Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003508 Carpinus fangiana HOM05D003848 ORTHO05D004616 1.6e-200 703.0 480 100.0
Haze_16066 Corylus avellana HOM05D003848 ORTHO05D004616 1.2e-168 597.0 475 89.3
Haze_04691 Corylus avellana HOM05D003848 ORTHO05D004616 3.7e-165 585.5 480 89.0
Cfa006159 Carpinus fangiana HOM05D003848 ORTHO05D004616 3.3e-161 572.4 482 85.3
CiPaw.08G106300 Carya illinoinensis HOM05D003848 ORTHO05D004616 1.8e-119 433.7 497 67.0
QL01p012613 Quercus lobata HOM05D003848 ORTHO05D004616 4.8e-104 382.5 511 66.5
Glyma.10G027400 Glycine max HOM05D003848 ORTHO05D004616 2.6e-102 376.7 502 68.3
VMungo0720G2447 Vigna mungo HOM05D003848 ORTHO05D004616 7.7e-102 375.2 509 65.0
arahy.Tifrunner.gnm1.ann1.ARWK2P Arachis hypogaea HOM05D003848 ORTHO05D004616 2.5e-100 370.2 544 63.4
Glyma.02G146600 Glycine max HOM05D003848 ORTHO05D004616 4.2e-100 369.4 512 66.8
arahy.Tifrunner.gnm1.ann1.X3NAFX Arachis hypogaea HOM05D003848 ORTHO05D004616 2.1e-99 367.1 538 61.2
Cpa.g.sc52.49 Carica papaya HOM05D003848 ORTHO05D004616 4.7e-99 365.9 536 63.6
Phvul.007G172800 Phaseolus vulgaris HOM05D003848 ORTHO05D004616 4.7e-99 365.9 497 64.4
Psat4g156760 Pisum sativum HOM05D003848 ORTHO05D004616 7.9e-99 365.2 512 62.3
Lalb_Chr06g0162931 Lupinus albus HOM05D003848 ORTHO05D004616 1.5e-97 360.9 543 61.7
TWI59G1147 Tripterygium wilfordii HOM05D003848 ORTHO05D004616 2.0e-97 360.5 520 63.1
Lj5g0005692 Lotus japonicus HOM05D003848 ORTHO05D004616 7.4e-97 358.6 502 62.7
Potri.002G051500 Populus trichocarpa HOM05D003848 ORTHO05D004616 2.8e-96 356.7 537 60.0
Thecc.01G276600 Theobroma cacao HOM05D003848 ORTHO05D004616 2.6e-94 350.1 546 58.4
Gohir.A12G004500 Gossypium hirsutum HOM05D003848 ORTHO05D004616 1.7e-93 347.4 518 63.1
COL.COLO4_09072 Corchorus olitorius HOM05D003848 ORTHO05D004616 2.2e-93 347.1 514 49.8
GSVIVG01001165001 Vitis vinifera HOM05D003848 ORTHO05D004616 5.0e-93 345.9 477 62.1
Prupe.8G239200 Prunus persica HOM05D003848 ORTHO05D004616 6.5e-93 345.5 538 62.1
Atru.chr5.1462 Acer truncatum HOM05D003848 ORTHO05D004616 1.1e-92 344.7 526 61.2
Medtr8g028640 Medicago truncatula HOM05D003848 ORTHO05D004616 1.1e-92 344.7 503 65.2
FvH4_4g12190 Fragaria vesca HOM05D003848 ORTHO05D004616 1.9e-92 344.0 519 61.8
FAN07G0259 Fragaria x ananassa HOM05D003848 ORTHO05D004616 2.1e-91 340.5 522 62.1
FAN17G2080 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.4e-90 337.8 516 63.2
RcHm_v2.0_Chr4g0409951 Rosa chinensis HOM05D003848 ORTHO05D004616 1.4e-90 337.8 510 62.4
Ca_09749_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 6.7e-90 335.5 514 62.8
Ciclev10019827m.g Citrus clementina HOM05D003848 ORTHO05D004616 1.1e-89 334.7 502 64.9
Potri.005G210900 Populus trichocarpa HOM05D003848 ORTHO05D004616 2.0e-89 334.0 518 62.9
MD11G1283600 Malus domestica HOM05D003848 ORTHO05D004616 2.6e-89 333.6 537 62.4
Gorai.008G004000 Gossypium raimondii HOM05D003848 ORTHO05D004616 5.7e-89 332.4 516 64.5
MELO3C009735.2 Cucumis melo HOM05D003848 ORTHO05D004616 2.8e-88 330.1 546 59.2
CsaV3_3G039920 Cucumis sativus L. HOM05D003848 ORTHO05D004616 3.7e-88 329.7 543 60.6
Manes.05G077600 Manihot esculenta HOM05D003848 ORTHO05D004616 2.4e-87 327.0 537 62.0
Gohir.D12G004200 Gossypium hirsutum HOM05D003848 ORTHO05D004616 9.1e-87 325.1 517 63.1
Sabra05G0161100 Salix brachista HOM05D003848 ORTHO05D004616 9.1e-87 325.1 526 58.9
Aqoxy2G03377 Aquilegia oxysepala HOM05D003848 ORTHO05D004616 1.2e-86 324.7 530 57.5
Oeu041715.2 Olea europaea HOM05D003848 ORTHO05D004616 2.2e-85 320.5 517 53.0
Dinv32920 Davidia involucrata HOM05D003848 ORTHO05D004616 5.0e-85 319.3 424 63.0
Hma1.2p1_0822F.1_g224390 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 1.1e-84 318.2 480 59.0
CAN.G439.4 Capsicum annuum HOM05D003848 ORTHO05D004616 1.9e-84 317.4 501 58.7
PGR119G0967 Punica granatum HOM05D003848 ORTHO05D004616 1.9e-84 317.4 563 60.2
Sopen11g029330 Solanum pennellii HOM05D003848 ORTHO05D004616 2.5e-84 317.0 560 53.2
Solyc11g071660.1 Solanum lycopersicum HOM05D003848 ORTHO05D004616 2.1e-83 313.9 563 54.0
Oeu028073.1 Olea europaea HOM05D003848 ORTHO05D004616 4.7e-83 312.8 511 58.3
MD03G1262900 Malus domestica HOM05D003848 ORTHO05D004616 8.0e-83 312.0 539 61.2
Nitab4.5_0005156g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 8.0e-83 312.0 431 64.5
PGSC0003DMG400046756 Solanum tuberosum HOM05D003848 ORTHO05D004616 1.8e-82 310.8 552 54.5
Nn1g02285 Nelumbo nucifera HOM05D003848 ORTHO05D004616 3.0e-82 310.1 549 57.2
Cc01_g10690 Coffea canephora HOM05D003848 ORTHO05D004616 4.0e-82 309.7 589 51.4
MSTRG.21553 Avicennia marina HOM05D003848 ORTHO05D004616 6.8e-82 308.9 568 53.9
Nitab4.5_0006700g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 8.8e-82 308.5 426 68.8
Sed0011367 Sechium edule HOM05D003848 ORTHO05D004616 8.8e-82 308.5 529 60.9
HPP92_009020 Vanilla planifolia HOM05D003848 ORTHO05D004616 8.8e-82 308.5 463 56.2
Cc00_g04130 Coffea canephora HOM05D003848 ORTHO05D004616 1.2e-81 308.1 452 62.4
vmacro18863 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 3.4e-81 306.6 506 60.3
SGA_v2.0_scaffold1G00491 Striga asiatica HOM05D003848 ORTHO05D004616 5.7e-81 305.8 499 61.9
Migut.D00312 Erythranthe guttata HOM05D003848 ORTHO05D004616 7.5e-81 305.4 548 57.7
QL03p072399 Quercus lobata HOM05D003848 ORTHO05D004616 7.5e-81 305.4 489 57.1
ClCG10G016420 Citrullus lanatus HOM05D003848 ORTHO05D004616 1.3e-80 304.7 541 60.3
FAN22G0164 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.3e-80 304.7 502 60.4
vmacro19513 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 3.7e-80 303.1 509 57.0
THA.LOC104801238 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 4.8e-80 302.8 429 66.9
TAR369G1095 Trochodendron aralioides HOM05D003848 ORTHO05D004616 8.3e-80 302.0 539 52.3
Lj2C1116T3 Lonicera japonica HOM05D003848 ORTHO05D004616 1.4e-79 301.2 526 59.9
Aa31LG5G2360 Aethionema arabicum HOM05D003848 ORTHO05D004616 4.1e-79 299.7 439 62.6
unitig_0.g1040 Utricularia gibba HOM05D003848 ORTHO05D004616 5.4e-79 299.3 505 50.5
Manes.01G206800 Manihot esculenta HOM05D003848 ORTHO05D004616 7.0e-79 298.9 520 48.3
MBI07_g03188_MAGBIO Magnolia biondii HOM05D003848 ORTHO05D004616 9.1e-79 298.5 553 48.8
Rhsim01G0273900 Rhododendron simsii HOM05D003848 ORTHO05D004616 4.5e-78 296.2 444 59.2
ECA248G3600 Erigeron canadensis HOM05D003848 ORTHO05D004616 5.9e-78 295.8 542 55.0
Thhalv10028691m.g Eutrema salsugineum HOM05D003848 ORTHO05D004616 5.9e-78 295.8 415 68.9
THA.LOC104825995 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 1.7e-77 294.3 434 67.1
BcaB01g02014 Brassica carinata HOM05D003848 ORTHO05D004616 2.2e-77 293.9 409 65.0
ATR0332G007 Amborella trichopoda HOM05D003848 ORTHO05D004616 2.9e-77 293.5 525 50.5
TAR633G0718 Trochodendron aralioides HOM05D003848 ORTHO05D004616 3.8e-77 293.1 551 58.6
Lj1C175T4 Lonicera japonica HOM05D003848 ORTHO05D004616 5.0e-77 292.7 529 59.7
ATR0824G270 Amborella trichopoda HOM05D003848 ORTHO05D004616 1.9e-76 290.8 560 43.9
AT4G02720 Arabidopsis thaliana HOM05D003848 ORTHO05D004616 2.5e-76 290.4 423 67.1
Actinidia24902 Actinidia chinensis HOM05D003848 ORTHO05D004616 5.5e-76 289.3 533 58.5
HanXRQChr01g0002971 Helianthus annuus HOM05D003848 ORTHO05D004616 5.5e-76 289.3 564 55.5
Peaxi162Scf00217g00025 Petunia axillaris HOM05D003848 ORTHO05D004616 9.4e-76 288.5 529 56.7
AL6G50290 Arabidopsis lyrata HOM05D003848 ORTHO05D004616 1.2e-75 288.1 424 66.3
SHI27493 Sapria himalayana HOM05D004058 ORTHO05D001984 2.7e-75 287.0 174 85.6
Carub.0006s3439 Capsella rubella HOM05D003848 ORTHO05D004616 1.0e-74 285.0 430 66.3
TPR.G28157 Trifolium pratense HOM05D003848 ORTHO05D004616 1.0e-74 285.0 163 89.6
SEGI_20713 Sequoiadendron giganteum HOM05D003848 ORTHO05D004616 2.3e-74 283.9 165 90.3
DCAR_000720 Daucus carota HOM05D003848 ORTHO05D004616 6.8e-74 282.3 511 57.7
CANSAT01G1819 Cannabis sativa HOM05D003848 ORTHO05D004616 1.2e-73 281.6 428 61.7
FAN22G1557 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.2e-73 281.6 179 83.2
Lsat_1_v5_gn_5_184160 Lactuca sativa HOM05D003848 ORTHO05D004616 1.2e-73 281.6 556 57.0
EL10Ac5g10556 Beta vulgaris HOM05D003848 ORTHO05D004616 2.0e-73 280.8 515 58.4
Sp6g02650 Schrenkiella parvula HOM05D003848 ORTHO05D004616 9.8e-73 278.5 417 66.4
AagrBONN_evm.TU.Sc2ySwM_362.1784 Anthoceros agrestis HOM05D003848 ORTHO05D004616 1.3e-72 278.1 166 86.7
CDE06G2067 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 1.3e-72 278.1 476 52.3
BolC9t53150H Brassica oleracea HOM05D003848 ORTHO05D004616 1.7e-72 277.7 408 62.7
Zm00001eb314820 Zea mays HOM05D003848 ORTHO05D004616 8.3e-72 275.4 401 61.8
Sc24g0003320 Simmondsia chinensis HOM05D003848 ORTHO05D004616 1.4e-71 274.6 565 51.9
Mapoly0051s0007 Marchantia polymorpha HOM05D003848 ORTHO05D004616 1.2e-70 271.6 164 83.5
CARHR251050 Cardamine hirsuta HOM05D003848 ORTHO05D004616 2.7e-70 270.4 410 64.9
BolC8t51344H Brassica oleracea HOM05D003848 ORTHO05D004616 4.5e-70 269.6 409 58.9
BcaC04g24009 Brassica carinata HOM05D003848 ORTHO05D004616 7.7e-70 268.9 407 61.4
A09p02120 Brassica napus HOM05D003848 ORTHO05D004616 1.7e-69 267.7 408 57.8
SMO231G0049 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 1.7e-69 267.7 172 79.1
BraA09t35861Z Brassica rapa HOM05D003848 ORTHO05D004616 3.8e-69 266.5 408 56.9
Pp3c9_17960 Physcomitrium patens HOM05D003848 ORTHO05D004616 5.0e-69 266.2 163 81.6
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 6.6e-69 265.8 170 79.4
CBR_g4136 Chara braunii HOM05D003848 ORTHO05D004616 2.5e-68 263.8 171 78.9
Ah.02g110950 Amaranthus hybridus HOM05D003848 ORTHO05D004616 7.3e-68 262.3 157 85.4
C08p37610 Brassica napus HOM05D003848 ORTHO05D004616 2.8e-67 260.4 408 56.6
AagrBONN_evm.TU.Sc2ySwM_344.5133 Anthoceros agrestis HOM05D003848 ORTHO05D004616 1.0e-66 258.5 155 85.8
BcaC01g01560 Brassica carinata HOM05D003848 ORTHO05D004616 1.2e-65 255.0 178 75.3
Duzib177G1090 Durio zibethinus HOM05D003848 ORTHO05D004616 2.2e-64 250.8 176 75.6
PSO210G3188 Papaver somniferum HOM05D003848 ORTHO05D004616 2.2e-64 250.8 551 46.1
C03p93080 Brassica napus HOM05D003848 ORTHO05D004616 2.9e-64 250.4 175 76.6
PSO832G2619 Papaver somniferum HOM05D003848 ORTHO05D004616 3.7e-64 250.0 574 48.3
Hund11854 Selenicereus undatus HOM05D003848 ORTHO05D004616 3.7e-64 250.0 170 80.6
AUR62003538 Chenopodium quinoa HOM05D003848 ORTHO05D004616 4.9e-64 249.6 161 80.7
C03p93100 Brassica napus HOM05D003848 ORTHO05D004616 5.4e-63 246.1 408 55.6
AUR62017852 Chenopodium quinoa HOM05D003848 ORTHO05D004616 5.4e-63 246.1 514 48.8
C03p93150 Brassica napus HOM05D003848 ORTHO05D004616 2.7e-62 243.8 156 81.4
BolC3t21613H Brassica oleracea HOM05D003848 ORTHO05D004616 1.0e-61 241.9 408 54.2
BcaC01g01561 Brassica carinata HOM05D003848 ORTHO05D004616 1.7e-61 241.1 408 40.9
BcaC01g01554 Brassica carinata HOM05D003848 ORTHO05D004616 3.6e-59 233.4 134 86.6
C09p02210 Brassica napus HOM05D003848 ORTHO05D004616 4.7e-59 233.0 408 53.7
C03p93070 Brassica napus HOM05D003848 ORTHO05D004616 8.0e-59 232.3 133 87.2
BolC3t21610H Brassica oleracea HOM05D003848 ORTHO05D004616 6.8e-58 229.2 126 88.1
BcaC01g01558 Brassica carinata HOM05D003848 ORTHO05D004616 1.5e-57 228.0 133 85.7
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 2.0e-57 227.6 167 73.1
TPR.G23082 Trifolium pratense HOM05D003848 ORTHO05D004616 2.6e-57 227.3 131 87.8
A04p19390 Brassica napus HOM05D003848 ORTHO05D004616 3.4e-57 226.9 177 70.1
BraA04t17534Z Brassica rapa HOM05D003848 ORTHO05D004616 3.4e-57 226.9 171 71.3
BcaC02g08380 Brassica carinata HOM05D003848 ORTHO05D004616 4.9e-56 223.0 173 68.8
A09p30470 Brassica napus HOM05D003848 ORTHO05D004616 1.1e-55 221.9 133 83.5
A09p54740 Brassica napus HOM05D003848 ORTHO05D004616 1.1e-55 221.9 408 44.1
Rhsim10G0030500 Rhododendron simsii HOM05D003848 ORTHO05D004616 1.2e-54 218.4 359 55.4
C04p54970 Brassica napus HOM05D003848 ORTHO05D004616 2.0e-54 217.6 168 70.2
BolC4t27032H Brassica oleracea HOM05D003848 ORTHO05D004616 2.0e-54 217.6 168 70.2
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 2.1e-51 207.6 389 57.8
CDE07G1463 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 2.3e-50 204.1 158 69.6
SalBow4G2167 Salvia bowleyana HOM05D003848 ORTHO05D004616 1.9e-47 194.5 177 61.6
SGA_v2.0_scaffold138G35328 Striga asiatica HOM05D003848 ORTHO05D004616 9.5e-44 182.2 156 65.4
Ca_04836_v3 Cicer arietinum L. HOM05D001515 ORTHO05D004616 1.6e-43 181.4 120 79.2
C03p93140 Brassica napus HOM05D003848 ORTHO05D004616 4.7e-43 179.9 125 78.4
Nn4g26302 Nelumbo nucifera HOM05D003848 ORTHO05D004616 4.7e-43 179.9 102 90.2
BcaC03g13677 Brassica carinata HOM05D003848 ORTHO05D004616 3.4e-41 173.7 133 71.4
Oeu017054.1 Olea europaea HOM05D004271 ORTHO05D006011 4.4e-41 173.3 132 73.5
MCO02G035 Micromonas commoda HOM05D003848 ORTHO05D004616 5.4e-39 166.4 106 79.2
BcaC03g16168 Brassica carinata HOM05D003848 ORTHO05D004616 2.7e-38 164.1 104 78.8
FAN22G1718 Fragaria x ananassa HOM05D003848 ORTHO05D004616 3.0e-37 160.6 428 53.7
Hma1.2p1_0667F.1_g199770 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 9.6e-36 155.6 166 54.2
PRCOL_00001828 Prasinoderma coloniale HOM05D003848 ORTHO05D004616 2.4e-34 151.0 105 70.5
Cre01.g032250 Chlamydomonas reinhardtii HOM05D003848 ORTHO05D004616 1.2e-33 148.7 128 60.9
BraA09t40884Z Brassica rapa HOM05D003848 ORTHO05D004616 5.4e-31 139.8 85 82.4
BraA09t38617Z Brassica rapa HOM05D003848 ORTHO05D004616 3.5e-30 137.1 85 81.2
Os09g0455400 Oryza sativa ssp. japonica HOM05D003848 ORTHO05D004616 2.3e-29 134.4 70 94.3
Haze_27548 Corylus avellana HOM05D003848 ORTHO05D004616 1.1e-28 132.1 103 58.3
vmacro19512 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 1.1e-26 125.6 466 44.0
C02p39120 Brassica napus HOM05D003848 ORTHO05D004616 1.4e-26 125.2 86 73.3
BolC2t09922H Brassica oleracea HOM05D003848 ORTHO05D004616 4.0e-26 123.6 86 72.1
Actinidia21120 Actinidia chinensis HOM05D003848 ORTHO05D004616 1.2e-25 122.1 166 50.6
FAN22G0082 Fragaria x ananassa HOM05D003848 ORTHO05D035678 1.4e-23 115.2 192 43.8
unitig_0.g1042 Utricularia gibba HOM05D003848 ORTHO05D004616 2.1e-22 111.3 64 84.4
BNapus_Darmor_BZH_scaffold_38p02460 Brassica napus HOM05D003848 ORTHO05D004616 2.7e-22 110.9 69 78.3
BNapus_Darmor_BZH_scaffold_38p02440 Brassica napus HOM05D003848 ORTHO05D004616 3.5e-22 110.5 69 81.2
Ca_05843_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 9.6e-20 102.4 52 94.2
Lj1A173G45 Lonicera japonica HOM05D003848 ORTHO05D004616 1.3e-19 102.1 164 47.6
BolC2t06954H Brassica oleracea HOM05D003848 ORTHO05D004616 3.6e-19 100.5 69 76.8
MD07G1100600 Malus domestica HOM05D003848 ORTHO05D004616 1.1e-18 99.0 56 89.3
Prupe.6G167600 Prunus persica HOM05D003848 ORTHO05D004616 9.9e-17 92.4 56 83.9
C03p93060 Brassica napus HOM05D003848 ORTHO05D004616 6.4e-16 89.7 95 55.8
BcaC01g01557 Brassica carinata HOM05D003848 ORTHO05D004616 4.6e-14 83.6 58 70.7
BraA09t40883Z Brassica rapa HOM05D003848 ORTHO05D004616 5.6e-12 76.6 85 54.1
BolC3t21614H Brassica oleracea HOM05D003848 ORTHO05D004616 6.9e-10 69.7 50 66.0
FvH4_2g11951 Fragaria vesca HOM05D003848 ORTHO05D035678 2.6e-09 67.8 50 68.0
FAN24G2199 Fragaria x ananassa HOM05D003848 ORTHO05D035678 2.2e-08 64.7 50 66.0


User provided reference genes

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