Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003523 Carpinus fangiana HOM05D006176 ORTHO05D007346 1.1e-66 256.5 130 100.0
Haze_16045 Corylus avellana HOM05D006176 ORTHO05D007346 4.4e-60 234.6 129 90.7
CiPaw.01G217500 Carya illinoinensis HOM05D006176 ORTHO05D007346 5.6e-39 164.5 131 67.2
Thecc.06G122200 Theobroma cacao HOM05D006176 ORTHO05D007346 5.8e-36 154.5 129 58.9
Manes.04G145900 Manihot esculenta HOM05D006176 ORTHO05D007346 1.2e-33 146.7 125 58.4
Atru.chr1.4021 Acer truncatum HOM05D006176 ORTHO05D007346 1.6e-33 146.4 125 62.4
Atru.chr1.4004 Acer truncatum HOM05D006176 ORTHO05D007346 1.7e-32 142.9 125 61.6
RcHm_v2.0_Chr2g0146001 Rosa chinensis HOM05D006176 ORTHO05D007346 5.6e-31 137.9 104 63.5
COL.COLO4_30741 Corchorus olitorius HOM05D006176 ORTHO05D007346 7.3e-31 137.5 131 54.2
Duzib192G0929 Durio zibethinus HOM05D006176 ORTHO05D007346 2.1e-30 136.0 130 56.2
FAN09G3283 Fragaria x ananassa HOM05D006176 ORTHO05D007346 6.2e-30 134.4 104 61.5
Gohir.A05G139800 Gossypium hirsutum HOM05D006176 ORTHO05D007346 1.1e-29 133.7 132 52.3
Gohir.D05G142000 Gossypium hirsutum HOM05D006176 ORTHO05D007346 1.1e-29 133.7 132 52.3
Gorai.009G146100 Gossypium raimondii HOM05D006176 ORTHO05D007346 1.1e-29 133.7 132 52.3
FvH4_6g34980 Fragaria vesca HOM05D006176 ORTHO05D007346 1.4e-29 133.3 104 61.5
FAN14G1476 Fragaria x ananassa HOM05D006176 ORTHO05D007346 1.4e-29 133.3 104 61.5
FAN05G0172 Fragaria x ananassa HOM05D006176 ORTHO05D007346 2.3e-29 132.5 101 62.4
Ah.08g216920 Amaranthus hybridus HOM05D006176 ORTHO05D007346 5.2e-29 131.3 120 55.0
TWI75G0921 Tripterygium wilfordii HOM05D006176 ORTHO05D007346 5.2e-29 131.3 119 56.3
MD17G1166900 Malus domestica HOM05D006176 ORTHO05D007346 2.6e-28 129.0 98 63.3
Prupe.3G039100 Prunus persica HOM05D006176 ORTHO05D007346 2.6e-28 129.0 130 53.8
MD09G1180800 Malus domestica HOM05D006176 ORTHO05D007346 3.4e-28 128.6 124 55.6
Actinidia26022 Actinidia chinensis HOM05D006176 ORTHO05D007346 1.3e-27 126.7 128 53.1
Nitab4.5_0000255g0320 Nicotiana tabacum HOM05D006176 ORTHO05D007346 1.3e-27 126.7 123 52.0
Phvul.010G128700 Phaseolus vulgaris HOM05D006176 ORTHO05D007346 2.2e-27 125.9 107 62.6
Potri.003G067200 Populus trichocarpa HOM05D006176 ORTHO05D007346 2.9e-27 125.6 111 55.9
Nitab4.5_0010678g0020 Nicotiana tabacum HOM05D006176 ORTHO05D007346 3.7e-27 125.2 118 51.7
QL05p004031 Quercus lobata HOM05D006176 ORTHO05D007346 6.4e-27 124.4 134 56.7
Sopen06g022380 Solanum pennellii HOM05D006176 ORTHO05D007346 8.3e-27 124.0 113 54.0
Dinv20423 Davidia involucrata HOM05D006176 ORTHO05D007346 1.4e-26 123.2 106 65.1
PGSC0003DMG400004890 Solanum tuberosum HOM05D006176 ORTHO05D007346 1.4e-26 123.2 106 56.6
Rhsim12G0210400 Rhododendron simsii HOM05D006176 ORTHO05D007346 1.9e-26 122.9 109 56.0
Rhsim12G0210800 Rhododendron simsii HOM05D006176 ORTHO05D007346 7.1e-26 120.9 96 60.4
Dinv37860 Davidia involucrata HOM05D006176 ORTHO05D007346 9.2e-26 120.6 116 58.6
Nn8g38624 Nelumbo nucifera HOM05D006176 ORTHO05D007346 9.2e-26 120.6 129 49.6
Ca_23393_v3 Cicer arietinum L. HOM05D006176 ORTHO05D007346 1.2e-25 120.2 100 60.0
Potri.001G167600 Populus trichocarpa HOM05D006176 ORTHO05D007346 2.1e-25 119.4 125 51.2
Solyc06g062930.1 Solanum lycopersicum HOM05D006176 ORTHO05D007346 4.6e-25 118.2 113 51.3
Glyma.07G040000 Glycine max HOM05D006176 ORTHO05D007346 6.0e-25 117.9 132 55.3
Gohir.A10G054700 Gossypium hirsutum HOM05D006176 ORTHO05D007346 7.8e-25 117.5 100 60.0
Gohir.D10G056700 Gossypium hirsutum HOM05D006176 ORTHO05D007346 7.8e-25 117.5 100 60.0
Gorai.011G060500 Gossypium raimondii HOM05D006176 ORTHO05D007346 1.7e-24 116.3 100 59.0
Medtr8g021025 Medicago truncatula HOM05D006176 ORTHO05D007346 1.7e-24 116.3 123 51.2
Glyma.16G008800 Glycine max HOM05D006176 ORTHO05D007346 2.3e-24 115.9 128 56.2
TAR624G0214 Trochodendron aralioides HOM05D006176 ORTHO05D007346 2.3e-24 115.9 109 57.8
Lj3g0022886 Lotus japonicus HOM05D006176 ORTHO05D007346 3.9e-24 115.2 128 52.3
TPR.G16753 Trifolium pratense HOM05D006176 ORTHO05D007346 3.9e-24 115.2 114 52.6
SGA_v2.0_scaffold122G33347 Striga asiatica HOM05D006176 ORTHO05D007346 1.1e-23 113.6 114 50.9
Migut.D00934 Erythranthe guttata HOM05D006176 ORTHO05D007346 1.5e-23 113.2 111 55.0
EL10Ac7g16423 Beta vulgaris HOM05D006176 ORTHO05D007346 2.5e-23 112.5 116 44.8
Aqoxy2G03952 Aquilegia oxysepala HOM05D006176 ORTHO05D007346 7.3e-23 110.9 97 55.7
Migut.I01087 Erythranthe guttata HOM05D006176 ORTHO05D007346 2.1e-22 109.4 90 56.7
Oeu043644.1 Olea europaea HOM05D006176 ORTHO05D007346 2.1e-22 109.4 106 53.8
vmacro22033 Vaccinium macrocarpon HOM05D006176 ORTHO05D007346 8.1e-22 107.5 119 49.6
Oeu000400.1 Olea europaea HOM05D006176 ORTHO05D007346 1.1e-21 107.1 113 49.6
Sc12g0010640 Simmondsia chinensis HOM05D006176 ORTHO05D007346 3.1e-21 105.5 111 48.6
DCAR_022691 Daucus carota HOM05D006176 ORTHO05D007346 4.0e-21 105.1 97 56.7
CANSAT56G3952 Cannabis sativa HOM05D006176 ORTHO05D007346 1.2e-20 103.6 110 50.9
PGR102G2654 Punica granatum HOM05D006176 ORTHO05D007346 4.4e-20 101.7 104 54.8
SGA_v2.0_scaffold4G02067 Striga asiatica HOM05D006176 ORTHO05D007346 4.4e-20 101.7 91 54.9
Lalb_Chr04g0261121 Lupinus albus HOM05D006176 ORTHO05D007346 1.7e-19 99.8 116 50.9
AT1G54120 Arabidopsis thaliana HOM05D006176 ORTHO05D007346 3.8e-19 98.6 114 50.9
Lsat_1_v5_gn_4_94161 Lactuca sativa HOM05D006176 ORTHO05D007346 8.4e-19 97.4 100 47.0
Peaxi162Scf00038g02015 Petunia axillaris HOM05D006176 ORTHO05D007346 8.4e-19 97.4 115 45.2
Aa31LG8G1260 Aethionema arabicum HOM05D006176 ORTHO05D007346 1.9e-18 96.3 112 48.2
Aa31LG10G1290 Aethionema arabicum HOM05D006176 ORTHO05D007346 2.4e-18 95.9 120 47.5
Cpa.g.c40357 Carica papaya HOM05D006176 ORTHO05D007346 2.4e-18 95.9 112 46.4
PSO421G0391 Papaver somniferum HOM05D006176 ORTHO05D007346 2.4e-18 95.9 111 47.7
Carub.0001s4336 Capsella rubella HOM05D006176 ORTHO05D007346 5.4e-18 94.7 110 51.8
Ciclev10027265m.g Citrus clementina HOM05D006176 ORTHO05D007346 5.4e-18 94.7 111 49.5
MBI19_g09833_MAGBIO Magnolia biondii HOM05D006176 ORTHO05D007346 7.1e-18 94.4 91 49.5
PSO063G0286 Papaver somniferum HOM05D006176 ORTHO05D007346 2.1e-17 92.8 98 49.0
CARHR044470 Cardamine hirsuta HOM05D006176 ORTHO05D007346 2.7e-17 92.4 122 48.4
Thhalv10011868m.g Eutrema salsugineum HOM05D006176 ORTHO05D007346 2.7e-17 92.4 122 47.5
THA.LOC104822658 Tarenaya hassleriana HOM05D006176 ORTHO05D007346 4.6e-17 91.7 107 49.5
C06p15630 Brassica napus HOM05D006176 ORTHO05D007346 6.0e-17 91.3 100 49.0
Lalb_Chr14g0361931 Lupinus albus HOM05D006176 ORTHO05D007346 1.0e-16 90.5 129 40.3
MBI13_g35417_MAGBIO Magnolia biondii HOM05D006176 ORTHO05D007346 1.0e-16 90.5 106 42.5
AL1G62840 Arabidopsis lyrata HOM05D006176 ORTHO05D007346 1.3e-16 90.1 122 47.5
Thhalv10021772m.g Eutrema salsugineum HOM05D006176 ORTHO05D007346 1.3e-16 90.1 123 48.0
Sp3g12300 Schrenkiella parvula HOM05D006176 ORTHO05D007346 1.3e-16 90.1 124 46.8
BcaB07g33263 Brassica carinata HOM05D006176 ORTHO05D007346 3.9e-16 88.6 99 49.5
Psat4g168640 Pisum sativum HOM05D006176 ORTHO05D007346 3.9e-16 88.6 70 57.1
THA.LOC104810370 Tarenaya hassleriana HOM05D006176 ORTHO05D007346 5.1e-16 88.2 109 45.9
Sp1g40570 Schrenkiella parvula HOM05D006176 ORTHO05D007346 6.6e-16 87.8 110 48.2
Sed0000884 Sechium edule HOM05D006176 ORTHO05D007346 6.6e-16 87.8 92 44.6
Sopen03g041090 Solanum pennellii HOM05D006176 ORTHO05D007346 8.7e-16 87.4 98 43.9
BraA06t23268Z Brassica rapa HOM05D006176 ORTHO05D007346 1.5e-15 86.7 99 48.5
BcaB04g17025 Brassica carinata HOM05D006176 ORTHO05D007346 1.9e-15 86.3 110 46.4
A06p00540 Brassica napus HOM05D006176 ORTHO05D007346 1.9e-15 86.3 99 48.5
BcaC08g43592 Brassica carinata HOM05D006176 ORTHO05D007346 5.6e-15 84.7 111 45.0
C06p09900 Brassica napus HOM05D006176 ORTHO05D007346 5.6e-15 84.7 111 45.0
BolC6t36062H Brassica oleracea HOM05D006176 ORTHO05D007346 5.6e-15 84.7 111 45.0
ClCG07G014560 Citrullus lanatus HOM05D006176 ORTHO05D007346 7.3e-15 84.3 98 41.8
Nitab4.5_0000189g0110 Nicotiana tabacum HOM05D006176 ORTHO05D007346 7.3e-15 84.3 87 52.9
A08p01210 Brassica napus HOM05D006176 ORTHO05D007346 1.3e-14 83.6 110 44.5
BraA08t32172Z Brassica rapa HOM05D006176 ORTHO05D007346 1.3e-14 83.6 110 44.5
AT3G14060 Arabidopsis thaliana HOM05D006176 ORTHO05D007346 3.6e-14 82.0 110 46.4
BcaB02g10861 Brassica carinata HOM05D006176 ORTHO05D007346 3.6e-14 82.0 107 43.9
CARHR088900 Cardamine hirsuta HOM05D006176 ORTHO05D007346 3.6e-14 82.0 123 43.1
Sabra03G0039100 Salix brachista HOM05D006176 ORTHO05D007346 3.6e-14 82.0 110 43.6
PGSC0003DMG400022907 Solanum tuberosum HOM05D006176 ORTHO05D007346 3.6e-14 82.0 100 43.0
BcaC01g01436 Brassica carinata HOM05D006176 ORTHO05D007346 4.8e-14 81.6 110 44.5
C03p92010 Brassica napus HOM05D006176 ORTHO05D007346 4.8e-14 81.6 110 44.5
BolC3t21519H Brassica oleracea HOM05D006176 ORTHO05D007346 4.8e-14 81.6 110 44.5
MELO3C022667.2 Cucumis melo HOM05D006176 ORTHO05D007346 6.2e-14 81.3 96 40.6
AL3G26260 Arabidopsis lyrata HOM05D006176 ORTHO05D007346 8.1e-14 80.9 110 46.4
BolC6t36752H Brassica oleracea HOM05D006176 ORTHO05D007346 1.1e-13 80.5 88 48.9
A01p39590 Brassica napus HOM05D006176 ORTHO05D007346 1.4e-13 80.1 107 43.9
BraA01t03999Z Brassica rapa HOM05D006176 ORTHO05D007346 1.4e-13 80.1 107 43.9
BcaNung04891 Brassica carinata HOM05D006176 ORTHO05D007346 3.1e-13 79.0 107 43.9
C01p50530 Brassica napus HOM05D006176 ORTHO05D007346 3.1e-13 79.0 107 43.9
CsaV3_3G030710 Cucumis sativus L. HOM05D006176 ORTHO05D007346 3.1e-13 79.0 92 40.2
Lalb_Chr04g0263581 Lupinus albus HOM05D006176 ORTHO05D007346 4.0e-13 78.6 124 44.4
Lsat_1_v5_gn_5_136361 Lactuca sativa HOM05D006176 ORTHO05D007346 6.9e-13 77.8 119 40.3
BolC1t05004H Brassica oleracea HOM05D006176 ORTHO05D007346 9.0e-13 77.4 107 43.0
MSTRG.10943 Avicennia marina HOM05D006176 ORTHO05D007346 1.3e-11 73.6 113 37.2
Carub.0003s1365 Capsella rubella HOM05D006176 ORTHO05D007346 4.9e-11 71.6 111 42.3
Sed0005659 Sechium edule HOM05D006176 ORTHO05D007346 4.9e-11 71.6 95 44.2
SalBow6G3428 Salvia bowleyana HOM05D006176 ORTHO05D007346 1.9e-10 69.7 52 53.8
Nitab4.5_0005192g0040 Nicotiana tabacum HOM05D006176 ORTHO05D007346 2.4e-10 69.3 97 45.4
PGSC0003DMG400004373 Solanum tuberosum HOM05D006176 ORTHO05D007346 2.4e-10 69.3 86 47.7
HanXRQChr12g0360401 Helianthus annuus HOM05D006176 ORTHO05D007346 3.2e-10 68.9 70 45.7
MSTRG.10944 Avicennia marina HOM05D006176 ORTHO05D007346 4.2e-10 68.6 95 43.2
ECA234G1437 Erigeron canadensis HOM05D006176 ORTHO05D007346 2.7e-09 65.9 130 34.6
BcaC08g44161 Brassica carinata HOM05D006176 ORTHO05D007346 4.6e-09 65.1 102 37.3
CDE07G1640 Ceratophyllum demersum HOM05D006176 ORTHO05D007346 1.5e-07 60.1 118 34.7
PGSC0003DMG400004372 Solanum tuberosum HOM05D064183 ORTHO05D051167 9.6e-07 57.4 90 34.4
PGSC0003DMG400016086 Solanum tuberosum HOM05D021761 ORTHO05D007346 2.1e-06 56.2 100 36.0
PGSC0003DMG400016087 Solanum tuberosum HOM05D021761 ORTHO05D007346 2.1e-06 56.2 98 38.8
PGSC0003DMG400016088 Solanum tuberosum HOM05D021761 ORTHO05D007346 6.2e-06 54.7 95 40.0


User provided reference genes

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