Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003563 Carpinus fangiana HOM05D003238 ORTHO05D003571 3.3e-33 144.8 94 100.0
Haze_15983 Corylus avellana HOM05D003238 ORTHO05D003571 9.9e-30 133.3 95 95.8
QL05p009982 Quercus lobata HOM05D003238 ORTHO05D003571 1.2e-22 109.8 93 81.7
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 7.6e-22 107.1 92 80.4
CiPaw.01G223100 Carya illinoinensis HOM05D003238 ORTHO05D003571 1.0e-21 106.7 88 86.4
Nn6g35523 Nelumbo nucifera HOM05D003238 ORTHO05D003571 1.3e-21 106.3 92 79.3
Dinv37898 Davidia involucrata HOM05D003238 ORTHO05D003571 2.9e-21 105.1 86 83.7
Haze_25933 Corylus avellana HOM05D003238 ORTHO05D003571 2.1e-19 99.0 93 74.2
Gohir.D10G059800 Gossypium hirsutum HOM05D003238 ORTHO05D003571 2.1e-19 99.0 89 77.5
Gorai.011G063800 Gossypium raimondii HOM05D003238 ORTHO05D003571 2.7e-19 98.6 89 77.5
Thecc.06G114200 Theobroma cacao HOM05D003238 ORTHO05D003571 4.6e-19 97.8 89 79.8
Gohir.A10G058000 Gossypium hirsutum HOM05D003238 ORTHO05D003571 1.0e-18 96.7 89 77.5
Ciclev10026836m.g Citrus clementina HOM05D003238 ORTHO05D003571 1.8e-18 95.9 90 75.6
COL.COLO4_30681 Corchorus olitorius HOM05D003238 ORTHO05D003571 5.1e-18 94.4 89 75.3
Duzib160G0096 Durio zibethinus HOM05D003238 ORTHO05D003571 6.7e-18 94.0 89 75.3
Glyma.08G191200 Glycine max HOM05D003238 ORTHO05D003571 8.7e-18 93.6 90 74.4
Rhsim08G0235200 Rhododendron simsii HOM05D003238 ORTHO05D003571 8.7e-18 93.6 86 76.7
Actinidia39103 Actinidia chinensis HOM05D003238 ORTHO05D003571 1.1e-17 93.2 86 76.7
Glyma.07G008200 Glycine max HOM05D003238 ORTHO05D003571 1.1e-17 93.2 90 74.4
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 1.5e-17 92.8 93 73.1
Dinv36782 Davidia involucrata HOM05D003238 ORTHO05D003571 1.9e-17 92.4 90 74.4
TWI79G0340 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 2.5e-17 92.0 92 71.7
Sed0015805 Sechium edule HOM05D003238 ORTHO05D003571 7.4e-17 90.5 88 73.9
MELO3C024380.2 Cucumis melo HOM05D003238 ORTHO05D003571 9.7e-17 90.1 91 73.6
Phvul.010G137200 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 9.7e-17 90.1 87 73.6
Potri.017G119600 Populus trichocarpa HOM05D003238 ORTHO05D003571 2.2e-16 89.0 90 76.7
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 3.7e-16 88.2 88 71.6
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 8.2e-16 87.0 94 71.3
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 8.2e-16 87.0 89 74.2
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 8.2e-16 87.0 89 74.2
CANSAT56G1439 Cannabis sativa HOM05D003238 ORTHO05D003571 8.2e-16 87.0 92 71.7
CsaV3_7G034700 Cucumis sativus L. HOM05D003238 ORTHO05D003571 8.2e-16 87.0 90 72.2
Prupe.7G206700 Prunus persica HOM05D003238 ORTHO05D003571 8.2e-16 87.0 88 73.9
Manes.11G024400 Manihot esculenta HOM05D003238 ORTHO05D003571 1.1e-15 86.7 89 73.0
Psat4g187480 Pisum sativum HOM05D003238 ORTHO05D003571 1.1e-15 86.7 92 68.5
Lj3g0007714 Lotus japonicus HOM05D003238 ORTHO05D003571 1.4e-15 86.3 82 75.6
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 1.4e-15 86.3 90 73.3
PGR102G1556 Punica granatum HOM05D003238 ORTHO05D003571 1.8e-15 85.9 102 68.6
Aqoxy7G04029 Aquilegia oxysepala HOM05D003238 ORTHO05D003571 2.4e-15 85.5 91 71.4
Cc04_g01740 Coffea canephora HOM05D003238 ORTHO05D003571 2.4e-15 85.5 76 76.3
Nitab4.5_0000255g0290 Nicotiana tabacum HOM05D003238 ORTHO05D003571 2.4e-15 85.5 75 80.0
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 2.4e-15 85.5 92 67.4
PSO210G1081 Papaver somniferum HOM05D003238 ORTHO05D003571 4.1e-15 84.7 88 71.6
MD02G1082200 Malus domestica HOM05D003238 ORTHO05D003571 5.3e-15 84.3 88 68.2
Medtr8g017610 Medicago truncatula HOM05D003238 ORTHO05D003571 1.2e-14 83.2 92 69.6
PSO210G2488 Papaver somniferum HOM05D003238 ORTHO05D003571 1.2e-14 83.2 88 69.3
Actinidia39710 Actinidia chinensis HOM05D003238 ORTHO05D003571 1.5e-14 82.8 87 72.4
THA.LOC109116473 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 1.5e-14 82.8 93 67.7
Nitab4.5_0005918g0030 Nicotiana tabacum HOM05D003238 ORTHO05D003571 2.0e-14 82.4 72 80.6
Atru.chr1.3787 Acer truncatum HOM05D003238 ORTHO05D003571 2.6e-14 82.0 92 68.5
Lalb_Chr04g0263271 Lupinus albus HOM05D003238 ORTHO05D003571 2.6e-14 82.0 92 69.6
Rhsim05G0017200 Rhododendron simsii HOM05D003238 ORTHO05D003571 2.6e-14 82.0 92 67.4
Ca_23334_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 3.4e-14 81.6 88 70.5
ClCG09G000780 Citrullus lanatus HOM05D003238 ORTHO05D003571 5.9e-14 80.9 89 69.7
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 5.9e-14 80.9 89 70.8
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 5.9e-14 80.9 89 67.4
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 5.9e-14 80.9 89 66.3
GSVIVG01016802001 Vitis vinifera HOM05D003238 ORTHO05D003571 7.7e-14 80.5 92 69.6
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla HOM05D003238 ORTHO05D003571 1.0e-13 80.1 77 76.6
Oeu017609.1 Olea europaea HOM05D003238 ORTHO05D003571 1.0e-13 80.1 85 72.9
Potri.004G095300 Populus trichocarpa HOM05D003238 ORTHO05D003571 2.2e-13 79.0 94 51.1
Thecc.09G086100 Theobroma cacao HOM05D003238 ORTHO05D003571 2.2e-13 79.0 93 66.7
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 2.9e-13 78.6 91 63.7
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 3.8e-13 78.2 89 64.0
Sc15g0000270 Simmondsia chinensis HOM05D003238 ORTHO05D003571 3.8e-13 78.2 84 66.7
arahy.Tifrunner.gnm1.ann1.7T9QNI Arachis hypogaea HOM05D003238 ORTHO05D003571 5.0e-13 77.8 86 68.6
MBI04_g36912_MAGBIO Magnolia biondii HOM05D003238 ORTHO05D003571 5.0e-13 77.8 80 71.2
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 6.5e-13 77.4 89 65.2
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 6.5e-13 77.4 89 65.2
TPR.G27679 Trifolium pratense HOM05D003238 ORTHO05D003571 6.5e-13 77.4 88 69.3
Cpa.g.sc25.72 Carica papaya HOM05D003238 ORTHO05D003571 8.5e-13 77.0 61 70.5
Nitab4.5_0006462g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.1e-12 76.6 54 66.7
Nitab4.5_0002824g0070 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.4e-12 76.3 94 64.9
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 1.9e-12 75.9 78 69.2
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 1.9e-12 75.9 91 63.7
vmacro23045 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 3.2e-12 75.1 88 69.3
Sopen06g022220 Solanum pennellii HOM05D003238 ORTHO05D003571 4.2e-12 74.7 79 72.2
DCAR_026391 Daucus carota HOM05D003238 ORTHO05D003571 5.5e-12 74.3 78 71.8
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 5.5e-12 74.3 92 64.1
CiPaw.02G138700 Carya illinoinensis HOM05D003238 ORTHO05D003571 7.2e-12 73.9 67 53.7
Potri.006G148000 Populus trichocarpa HOM05D003238 ORTHO05D003571 9.4e-12 73.6 80 73.8
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 1.6e-11 72.8 92 66.3
Hund20825 Selenicereus undatus HOM05D003238 ORTHO05D003571 1.6e-11 72.8 79 67.1
CARHR065610 Cardamine hirsuta HOM05D003238 ORTHO05D003571 2.1e-11 72.4 91 67.0
Ca_26161_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 2.1e-11 72.4 85 51.8
Duzib168G0217 Durio zibethinus HOM05D003238 ORTHO05D003571 2.1e-11 72.4 91 65.9
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 2.1e-11 72.4 77 72.7
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 2.7e-11 72.0 91 61.5
AUR62009849 Chenopodium quinoa HOM05D003238 ORTHO05D003571 2.7e-11 72.0 85 58.8
Solyc06g062765.1 Solanum lycopersicum HOM05D003238 ORTHO05D003571 2.7e-11 72.0 79 70.9
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 3.6e-11 71.6 80 66.2
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 6.1e-11 70.9 83 67.5
HPP92_007657 Vanilla planifolia HOM05D003238 ORTHO05D003571 6.1e-11 70.9 80 66.2
arahy.Tifrunner.gnm1.ann1.HS5001 Arachis hypogaea HOM05D003238 ORTHO05D003571 1.0e-10 70.1 92 62.0
Manes.16G100500 Manihot esculenta HOM05D003238 ORTHO05D003571 1.0e-10 70.1 79 65.8
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 1.4e-10 69.7 82 47.6
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 2.3e-10 68.9 76 71.1
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 3.0e-10 68.6 83 63.9
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 3.0e-10 68.6 92 58.7
Sed0010916 Sechium edule HOM05D003238 ORTHO05D003571 3.9e-10 68.2 88 45.5
VMungo0720G2789 Vigna mungo HOM05D003238 ORTHO05D003571 3.9e-10 68.2 48 68.8
Carub.0002s1954 Capsella rubella HOM05D003238 ORTHO05D003571 5.1e-10 67.8 82 43.9
CDE05G2517 Ceratophyllum demersum HOM05D003238 ORTHO05D003571 5.1e-10 67.8 96 61.5
Gohir.D07G012200 Gossypium hirsutum HOM05D001717 ORTHO05D007217 6.7e-10 67.4 85 64.7
ATR0789G083 Amborella trichopoda HOM05D003238 ORTHO05D003571 8.8e-10 67.0 87 66.7
Ciclev10009462m.g Citrus clementina HOM05D003238 ORTHO05D003571 8.8e-10 67.0 80 47.5
COL.COLO4_18181 Corchorus olitorius HOM05D003238 ORTHO05D003571 1.1e-09 66.6 73 72.6
Gorai.001G012800 Gossypium raimondii HOM05D003238 ORTHO05D003571 1.1e-09 66.6 80 66.2
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 2.5e-09 65.5 81 43.2
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 2.5e-09 65.5 91 47.3
Sabra06G0117100 Salix brachista HOM05D003238 ORTHO05D003571 2.5e-09 65.5 90 58.9
HPP92_005498 Vanilla planifolia HOM05D003238 ORTHO05D003571 2.5e-09 65.5 51 64.7
MSTRG.4775 Avicennia marina HOM05D003238 ORTHO05D003571 3.3e-09 65.1 74 50.0
ECA247G2422 Erigeron canadensis HOM05D003238 ORTHO05D003571 4.3e-09 64.7 83 68.7
Thhalv10019375m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 4.3e-09 64.7 54 57.4
AT1G72690 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 7.4e-09 63.9 79 65.8
A09p28910 Brassica napus HOM05D003238 ORTHO05D003571 7.4e-09 63.9 51 60.8
C06p34720 Brassica napus HOM05D003238 ORTHO05D003571 7.4e-09 63.9 51 60.8
BraA09t38454Z Brassica rapa HOM05D003238 ORTHO05D003571 7.4e-09 63.9 51 60.8
Aa31LG4G3050 Aethionema arabicum HOM05D003238 ORTHO05D003571 9.7e-09 63.5 80 65.0
AL2G32370 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 9.7e-09 63.5 79 63.3
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 1.3e-08 63.2 90 63.3
Phvul.009G231100 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 1.7e-08 62.8 79 43.0
Prupe.3G046400 Prunus persica HOM05D003238 ORTHO05D003571 1.7e-08 62.8 92 44.6
PGSC0003DMG400004852 Solanum tuberosum HOM05D003238 ORTHO05D003571 2.2e-08 62.4 72 72.2
Glyma.15G170900 Glycine max HOM05D003238 ORTHO05D003571 2.8e-08 62.0 80 50.0
Sp5g27750 Schrenkiella parvula HOM05D003238 ORTHO05D003571 2.8e-08 62.0 50 60.0
Cc00_g10140 Coffea canephora HOM05D001135 ORTHO05D001005 3.7e-08 61.6 49 67.3
Nitab4.5_0009992g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 3.7e-08 61.6 61 54.1
Atru.chr7.1621 Acer truncatum HOM05D003238 ORTHO05D003571 6.3e-08 60.8 58 58.6
EL10Ac7g16367 Beta vulgaris HOM05D003238 ORTHO05D003571 8.2e-08 60.5 46 65.2
BcaB08g36028 Brassica carinata HOM05D003238 ORTHO05D003571 2.4e-07 58.9 113 35.4
A10p14320 Brassica napus HOM05D003238 ORTHO05D003571 2.4e-07 58.9 114 45.6
THA.LOC104813494 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 2.4e-07 58.9 122 35.2
arahy.Tifrunner.gnm1.ann1.57GLQM Arachis hypogaea HOM05D003238 ORTHO05D003571 4.1e-07 58.2 88 45.5
Lalb_Chr08g0232341 Lupinus albus HOM05D003238 ORTHO05D003571 6.9e-07 57.4 91 45.1
Psat1g140480 Pisum sativum HOM05D003238 ORTHO05D003571 6.9e-07 57.4 90 44.4
Migut.D00960 Erythranthe guttata HOM05D003238 ORTHO05D003571 1.2e-06 56.6 73 38.4
Nitab4.5_0000415g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.2e-06 56.6 40 65.0
TPR.G13426 Trifolium pratense HOM05D003238 ORTHO05D003571 1.2e-06 56.6 48 58.3
A03p13050 Brassica napus HOM05D003238 ORTHO05D003571 1.5e-06 56.2 118 32.2
CANSAT56G2721 Cannabis sativa HOM05D003238 ORTHO05D003571 1.5e-06 56.2 78 44.9
TAR624G0020 Trochodendron aralioides HOM05D003238 ORTHO05D003571 2.6e-06 55.5 58 48.3
BcaB01g04436 Brassica carinata HOM05D003238 ORTHO05D003571 4.5e-06 54.7 117 41.9
C09p48650 Brassica napus HOM05D003238 ORTHO05D003571 4.5e-06 54.7 117 34.2
Thhalv10014757m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 4.5e-06 54.7 122 31.1
BcaB05g22307 Brassica carinata HOM05D003238 ORTHO05D003571 5.9e-06 54.3 59 50.8
Lj6g0026431 Lotus japonicus HOM05D003238 ORTHO05D003571 5.9e-06 54.3 82 43.9
BcaC04g20028 Brassica carinata HOM05D003238 ORTHO05D003571 7.7e-06 53.9 119 33.6
BolC3t13964H Brassica oleracea HOM05D003238 ORTHO05D003571 7.7e-06 53.9 118 44.1
BolC9t57711H Brassica oleracea HOM05D003238 ORTHO05D003571 7.7e-06 53.9 119 33.6
HanXRQChr06g0178591 Helianthus annuus HOM05D003238 ORTHO05D003571 7.7e-06 53.9 94 38.3
Zm00001eb310990 Zea mays HOM05D003238 ORTHO05D003571 7.7e-06 53.9 102 39.2


User provided reference genes

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