Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003566 Carpinus fangiana HOM05D006233 ORTHO05D007247 1.8e-78 295.8 147 100.0
Haze_15979 Corylus avellana HOM05D006233 ORTHO05D007247 2.8e-71 271.9 169 82.8
CiPaw.01G223500 Carya illinoinensis HOM05D006233 ORTHO05D007247 6.9e-62 240.7 147 81.6
CiPaw.02G138900 Carya illinoinensis HOM05D006233 ORTHO05D007247 4.2e-59 231.5 147 79.6
MD09G1191200 Malus domestica HOM05D006233 ORTHO05D007247 4.6e-58 228.0 147 77.6
Prupe.3G047000 Prunus persica HOM05D006233 ORTHO05D007247 1.0e-57 226.9 147 76.9
MD17G1173900 Malus domestica HOM05D006233 ORTHO05D007247 2.3e-57 225.7 147 78.9
FAN09G3309 Fragaria x ananassa HOM05D006233 ORTHO05D007247 2.5e-56 222.2 149 76.5
FvH4_6g33800 Fragaria vesca HOM05D006233 ORTHO05D007247 4.3e-56 221.5 149 76.5
FAN14G4045 Fragaria x ananassa HOM05D006233 ORTHO05D007247 4.3e-56 221.5 149 76.5
Manes.11G024800 Manihot esculenta HOM05D006233 ORTHO05D007247 1.7e-55 219.5 148 77.0
RcHm_v2.0_Chr2g0143671 Rosa chinensis HOM05D006233 ORTHO05D007247 3.7e-55 218.4 149 76.5
FAN05G2224 Fragaria x ananassa HOM05D006233 ORTHO05D007247 1.4e-54 216.5 149 75.2
Manes.04G140700 Manihot esculenta HOM05D006233 ORTHO05D007247 4.1e-54 214.9 148 75.7
Hma1.2p1_1128F.1_g259780 Hydrangea macrophylla HOM05D006233 ORTHO05D007247 1.9e-51 206.1 149 70.5
CANSAT56G1839 Cannabis sativa HOM05D006233 ORTHO05D007247 2.5e-51 205.7 149 71.8
Actinidia26050 Actinidia chinensis HOM05D006233 ORTHO05D007247 2.7e-50 202.2 148 71.6
Thecc.06G113700 Theobroma cacao HOM05D006233 ORTHO05D007247 4.4e-48 194.9 147 70.1
Aqoxy7G01184 Aquilegia oxysepala HOM05D006233 ORTHO05D007247 2.2e-47 192.6 145 64.1
Dinv04018 Davidia involucrata HOM05D006233 ORTHO05D007247 2.2e-47 192.6 146 71.2
TWI63G1789 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 1.1e-46 190.3 147 68.0
CsaV3_3G043640 Cucumis sativus L. HOM05D006233 ORTHO05D007247 1.4e-46 189.9 149 67.1
TWI38G0279 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 1.4e-46 189.9 147 68.0
Actinidia39105 Actinidia chinensis HOM05D006233 ORTHO05D007247 9.1e-46 187.2 150 64.7
Atru.chr1.3781 Acer truncatum HOM05D006233 ORTHO05D007247 1.2e-45 186.8 148 68.2
MELO3C013069.2 Cucumis melo HOM05D006233 ORTHO05D007247 2.0e-45 186.0 149 65.8
Dinv37902 Davidia involucrata HOM05D006233 ORTHO05D007247 2.0e-45 186.0 146 70.5
Gohir.D06G199600 Gossypium hirsutum HOM05D006233 ORTHO05D007247 2.0e-45 186.0 147 65.3
Gorai.010G232600 Gossypium raimondii HOM05D006233 ORTHO05D007247 2.6e-45 185.7 147 65.3
Cpa.g.sc25.68 Carica papaya HOM05D006233 ORTHO05D007247 3.4e-45 185.3 148 68.2
Gohir.A06G191200 Gossypium hirsutum HOM05D006233 ORTHO05D007247 4.5e-45 184.9 147 64.6
Lj5A43T71 Lonicera japonica HOM05D006233 ORTHO05D007247 5.9e-45 184.5 160 65.0
ClCG07G013950 Citrullus lanatus HOM05D006233 ORTHO05D007247 1.0e-44 183.7 141 66.7
Sed0001061 Sechium edule HOM05D006233 ORTHO05D007247 1.3e-44 183.3 150 67.3
Nn6g35511 Nelumbo nucifera HOM05D006233 ORTHO05D007247 1.7e-44 183.0 145 66.9
GSVIVG01016799001 Vitis vinifera HOM05D006233 ORTHO05D007247 1.7e-44 183.0 150 63.3
arahy.Tifrunner.gnm1.ann1.LDN3BT Arachis hypogaea HOM05D006233 ORTHO05D007247 5.0e-44 181.4 147 67.3
COL.COLO4_38606 Corchorus olitorius HOM05D006233 ORTHO05D007247 1.1e-43 180.3 147 66.0
Migut.D00962 Erythranthe guttata HOM05D006233 ORTHO05D007247 9.4e-43 177.2 156 64.7
FAN21G3416 Fragaria x ananassa HOM05D006233 ORTHO05D007247 1.6e-42 176.4 127 70.9
Eucgr.F03142 Eucalyptus grandis HOM05D006233 ORTHO05D007247 3.6e-42 175.3 147 61.2
Ciclev10026736m.g Citrus clementina HOM05D006233 ORTHO05D007247 3.0e-41 172.2 151 63.6
Actinidia32155 Actinidia chinensis HOM05D006233 ORTHO05D007247 3.9e-41 171.8 149 63.8
AL3G26050 Arabidopsis lyrata HOM05D006233 ORTHO05D007247 6.7e-41 171.0 151 64.2
Cc04_g01780 Coffea canephora HOM05D006233 ORTHO05D007247 1.5e-40 169.9 146 63.7
Ca_23330_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 2.0e-40 169.5 148 64.9
Aa31LG8G1060 Aethionema arabicum HOM05D006233 ORTHO05D007247 2.6e-40 169.1 150 63.3
MSTRG.9502 Avicennia marina HOM05D006233 ORTHO05D007247 5.7e-40 167.9 153 64.7
PGR119G1625 Punica granatum HOM05D006233 ORTHO05D007247 7.4e-40 167.5 150 57.3
AT3G13882 Arabidopsis thaliana HOM05D006233 ORTHO05D007247 9.7e-40 167.2 151 61.6
Lalb_Chr25g0280771 Lupinus albus HOM05D006233 ORTHO05D007247 9.7e-40 167.2 147 61.9
BcaB04g18809 Brassica carinata HOM05D006233 ORTHO05D007247 1.3e-39 166.8 150 59.3
Carub.0003s1344 Capsella rubella HOM05D006233 ORTHO05D007247 1.3e-39 166.8 151 60.3
Medtr8g017420 Medicago truncatula HOM05D006233 ORTHO05D007247 1.7e-39 166.4 148 65.5
PSO210G1065 Papaver somniferum HOM05D006233 ORTHO05D007247 1.7e-39 166.4 148 56.1
Thhalv10021711m.g Eutrema salsugineum HOM05D006233 ORTHO05D007247 2.2e-39 166.0 150 60.7
A03p38490 Brassica napus HOM05D006233 ORTHO05D007247 4.8e-39 164.9 151 60.9
BolC3t16928H Brassica oleracea HOM05D006233 ORTHO05D007247 6.3e-39 164.5 151 60.9
TPR.G3185 Trifolium pratense HOM05D006233 ORTHO05D007247 6.3e-39 164.5 149 64.4
HanXRQChr10g0312401 Helianthus annuus HOM05D006233 ORTHO05D007247 8.2e-39 164.1 152 61.8
Sp3g12110 Schrenkiella parvula HOM05D006233 ORTHO05D007247 8.2e-39 164.1 151 60.3
VMungo0331G0931 Vigna mungo HOM05D006233 ORTHO05D007247 8.2e-39 164.1 147 61.9
BcaB06g25428 Brassica carinata HOM05D006233 ORTHO05D007247 1.1e-38 163.7 150 60.0
BcaC05g29149 Brassica carinata HOM05D006233 ORTHO05D007247 1.1e-38 163.7 150 60.7
C05p53920 Brassica napus HOM05D006233 ORTHO05D007247 1.1e-38 163.7 150 60.7
CARHR088680 Cardamine hirsuta HOM05D006233 ORTHO05D007247 1.8e-38 162.9 152 61.8
BcaC01g03969 Brassica carinata HOM05D006233 ORTHO05D007247 2.4e-38 162.5 151 60.3
C03p46650 Brassica napus HOM05D006233 ORTHO05D007247 2.4e-38 162.5 151 60.3
BraA03t12999Z Brassica rapa HOM05D006233 ORTHO05D007247 2.0e-37 159.5 155 61.3
Psat4g187760 Pisum sativum HOM05D006233 ORTHO05D007247 2.6e-37 159.1 140 64.3
MBI04_g36913_MAGBIO Magnolia biondii HOM05D006233 ORTHO05D007247 4.5e-37 158.3 150 60.0
BraA03t13001Z Brassica rapa HOM05D006233 ORTHO05D007247 7.7e-37 157.5 152 59.9
PSO210G5036 Papaver somniferum HOM05D006233 ORTHO05D007247 1.0e-36 157.1 145 55.9
Phvul.010G137600 Phaseolus vulgaris HOM05D006233 ORTHO05D007247 1.7e-36 156.4 147 61.9
Duzib192G0098 Durio zibethinus HOM05D006233 ORTHO05D007247 2.9e-36 155.6 123 61.8
SGA_v2.0_scaffold4G02044 Striga asiatica HOM05D006233 ORTHO05D007247 5.0e-36 154.8 150 60.0
Glyma.07G008600 Glycine max HOM05D006233 ORTHO05D007247 6.5e-36 154.5 142 59.9
THA.LOC104822640 Tarenaya hassleriana HOM05D006233 ORTHO05D007247 8.5e-36 154.1 172 53.5
Solyc06g062760.3 Solanum lycopersicum HOM05D006233 ORTHO05D007247 1.5e-35 153.3 149 61.1
ECA234G2580 Erigeron canadensis HOM05D006233 ORTHO05D007247 1.9e-35 152.9 153 58.8
Rhsim08G0234900 Rhododendron simsii HOM05D006233 ORTHO05D007247 1.9e-35 152.9 131 60.3
Glyma.08G191600 Glycine max HOM05D006233 ORTHO05D007247 3.2e-35 152.1 143 60.1
Potri.003G041100 Populus trichocarpa HOM05D006233 ORTHO05D007247 3.2e-35 152.1 152 59.2
PGSC0003DMG400004851 Solanum tuberosum HOM05D006233 ORTHO05D007247 3.2e-35 152.1 149 62.4
CDE03G0127 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 5.5e-35 151.4 148 59.5
FAN11G2894 Fragaria x ananassa HOM05D000283 ORTHO05D007247 9.4e-35 150.6 143 59.4
Peaxi162Scf00207g01343 Petunia axillaris HOM05D006233 ORTHO05D007247 9.4e-35 150.6 153 57.5
Nitab4.5_0005918g0010 Nicotiana tabacum HOM05D006233 ORTHO05D007247 1.2e-34 150.2 149 60.4
Sopen06g022210 Solanum pennellii HOM05D006233 ORTHO05D007247 1.2e-34 150.2 149 61.1
EL10Ac7g16362 Beta vulgaris HOM05D006233 ORTHO05D007247 2.7e-34 149.1 161 52.2
Nitab4.5_0000255g0250 Nicotiana tabacum HOM05D006233 ORTHO05D007247 2.7e-34 149.1 147 60.5
Lj5A42T58 Lonicera japonica HOM05D006233 ORTHO05D007247 4.7e-34 148.3 134 61.9
AUR62038159 Chenopodium quinoa HOM05D006233 ORTHO05D007247 4.0e-33 145.2 161 52.8
Lj5g0016703 Lotus japonicus HOM05D006233 ORTHO05D007247 5.2e-33 144.8 157 56.1
arahy.Tifrunner.gnm1.ann1.9P6A99 Arachis hypogaea HOM05D006233 ORTHO05D007247 1.2e-32 143.7 123 61.0
AUR62009846 Chenopodium quinoa HOM05D006233 ORTHO05D007247 1.5e-32 143.3 158 52.5
BolC5t34058H Brassica oleracea HOM05D006233 ORTHO05D007247 1.4e-30 136.7 158 51.3
Hund20828 Selenicereus undatus HOM05D006233 ORTHO05D007247 5.3e-30 134.8 167 51.5
HanXRQChr04g0094941 Helianthus annuus HOM05D006233 ORTHO05D007247 9.1e-30 134.0 146 57.5
QL05p010144 Quercus lobata HOM05D006233 ORTHO05D007247 7.7e-29 131.0 92 71.7
QL05p010226 Quercus lobata HOM05D006233 ORTHO05D007247 6.5e-28 127.9 93 69.9
Lsat_1_v5_gn_5_135041 Lactuca sativa HOM05D006233 ORTHO05D007247 1.6e-26 123.2 124 54.8
Nn8g38812 Nelumbo nucifera HOM05D006233 ORTHO05D007247 1.0e-25 120.6 135 51.9
RcHm_v2.0_Chr5g0063721 Rosa chinensis HOM05D006233 ORTHO05D007247 6.8e-25 117.9 97 59.8
SGA_v2.0_scaffold68G22913 Striga asiatica HOM05D006233 ORTHO05D007247 1.2e-24 117.1 128 53.1
A03p38520 Brassica napus HOM05D006233 ORTHO05D007247 2.2e-23 112.8 127 52.8
Os01g0571200 Oryza sativa ssp. japonica HOM05D006233 ORTHO05D007247 2.8e-23 112.5 146 43.2
Zm00001eb160070 Zea mays HOM05D006233 ORTHO05D007247 2.4e-22 109.4 155 43.9
CSS0050466 Camellia sinensis var. sinensis HOM05D006233 ORTHO05D007247 1.0e-20 104.0 92 62.0
ATR0789G010 Amborella trichopoda HOM05D006233 ORTHO05D007247 1.7e-20 103.2 90 61.1
BraA05t22362Z Brassica rapa HOM05D006233 ORTHO05D007247 3.8e-20 102.1 173 41.6
unitig_8.g4463 Utricularia gibba HOM05D006233 ORTHO05D007247 1.1e-19 100.5 130 43.8
vmacro18776 Vaccinium macrocarpon HOM05D006233 ORTHO05D007247 3.6e-18 95.5 97 55.7
CDE06G1672 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 4.7e-18 95.1 117 49.6
Sed0004594 Sechium edule HOM05D006233 ORTHO05D007247 2.2e-15 86.3 92 54.3
HPP92_007656 Vanilla planifolia HOM05D006233 ORTHO05D007247 2.2e-15 86.3 127 43.3
BcaC05g29150 Brassica carinata HOM05D006233 ORTHO05D007247 3.7e-15 85.5 150 44.0
A05p35530 Brassica napus HOM05D006233 ORTHO05D007247 3.1e-14 82.4 92 47.8
FAN25G2302 Fragaria x ananassa HOM05D000283 ORTHO05D000358 3.8e-12 75.5 65 60.0
Pp3c4_29560 Physcomitrium patens HOM05D006233 ORTHO05D007247 8.6e-12 74.3 87 48.3
Zm00001eb357240 Zea mays HOM05D006233 ORTHO05D007247 4.3e-11 72.0 134 36.6
Oeu011882.1 Olea europaea HOM05D006233 ORTHO05D007247 8.0e-10 67.8 95 50.5
SalBow7G1471 Salvia bowleyana HOM05D006233 ORTHO05D007247 8.0e-10 67.8 95 45.3
Sc15g0000290 Simmondsia chinensis HOM05D006233 ORTHO05D007247 8.0e-10 67.8 130 34.6
AagrBONN_evm.TU.Sc2ySwM_368.223 Anthoceros agrestis HOM05D003143 ORTHO05D003628 2.3e-09 66.2 57 57.9
Nn1g01194 Nelumbo nucifera HOM05D006233 ORTHO05D007247 4.0e-09 65.5 50 64.0
Mapoly0016s0011 Marchantia polymorpha HOM05D006233 ORTHO05D007247 3.4e-08 62.4 53 60.4
Ca_29232_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 1.3e-07 60.5 42 69.0
MCO16G417 Micromonas commoda HOM05D003208 ORTHO05D004103 1.7e-07 60.1 58 50.0
CBR_g8600 Chara braunii HOM05D006233 ORTHO05D007247 2.2e-07 59.7 51 56.9
CSS0050070 Camellia sinensis var. sinensis HOM05D041584 ORTHO05D007247 7.0e-06 54.7 33 69.7


User provided reference genes

Program Settings