Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003539 Carpinus fangiana HOM05D006979 ORTHO05D008857 1.1e-165 586.6 302 100.0
Haze_16022 Corylus avellana HOM05D006979 ORTHO05D008857 3.7e-134 481.9 303 86.1
QL05p008051 Quercus lobata HOM05D006979 ORTHO05D008857 2.5e-119 432.6 348 68.1
CiPaw.01G219600 Carya illinoinensis HOM05D006979 ORTHO05D008857 1.3e-115 420.2 256 85.5
Potri.003G063800 Populus trichocarpa HOM05D006979 ORTHO05D008857 4.2e-114 415.2 299 71.6
Prupe.3G042700 Prunus persica HOM05D006979 ORTHO05D008857 5.5e-114 414.8 280 77.1
TAR383G0452 Trochodendron aralioides HOM05D006979 ORTHO05D008857 3.0e-112 409.1 305 70.2
FAN09G4734 Fragaria x ananassa HOM05D006979 ORTHO05D008857 6.7e-112 407.9 302 71.9
FvH4_6g34590 Fragaria vesca HOM05D006979 ORTHO05D008857 8.8e-112 407.5 302 71.9
RcHm_v2.0_Chr2g0145111 Rosa chinensis HOM05D006979 ORTHO05D008857 2.0e-111 406.4 303 72.6
MD09G1184500 Malus domestica HOM05D006979 ORTHO05D008857 2.2e-110 402.9 277 73.3
Manes.11G021300 Manihot esculenta HOM05D006979 ORTHO05D008857 3.7e-110 402.1 299 69.6
GSVIVG01016774001 Vitis vinifera HOM05D006979 ORTHO05D008857 3.5e-108 395.6 291 72.5
CANSAT56G2284 Cannabis sativa HOM05D006979 ORTHO05D008857 5.9e-108 394.8 308 69.5
Ciclev10026147m.g Citrus clementina HOM05D006979 ORTHO05D008857 1.0e-107 394.0 303 68.3
Sabra03G0037400 Salix brachista HOM05D006979 ORTHO05D008857 1.7e-107 393.3 305 66.6
Atru.chr1.3953 Acer truncatum HOM05D006979 ORTHO05D008857 1.1e-106 390.6 305 67.2
AUR62009880 Chenopodium quinoa HOM05D006979 ORTHO05D008857 3.6e-105 385.6 300 67.0
AUR62001490 Chenopodium quinoa HOM05D006979 ORTHO05D008857 6.1e-105 384.8 300 67.0
Dinv04035 Davidia involucrata HOM05D006979 ORTHO05D008857 1.0e-104 384.0 258 75.6
Actinidia32181 Actinidia chinensis HOM05D006979 ORTHO05D008857 1.4e-104 383.6 293 69.6
CSS0018635 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 1.4e-104 383.6 305 68.5
CSS0026622 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 2.3e-104 382.9 307 68.1
Thecc.06G118900 Theobroma cacao HOM05D006979 ORTHO05D008857 3.0e-104 382.5 296 67.2
Glyma.07G036000 Glycine max HOM05D006979 ORTHO05D008857 5.2e-104 381.7 308 66.9
Lj3g0022239 Lotus japonicus HOM05D006979 ORTHO05D008857 8.8e-104 380.9 300 67.3
Duzib235G1224 Durio zibethinus HOM05D006979 ORTHO05D008857 1.1e-103 380.6 300 66.7
Phvul.010G133500 Phaseolus vulgaris HOM05D006979 ORTHO05D008857 1.1e-103 380.6 264 73.1
Cpa.g.sc25.110 Carica papaya HOM05D006979 ORTHO05D008857 2.0e-103 379.8 297 68.4
Gorai.009G146700 Gossypium raimondii HOM05D006979 ORTHO05D008857 2.6e-103 379.4 297 66.0
COL.COLO4_30769 Corchorus olitorius HOM05D006979 ORTHO05D008857 3.3e-103 379.0 295 66.8
Sed0019772 Sechium edule HOM05D006979 ORTHO05D008857 3.3e-103 379.0 279 69.5
Glyma.16G005300 Glycine max HOM05D006979 ORTHO05D008857 4.4e-103 378.6 292 69.5
Gohir.D05G142800 Gossypium hirsutum HOM05D006979 ORTHO05D008857 4.4e-103 378.6 297 66.0
TWI31G0112 Tripterygium wilfordii HOM05D006979 ORTHO05D008857 2.8e-102 375.9 306 67.3
Lalb_Chr04g0263421 Lupinus albus HOM05D006979 ORTHO05D008857 4.8e-102 375.2 285 70.2
Nitab4.5_0001199g0130 Nicotiana tabacum HOM05D006979 ORTHO05D008857 1.4e-101 373.6 264 68.2
Rhsim08G0237900 Rhododendron simsii HOM05D006979 ORTHO05D008857 1.6e-100 370.2 267 68.9
FAN05G0457 Fragaria x ananassa HOM05D006979 ORTHO05D008857 2.0e-100 369.8 280 70.4
Nitab4.5_0000189g0250 Nicotiana tabacum HOM05D006979 ORTHO05D008857 2.6e-100 369.4 264 68.2
CsaV3_7G034520 Cucumis sativus L. HOM05D006979 ORTHO05D008857 2.2e-99 366.3 280 68.2
CAN.G1368.7 Capsicum annuum HOM05D006979 ORTHO05D008857 3.8e-99 365.5 263 67.7
vmacro15023 Vaccinium macrocarpon HOM05D006979 ORTHO05D008857 3.8e-99 365.5 299 63.9
PGSC0003DMG400011606 Solanum tuberosum HOM05D006979 ORTHO05D008857 5.0e-99 365.2 263 67.7
Migut.D00941 Erythranthe guttata HOM05D006979 ORTHO05D008857 1.9e-98 363.2 296 62.8
Medtr8g019510 Medicago truncatula HOM05D006979 ORTHO05D008857 3.2e-98 362.5 269 68.4
TPR.G16442 Trifolium pratense HOM05D006979 ORTHO05D008857 3.2e-98 362.5 294 65.6
VMungo0331G0985 Vigna mungo HOM05D006979 ORTHO05D008857 3.2e-98 362.5 275 67.6
SGA_v2.0_scaffold4G02061 Striga asiatica HOM05D006979 ORTHO05D008857 1.2e-97 360.5 300 63.0
Oeu015481.1 Olea europaea HOM05D006979 ORTHO05D008857 2.1e-97 359.8 279 67.0
Eucgr.F03173 Eucalyptus grandis HOM05D006979 ORTHO05D008857 8.0e-97 357.8 282 67.0
Sopen12g023760 Solanum pennellii HOM05D006979 ORTHO05D008857 1.0e-96 357.5 262 67.2
Aqoxy5G02291 Aquilegia oxysepala HOM05D006979 ORTHO05D008857 1.5e-95 353.6 268 67.2
SalBow7G2243 Salvia bowleyana HOM05D006979 ORTHO05D008857 1.3e-94 350.5 300 62.3
Lsat_1_v5_gn_5_135940 Lactuca sativa HOM05D006979 ORTHO05D008857 1.7e-94 350.1 268 64.2
PSO210G4684 Papaver somniferum HOM05D006979 ORTHO05D008857 6.3e-94 348.2 274 66.1
Hund05741 Selenicereus undatus HOM05D006979 ORTHO05D008857 1.1e-93 347.4 316 59.2
THA.LOC104813956 Tarenaya hassleriana HOM05D006979 ORTHO05D008857 1.1e-93 347.4 308 61.7
Solyc12g049280.3 Solanum lycopersicum HOM05D006979 ORTHO05D008857 3.1e-93 345.9 247 68.0
ClCG09G000940 Citrullus lanatus HOM05D006979 ORTHO05D008857 4.1e-93 345.5 308 60.1
Lj9A522T69 Lonicera japonica HOM05D006979 ORTHO05D008857 5.4e-93 345.1 249 71.5
ECA234G1570 Erigeron canadensis HOM05D006979 ORTHO05D008857 2.0e-92 343.2 272 61.0
Peaxi162Scf00177g00513 Petunia axillaris HOM05D006979 ORTHO05D008857 1.0e-91 340.9 263 65.8
PSO210G5065 Papaver somniferum HOM05D006979 ORTHO05D008857 2.2e-91 339.7 288 62.5
Atru.chr1.3954 Acer truncatum HOM05D006979 ORTHO05D008857 2.5e-90 336.3 245 69.8
Sc08g0005680 Simmondsia chinensis HOM05D006979 ORTHO05D008857 9.4e-90 334.3 297 59.9
BcaNung07150 Brassica carinata HOM05D006979 ORTHO05D008857 1.6e-89 333.6 310 57.7
Carub.0002s1948 Capsella rubella HOM05D006979 ORTHO05D008857 4.7e-89 332.0 310 57.1
Gohir.A05G140600 Gossypium hirsutum HOM05D006979 ORTHO05D008857 6.1e-89 331.6 297 59.9
AL2G32310 Arabidopsis lyrata HOM05D006979 ORTHO05D008857 1.8e-88 330.1 302 56.6
unitig_8.g3563 Utricularia gibba HOM05D006979 ORTHO05D008857 1.2e-87 327.4 268 63.4
Sp5g27700 Schrenkiella parvula HOM05D006979 ORTHO05D008857 2.6e-87 326.2 301 56.5
CDE05G0714 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 5.7e-87 325.1 255 62.4
MBI19_g11849_MAGBIO Magnolia biondii HOM05D006979 ORTHO05D008857 5.7e-87 325.1 283 62.2
PGR119G0938 Punica granatum HOM05D006979 ORTHO05D008857 5.7e-87 325.1 269 65.4
C06p46960 Brassica napus HOM05D006979 ORTHO05D008857 1.7e-86 323.6 311 55.0
BolC6t39737H Brassica oleracea HOM05D006979 ORTHO05D008857 1.7e-86 323.6 311 55.0
Cc04_g01400 Coffea canephora HOM05D006979 ORTHO05D008857 3.7e-86 322.4 240 68.8
BcaC08g46707 Brassica carinata HOM05D006979 ORTHO05D008857 1.8e-85 320.1 311 55.0
Aa31LG4G3010 Aethionema arabicum HOM05D006979 ORTHO05D008857 2.0e-84 316.6 270 61.9
Thhalv10018914m.g Eutrema salsugineum HOM05D006979 ORTHO05D008857 4.5e-84 315.5 273 59.3
Os03g0410700 Oryza sativa ssp. japonica HOM05D006979 ORTHO05D008857 7.7e-84 314.7 252 62.7
A07p38800 Brassica napus HOM05D006979 ORTHO05D008857 1.0e-83 314.3 325 52.0
BraA07t31434Z Brassica rapa HOM05D006979 ORTHO05D008857 1.0e-83 314.3 325 52.0
ATR0598G212 Amborella trichopoda HOM05D006979 ORTHO05D008857 2.3e-80 303.1 269 57.6
arahy.Tifrunner.gnm1.ann1.4E7AR5 Arachis hypogaea HOM05D006979 ORTHO05D008857 1.2e-79 300.8 298 56.4
arahy.Tifrunner.gnm1.ann1.IV001U Arachis hypogaea HOM05D006979 ORTHO05D008857 3.4e-79 299.3 298 56.4
Ca_05018_v3 Cicer arietinum L. HOM05D006979 ORTHO05D008857 4.0e-72 275.8 197 70.1
AT1G72640 Arabidopsis thaliana HOM05D006979 ORTHO05D008857 1.5e-71 273.9 251 59.4
Nn6g35601 Nelumbo nucifera HOM05D006979 ORTHO05D008857 1.3e-70 270.8 301 51.8
Psat4g183680 Pisum sativum HOM05D006979 ORTHO05D008857 3.7e-70 269.2 214 65.0
EL10Ac7g16405 Beta vulgaris HOM05D006979 ORTHO05D008857 8.6e-67 258.1 302 50.0
Hma1.2p1_0496F.1_g166210 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 2.8e-65 253.1 170 74.1
Zm00001eb019720 Zea mays HOM05D006979 ORTHO05D008857 2.6e-63 246.5 214 59.8
FAN14G3231 Fragaria x ananassa HOM05D006979 ORTHO05D008857 2.9e-62 243.0 161 74.5
Pp3c11_2100 Physcomitrium patens HOM05D006979 ORTHO05D008857 1.6e-60 237.3 274 47.1
CARHR065560 Cardamine hirsuta HOM05D006979 ORTHO05D008857 6.6e-59 231.9 190 60.0
Hma1.2p1_0496F.1_g166200 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 1.8e-56 223.8 210 61.0
MELO3C024358.2 Cucumis melo HOM05D006979 ORTHO05D008857 1.3e-54 217.6 149 73.8
SMO117G0249 Selaginella moellendorffii HOM05D006979 ORTHO05D008857 2.3e-51 206.8 258 43.8
AagrBONN_evm.TU.Sc2ySwM_362.1497 Anthoceros agrestis HOM05D006979 ORTHO05D008857 3.1e-48 196.4 202 52.0
Ah.08g216750 Amaranthus hybridus HOM05D006979 ORTHO05D008857 3.6e-41 172.9 185 55.7
SEGI_25115 Sequoiadendron giganteum HOM05D006979 ORTHO05D008857 1.4e-32 144.4 134 50.7
Mapoly0030s0153 Marchantia polymorpha HOM05D006979 ORTHO05D008857 1.9e-29 134.0 150 48.7
MCO12G160 Micromonas commoda HOM05D006979 ORTHO05D008857 1.1e-18 98.2 275 33.1
Cre02.g095133 Chlamydomonas reinhardtii HOM05D006979 ORTHO05D008857 1.5e-18 97.8 278 30.9
CDE05G2075 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 1.9e-18 97.4 192 33.9
RcHm_v2.0_Chr6g0307231 Rosa chinensis HOM05D006979 ORTHO05D008857 1.2e-15 88.2 56 75.0
RcHm_v2.0_Chr3g0497381 Rosa chinensis HOM05D006979 ORTHO05D008857 1.3e-14 84.7 56 71.4
Medtr8g019490 Medicago truncatula HOM05D006979 ORTHO05D008857 5.0e-14 82.8 107 43.9
PRCOL_00001479 Prasinoderma coloniale HOM05D006979 ORTHO05D008857 3.9e-11 73.2 118 36.4
Mapoly0030s0154 Marchantia polymorpha HOM05D006979 ORTHO05D008857 3.8e-06 56.6 54 42.6


User provided reference genes

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