabacum HOM05D007812 ORTHO05D009912 5.4e-08 60.5 63 63.5
Nitab4.5_0001087g0010 Nicotiana tabacum HOM05D007812 ORTHO05D009912 5.4e-08 60.5 63 63.5
Ah.03g142930 Amaranthus hybridus HOM05D007812 ORTHO05D009912 7.1e-08 60.1 60 61.7
arahy.Tifrunner.gnm1.ann1.B0MA7N Arachis hypogaea HOM05D007812 ORTHO05D009912 7.1e-08 60.1 42 83.3
Phvul.010G138300 Phaseolus vulgaris HOM05D007812 ORTHO05D009912 7.1e-08 60.1 62 64.5
ATR0716G008 Amborella trichopoda HOM05D007812 ORTHO05D009912 1.2e-07 59.3 62 64.5
Ca_23324_v3 Cicer arietinum L. HOM05D007812 ORTHO05D009912 1.2e-07 59.3 62 62.9
MD09G1192600 Malus domestica HOM05D007812 ORTHO05D009912 1.2e-07 59.3 50 72.0
Sed0004047 Sechium edule HOM05D007812 ORTHO05D009912 1.2e-07 59.3 41 85.4
arahy.Tifrunner.gnm1.ann1.X39S4K Arachis hypogaea HOM05D007812 ORTHO05D009912 1.6e-07 58.9 60 66.7
Cc04_g01890 Coffea canephora HOM05D007812 ORTHO05D009912 1.6e-07 58.9 62 64.5
Ah.08g216270 Amaranthus hybridus HOM05D007812 ORTHO05D009912 2.1e-07 58.5 62 64.5
AL3G25990 Arabidopsis lyrata HOM05D007812 ORTHO05D009912 2.1e-07 58.5 64 65.6
AT3G13845 Arabidopsis thaliana HOM05D007812 ORTHO05D009912 2.1e-07 58.5 64 65.6
FAN09G2870 Fragaria x ananassa HOM05D007812 ORTHO05D009912 2.1e-07 58.5 42 78.6
TWI31G1317 Tripterygium wilfordii HOM05D007812 ORTHO05D009912 2.1e-07 58.5 61 63.9
PGSC0003DMG400004846 Solanum tuberosum HOM05D007812 ORTHO05D009912 2.7e-07 58.2 61 57.4
THA.LOC104822637 Tarenaya hassleriana HOM05D007812 ORTHO05D009912 2.7e-07 58.2 59 64.4
Nitab4.5_0000255g0170 Nicotiana tabacum HOM05D007812 ORTHO05D009912 6.0e-07 57.0 62 62.9
CsaV3_7G034750 Cucumis sativus L. HOM05D007812 ORTHO05D009912 7.8e-07 56.6 36 86.1
ClCG09G000730 Citrullus lanatus HOM05D007812 ORTHO05D009912 1.0e-06 56.2 36 83.3
Sopen04g026470 Solanum pennellii HOM05D007812 ORTHO05D009912 1.3e-06 55.8 38 78.9
Gohir.A05G135100 Gossypium hirsutum HOM05D007812 ORTHO05D009912 1.7e-06 55.5 37 83.8
Gohir.D05G137100 Gossypium hirsutum HOM05D007812 ORTHO05D009912 1.7e-06 55.5 37 83.8
Gorai.009G141500 Gossypium raimondii HOM05D007812 ORTHO05D009912 1.7e-06 55.5 37 83.8
Sc15g0000160 Simmondsia chinensis HOM05D007812 ORTHO05D009912 2.3e-06 55.1 62 61.3
Thecc.06G112400 Theobroma cacao HOM05D007812 ORTHO05D009912 3.0e-06 54.7 36 80.6
CAN.G825.36 Capsicum annuum HOM05D007812 ORTHO05D009912 5.1e-06 53.9 60 60.0
PGSC0003DMG400024854 Solanum tuberosum HOM05D007812 ORTHO05D009912 5.1e-06 53.9 58 60.3
CAN.G1040.8 Capsicum annuum HOM05D007812 ORTHO05D009912 6.6e-06 53.5 38 76.3


User provided reference genes

Program Settings