Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003571 Carpinus fangiana HOM05D007444 ORTHO05D009359 4.8e-132 474.9 285 100.0
Haze_15975 Corylus avellana HOM05D007444 ORTHO05D009359 9.0e-123 444.1 286 92.3
CiPaw.02G139200 Carya illinoinensis HOM05D007444 ORTHO05D009359 1.2e-74 284.3 266 58.6
QL05p011272 Quercus lobata HOM05D007444 ORTHO05D009359 9.8e-69 264.6 272 58.8
QL05p011652 Quercus lobata HOM05D007444 ORTHO05D009359 2.2e-68 263.5 276 62.3
FAN14G4700 Fragaria x ananassa HOM05D007444 ORTHO05D009359 1.6e-66 257.3 285 55.8
FAN09G3948 Fragaria x ananassa HOM05D007444 ORTHO05D009359 1.7e-65 253.8 285 54.7
RcHm_v2.0_Chr2g0143591 Rosa chinensis HOM05D007444 ORTHO05D009359 3.6e-63 246.1 272 56.2
FvH4_6g33680 Fragaria vesca HOM05D007444 ORTHO05D009359 3.0e-62 243.0 268 55.6
QL05p010974 Quercus lobata HOM05D007444 ORTHO05D009359 7.8e-58 228.4 184 64.1
MD09G1191700 Malus domestica HOM05D007444 ORTHO05D009359 3.9e-57 226.1 283 47.0
Prupe.3G047900 Prunus persica HOM05D007444 ORTHO05D009359 3.3e-56 223.0 278 50.4
Duzib235G0092 Durio zibethinus HOM05D007444 ORTHO05D009359 5.8e-53 212.2 272 45.2
Ciclev10026127m.g Citrus clementina HOM05D007444 ORTHO05D009359 5.4e-51 205.7 289 49.1
Gohir.A06G190400 Gossypium hirsutum HOM05D007444 ORTHO05D009359 4.6e-50 202.6 292 53.4
Manes.11G025100 Manihot esculenta HOM05D007444 ORTHO05D009359 2.3e-49 200.3 274 50.0
Gohir.D06G198800 Gossypium hirsutum HOM05D007444 ORTHO05D009359 8.6e-49 198.4 251 55.4
PGR119G0376 Punica granatum HOM05D007444 ORTHO05D009359 4.3e-48 196.1 182 54.4
COL.COLO4_30661 Corchorus olitorius HOM05D007444 ORTHO05D009359 5.6e-48 195.7 180 52.8
Gorai.010G231700 Gossypium raimondii HOM05D007444 ORTHO05D009359 1.2e-47 194.5 287 50.9
Eucgr.F03140 Eucalyptus grandis HOM05D007444 ORTHO05D009359 4.7e-47 192.6 289 41.2
CSS0030092 Camellia sinensis var. sinensis HOM05D007444 ORTHO05D009359 6.2e-47 192.2 275 44.4
Sed0011511 Sechium edule HOM05D007444 ORTHO05D009359 1.4e-46 191.0 286 41.3
TWI36G0277 Tripterygium wilfordii HOM05D007444 ORTHO05D009359 2.3e-46 190.3 254 50.0
TWI36G1725 Tripterygium wilfordii HOM05D007444 ORTHO05D009359 2.3e-46 190.3 254 50.0
Actinidia09035 Actinidia chinensis HOM05D007444 ORTHO05D009359 2.6e-45 186.8 280 41.1
Lj9A520T86 Lonicera japonica HOM05D007444 ORTHO05D009359 3.4e-45 186.4 279 42.3
Oeu039953.1 Olea europaea HOM05D007444 ORTHO05D009359 4.4e-45 186.0 301 44.5
CANSAT56G0761 Cannabis sativa HOM05D007444 ORTHO05D009359 2.9e-44 183.3 180 52.8
Hund20831 Selenicereus undatus HOM05D007444 ORTHO05D009359 8.3e-44 181.8 278 44.2
Potri.001G196700 Populus trichocarpa HOM05D007444 ORTHO05D009359 1.9e-43 180.6 285 41.4
MELO3C013088.2 Cucumis melo HOM05D007444 ORTHO05D009359 3.2e-43 179.9 287 47.7
GSVIVG01016873001 Vitis vinifera HOM05D007444 ORTHO05D009359 3.2e-43 179.9 260 47.3
Glyma.15G024900 Glycine max HOM05D007444 ORTHO05D009359 7.1e-43 178.7 261 43.7
Nitab4.5_0000255g0240 Nicotiana tabacum HOM05D007444 ORTHO05D009359 7.1e-43 178.7 260 42.7
Nitab4.5_0005918g0020 Nicotiana tabacum HOM05D007444 ORTHO05D009359 1.2e-42 177.9 299 42.5
Ca_01210_v3 Cicer arietinum L. HOM05D007444 ORTHO05D009359 2.1e-42 177.2 267 40.8
CsaV3_3G043760 Cucumis sativus L. HOM05D007444 ORTHO05D009359 2.7e-42 176.8 287 39.0
Medtr2g099820 Medicago truncatula HOM05D007444 ORTHO05D009359 1.0e-41 174.9 259 39.0
vmacro17027 Vaccinium macrocarpon HOM05D007444 ORTHO05D009359 1.3e-41 174.5 277 39.4
Phvul.005G158200 Phaseolus vulgaris HOM05D007444 ORTHO05D009359 8.6e-41 171.8 261 40.6
Carub.0003s1330 Capsella rubella HOM05D007444 ORTHO05D009359 2.5e-40 170.2 180 48.3
TAR383G0129 Trochodendron aralioides HOM05D007444 ORTHO05D009359 3.3e-40 169.9 314 37.9
AL3G25850 Arabidopsis lyrata HOM05D007444 ORTHO05D009359 7.3e-40 168.7 286 40.6
Cc04_g01830 Coffea canephora HOM05D007444 ORTHO05D009359 7.3e-40 168.7 286 37.8
Psat5g292040 Pisum sativum HOM05D007444 ORTHO05D009359 1.2e-39 167.9 267 41.2
AUR62009843 Chenopodium quinoa HOM05D007444 ORTHO05D009359 1.6e-39 167.5 273 37.0
MSTRG.4771 Avicennia marina HOM05D007444 ORTHO05D009359 2.1e-39 167.2 293 39.2
TPR.G6573 Trifolium pratense HOM05D007444 ORTHO05D009359 2.1e-39 167.2 244 40.2
BcaB06g25436 Brassica carinata HOM05D007444 ORTHO05D009359 2.8e-39 166.8 180 47.2
C05p54050 Brassica napus HOM05D007444 ORTHO05D009359 2.8e-39 166.8 180 47.2
BolC5t34070H Brassica oleracea HOM05D007444 ORTHO05D009359 2.8e-39 166.8 180 47.2
DCAR_022704 Daucus carota HOM05D007444 ORTHO05D009359 2.8e-39 166.8 287 49.5
Sc12g0010310 Simmondsia chinensis HOM05D007444 ORTHO05D009359 2.8e-39 166.8 244 40.6
Aqoxy7G01186 Aquilegia oxysepala HOM05D007444 ORTHO05D009359 3.6e-39 166.4 303 36.0
A05p35640 Brassica napus HOM05D007444 ORTHO05D009359 3.6e-39 166.4 180 47.8
Lsat_1_v5_gn_1_35640 Lactuca sativa HOM05D007444 ORTHO05D009359 3.6e-39 166.4 296 46.3
Peaxi162Scf00207g00133 Petunia axillaris HOM05D007444 ORTHO05D009359 4.7e-39 166.0 191 42.9
THA.LOC104815643 Tarenaya hassleriana HOM05D007444 ORTHO05D009359 4.7e-39 166.0 292 40.4
Sp3g11980 Schrenkiella parvula HOM05D007444 ORTHO05D009359 8.1e-39 165.2 289 50.2
SGA_v2.0_scaffold68G22914 Striga asiatica HOM05D007444 ORTHO05D009359 8.1e-39 165.2 298 46.3
PSO017G2704 Papaver somniferum HOM05D007444 ORTHO05D009359 1.8e-38 164.1 310 39.0
Sopen06g022180 Solanum pennellii HOM05D007444 ORTHO05D009359 3.1e-38 163.3 270 48.5
Ah.08g216430 Amaranthus hybridus HOM05D007444 ORTHO05D009359 4.0e-38 162.9 277 41.2
PGSC0003DMG400004847 Solanum tuberosum HOM05D007444 ORTHO05D009359 4.0e-38 162.9 269 48.7
BraA05t22371Z Brassica rapa HOM05D007444 ORTHO05D009359 1.2e-37 161.4 287 49.5
Aa31LG8G960 Aethionema arabicum HOM05D007444 ORTHO05D009359 1.5e-37 161.0 180 46.1
AUR62038156 Chenopodium quinoa HOM05D007444 ORTHO05D009359 2.0e-37 160.6 190 44.7
CARHR088510 Cardamine hirsuta HOM05D007444 ORTHO05D009359 4.4e-37 159.5 244 50.0
PSO478G1587 Papaver somniferum HOM05D007444 ORTHO05D009359 7.6e-37 158.7 283 41.0
AT3G13780 Arabidopsis thaliana HOM05D007444 ORTHO05D009359 1.3e-36 157.9 180 45.6
CAN.G825.32 Capsicum annuum HOM05D007444 ORTHO05D009359 1.3e-36 157.9 275 47.3
Migut.D00964 Erythranthe guttata HOM05D007444 ORTHO05D009359 1.7e-36 157.5 291 43.0
ClCG07G013830 Citrullus lanatus HOM05D007444 ORTHO05D009359 1.4e-35 154.5 298 35.2
Lalb_Chr14g0372751 Lupinus albus HOM05D007444 ORTHO05D009359 3.2e-35 153.3 275 36.7
Thhalv10021210m.g Eutrema salsugineum HOM05D007444 ORTHO05D009359 5.4e-35 152.5 287 46.3
Sabra01G0143200 Salix brachista HOM05D007444 ORTHO05D009359 5.4e-35 152.5 178 47.2
EL10Ac7g16359 Beta vulgaris HOM05D007444 ORTHO05D009359 9.2e-35 151.8 270 43.7
arahy.Tifrunner.gnm1.ann1.ZV36U3 Arachis hypogaea HOM05D007444 ORTHO05D009359 1.7e-33 147.5 183 45.4
MBI01_g20340_MAGBIO Magnolia biondii HOM05D007444 ORTHO05D009359 1.7e-33 147.5 335 34.6
arahy.Tifrunner.gnm1.ann1.F397YD Arachis hypogaea HOM05D007444 ORTHO05D009359 2.3e-33 147.1 183 45.4
Lj3g0023369 Lotus japonicus HOM05D007444 ORTHO05D009359 2.3e-33 147.1 271 44.6
SalBow7G2527 Salvia bowleyana HOM05D007444 ORTHO05D009359 6.6e-33 145.6 293 42.7
HanXRQChr02g0031731 Helianthus annuus HOM05D007444 ORTHO05D009359 5.2e-30 136.0 286 44.1
HPP92_005228 Vanilla planifolia HOM05D007444 ORTHO05D009359 6.8e-30 135.6 320 32.2
CDE05G3416 Ceratophyllum demersum HOM05D007444 ORTHO05D009359 4.4e-29 132.9 310 33.5
Dinv37906 Davidia involucrata HOM05D007444 ORTHO05D009359 5.8e-29 132.5 162 45.7
Rhsim12G0206600 Rhododendron simsii HOM05D007444 ORTHO05D009359 2.4e-27 127.1 157 45.9
Zm00001eb277400 Zea mays HOM05D007444 ORTHO05D009359 1.2e-26 124.8 303 38.3
Cpa.g.sc25.50 Carica papaya HOM05D007444 ORTHO05D009359 3.6e-23 113.2 178 39.3
Solyc06g062700.3 Solanum lycopersicum HOM05D007444 ORTHO05D009359 1.8e-22 110.9 155 41.3
Hma1.2p1_0496F.1_g165930 Hydrangea macrophylla HOM05D007444 ORTHO05D009359 1.3e-15 88.2 102 45.1
ECA247G2926 Erigeron canadensis HOM05D000045 ORTHO05D000067 4.0e-14 83.2 91 47.3
SEGI_13370 Sequoiadendron giganteum HOM05D007444 ORTHO05D009359 2.2e-12 77.4 176 31.2
ATR0109G024 Amborella trichopoda HOM05D007444 ORTHO05D009359 7.1e-11 72.4 122 36.9
QL05p011362 Quercus lobata HOM05D007444 ORTHO05D009359 1.8e-09 67.8 119 56.3
Pp3c14_13390 Physcomitrium patens HOM05D007444 ORTHO05D009359 2.1e-07 60.8 116 33.6
Mapoly0028s0047 Marchantia polymorpha HOM05D007444 ORTHO05D009359 2.4e-06 57.4 121 30.6
QL05p010901 Quercus lobata HOM05D007444 ORTHO05D009359 4.0e-06 56.6 61 60.7


User provided reference genes

Program Settings