Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003493 Carpinus fangiana HOM05D008180 ORTHO05D010413 2.6e-47 191.8 102 100.0
Haze_16099 Corylus avellana HOM05D008180 ORTHO05D010413 7.5e-39 163.7 104 83.7
TAR383G1001 Trochodendron aralioides HOM05D008180 ORTHO05D010413 9.8e-31 136.7 100 63.0
Prupe.3G035100 Prunus persica HOM05D008180 ORTHO05D010413 1.2e-28 129.8 102 62.7
QL05p001998 Quercus lobata HOM05D008180 ORTHO05D010413 2.0e-28 129.0 102 66.7
FvH4_6g35400 Fragaria vesca HOM05D008180 ORTHO05D010413 1.0e-27 126.7 102 61.8
FAN14G4598 Fragaria x ananassa HOM05D008180 ORTHO05D010413 1.0e-27 126.7 102 61.8
FAN05G1429 Fragaria x ananassa HOM05D008180 ORTHO05D010413 1.3e-27 126.3 102 62.7
RcHm_v2.0_Chr2g0146931 Rosa chinensis HOM05D008180 ORTHO05D010413 2.9e-27 125.2 102 61.8
FAN09G2443 Fragaria x ananassa HOM05D008180 ORTHO05D010413 3.8e-27 124.8 101 61.4
Thecc.06G127000 Theobroma cacao HOM05D008180 ORTHO05D010413 3.8e-27 124.8 100 62.0
Duzib192G0501 Durio zibethinus HOM05D008180 ORTHO05D010413 8.6e-27 123.6 100 61.0
Potri.003G070900 Populus trichocarpa HOM05D008180 ORTHO05D010413 4.2e-26 121.3 103 62.1
CiPaw.02G132900 Carya illinoinensis HOM05D008180 ORTHO05D010413 7.2e-26 120.6 107 60.7
Manes.04G149100 Manihot esculenta HOM05D008180 ORTHO05D010413 7.2e-26 120.6 99 58.6
Aqoxy7G04144 Aquilegia oxysepala HOM05D008180 ORTHO05D010413 1.0e-24 116.7 96 54.2
Duzib160G0302 Durio zibethinus HOM05D008180 ORTHO05D010413 1.4e-24 116.3 100 58.0
COL.COLO4_30829 Corchorus olitorius HOM05D008180 ORTHO05D010413 1.8e-24 115.9 102 58.8
MD09G1170600 Malus domestica HOM05D008180 ORTHO05D010413 1.8e-24 115.9 103 57.3
Hma1.2p1_0229F.1_g096930 Hydrangea macrophylla HOM05D008180 ORTHO05D010413 4.0e-24 114.8 98 58.2
Oeu011029.1 Olea europaea HOM05D008180 ORTHO05D010413 4.0e-24 114.8 99 59.6
Sabra03G0041800 Salix brachista HOM05D008180 ORTHO05D010413 8.9e-24 113.6 97 61.9
MD09G1089100 Malus domestica HOM05D008180 ORTHO05D010413 1.2e-23 113.2 96 55.2
MD09G1176100 Malus domestica HOM05D008180 ORTHO05D010413 1.5e-23 112.8 102 54.9
Manes.11G015000 Manihot esculenta HOM05D008180 ORTHO05D010413 2.0e-23 112.5 99 57.6
Eucgr.J02607 Eucalyptus grandis HOM05D008180 ORTHO05D010413 3.4e-23 111.7 101 51.5
Dinv20396 Davidia involucrata HOM05D008180 ORTHO05D010413 1.3e-22 109.8 98 57.1
MD09G1176000 Malus domestica HOM05D008180 ORTHO05D010413 1.7e-22 109.4 106 53.8
Nitab4.5_0003981g0070 Nicotiana tabacum HOM05D008180 ORTHO05D010413 2.2e-22 109.0 96 59.4
Actinidia31155 Actinidia chinensis HOM05D008180 ORTHO05D010413 3.7e-22 108.2 92 56.5
Ciclev10027003m.g Citrus clementina HOM05D008180 ORTHO05D010413 6.3e-22 107.5 105 52.4
CANSAT56G4049 Cannabis sativa HOM05D008180 ORTHO05D010413 3.1e-21 105.1 107 55.1
Nitab4.5_0002441g0020 Nicotiana tabacum HOM05D008180 ORTHO05D010413 3.1e-21 105.1 99 60.6
Gorai.010G235800 Gossypium raimondii HOM05D008180 ORTHO05D010413 7.0e-21 104.0 95 55.8
CAN.G790.64 Capsicum annuum HOM05D008180 ORTHO05D010413 2.0e-20 102.4 95 57.9
Peaxi162Scf00038g02225 Petunia axillaris HOM05D008180 ORTHO05D010413 2.7e-20 102.1 92 57.6
Solyc03g123550.1 Solanum lycopersicum HOM05D008180 ORTHO05D010413 2.7e-20 102.1 93 58.1
PGSC0003DMG400009174 Solanum tuberosum HOM05D008180 ORTHO05D010413 2.7e-20 102.1 87 59.8
Lsat_1_v5_gn_5_136761 Lactuca sativa HOM05D008180 ORTHO05D010413 5.9e-20 100.9 99 49.5
Sopen03g041320 Solanum pennellii HOM05D008180 ORTHO05D010413 7.8e-20 100.5 93 57.0
HanXRQChr10g0311921 Helianthus annuus HOM05D008180 ORTHO05D010413 1.0e-19 100.1 99 53.5
Migut.H00829 Erythranthe guttata HOM05D008180 ORTHO05D010413 1.3e-19 99.8 109 53.2
Lj3g0012909 Lotus japonicus HOM05D008180 ORTHO05D010413 1.7e-19 99.4 99 53.5
Actinidia26006 Actinidia chinensis HOM05D008180 ORTHO05D010413 2.9e-19 98.6 68 66.2
TPR.G16656 Trifolium pratense HOM05D008180 ORTHO05D010413 2.9e-19 98.6 100 52.0
Gohir.A06G194200 Gossypium hirsutum HOM05D008180 ORTHO05D010413 5.0e-19 97.8 95 52.6
Lj3g0016758 Lotus japonicus HOM05D008180 ORTHO05D010413 5.0e-19 97.8 99 52.5
Atru.chr1.4131 Acer truncatum HOM05D008180 ORTHO05D010413 1.1e-18 96.7 91 53.8
Gohir.D06G202000 Gossypium hirsutum HOM05D008180 ORTHO05D010413 1.1e-18 96.7 95 52.6
Glyma.16G011800 Glycine max HOM05D008180 ORTHO05D010413 1.9e-18 95.9 98 54.1
Cpa.g.sc25.170 Carica papaya HOM05D008180 ORTHO05D010413 2.5e-18 95.5 95 51.6
Medtr8g022340 Medicago truncatula HOM05D008180 ORTHO05D010413 4.3e-18 94.7 106 50.9
Glyma.07G043400 Glycine max HOM05D008180 ORTHO05D010413 2.1e-17 92.4 99 51.5
Lj3g0015781 Lotus japonicus HOM05D008180 ORTHO05D010413 2.1e-17 92.4 97 52.6
Lj3g0025585 Lotus japonicus HOM05D008180 ORTHO05D010413 2.3e-16 89.0 99 49.5
Lj3g0012306 Lotus japonicus HOM05D008180 ORTHO05D010413 4.0e-16 88.2 110 49.1
Lalb_Chr10g0101261 Lupinus albus HOM05D008180 ORTHO05D010413 5.2e-16 87.8 100 49.0
vmacro22017 Vaccinium macrocarpon HOM05D008180 ORTHO05D010413 5.2e-16 87.8 87 50.6
Lj3g0026562 Lotus japonicus HOM05D008180 ORTHO05D010413 8.9e-16 87.0 97 49.5
Phvul.010G127000 Phaseolus vulgaris HOM05D008180 ORTHO05D010413 2.0e-15 85.9 95 51.6
ECA234G2249 Erigeron canadensis HOM05D008180 ORTHO05D010413 4.4e-15 84.7 76 55.3
ATR0681G377 Amborella trichopoda HOM05D008180 ORTHO05D010413 1.4e-08 63.2 60 48.3
Lsat_1_v5_gn_4_67660 Lactuca sativa HOM05D000204 ORTHO05D001668 3.4e-07 58.5 71 42.3
Lalb_Chr03g0025271 Lupinus albus HOM05D000204 ORTHO05D001668 3.4e-07 58.5 71 40.8
MBI02_g30403_MAGBIO Magnolia biondii HOM05D000204 ORTHO05D002882 3.4e-07 58.5 60 41.7
Sabra01G0059500 Salix brachista HOM05D000204 ORTHO05D002882 3.4e-07 58.5 60 50.0
Sabra03G0107700 Salix brachista HOM05D000204 ORTHO05D002882 3.4e-07 58.5 60 45.0
TPR.G22943 Trifolium pratense HOM05D008180 ORTHO05D010413 3.4e-07 58.5 69 47.8
CSS0048307 Camellia sinensis var. sinensis HOM05D000204 ORTHO05D001668 5.8e-07 57.8 70 45.7
Lj3g0000174 Lotus japonicus HOM05D000204 ORTHO05D001668 5.8e-07 57.8 67 47.8
Lalb_Chr01g0002091 Lupinus albus HOM05D000204 ORTHO05D001668 5.8e-07 57.8 77 40.3
Ah.08g223380 Amaranthus hybridus HOM05D000204 ORTHO05D010030 7.5e-07 57.4 70 38.6
Lj1g0002942 Lotus japonicus HOM05D000204 ORTHO05D001668 7.5e-07 57.4 73 41.1
PSO170G1922 Papaver somniferum HOM05D000204 ORTHO05D004008 7.5e-07 57.4 78 41.0
arahy.Tifrunner.gnm1.ann1.C5MC3X Arachis hypogaea HOM05D000204 ORTHO05D001668 9.8e-07 57.0 70 44.3
Ciclev10003150m.g Citrus clementina HOM05D000204 ORTHO05D001668 1.3e-06 56.6 70 44.3
Glyma.06G079200 Glycine max HOM05D000204 ORTHO05D004008 1.3e-06 56.6 75 41.3
COL.COLO4_30907 Corchorus olitorius HOM05D000204 ORTHO05D002882 1.7e-06 56.2 61 45.9
Duzib192G0776 Durio zibethinus HOM05D000204 ORTHO05D002882 1.7e-06 56.2 60 46.7
arahy.Tifrunner.gnm1.ann1.3U3G48 Arachis hypogaea HOM05D000204 ORTHO05D001668 2.2e-06 55.8 70 44.3
Gohir.A10G048500 Gossypium hirsutum HOM05D000204 ORTHO05D002882 2.2e-06 55.8 60 48.3
Phvul.009G103800 Phaseolus vulgaris HOM05D000204 ORTHO05D004008 2.2e-06 55.8 78 41.0
SGA_v2.0_scaffold71G23974 Striga asiatica HOM05D000204 ORTHO05D004008 2.2e-06 55.8 76 36.8
Gohir.D10G049300 Gossypium hirsutum HOM05D000204 ORTHO05D002882 2.9e-06 55.5 60 48.3
Gorai.011G052800 Gossypium raimondii HOM05D000204 ORTHO05D002882 2.9e-06 55.5 60 48.3
Os04g0608300 Oryza sativa ssp. japonica HOM05D000204 ORTHO05D004008 2.9e-06 55.5 70 41.4
ClCG02G004420 Citrullus lanatus HOM05D000204 ORTHO05D001668 3.7e-06 55.1 82 41.5
FAN02G0357 Fragaria x ananassa HOM05D000204 ORTHO05D000021 3.7e-06 55.1 71 42.3
FAN05G2281 Fragaria x ananassa HOM05D000204 ORTHO05D000021 3.7e-06 55.1 71 42.3
QL11p046770 Quercus lobata HOM05D000204 ORTHO05D001668 3.7e-06 55.1 78 41.0
Sed0018500 Sechium edule HOM05D000204 ORTHO05D001668 3.7e-06 55.1 69 40.6
MD00G1067200 Malus domestica HOM05D000204 ORTHO05D001668 4.9e-06 54.7 70 42.9
Thecc.06G134100 Theobroma cacao HOM05D008180 ORTHO05D010030 4.9e-06 54.7 58 43.1
vmacro18737 Vaccinium macrocarpon HOM05D000204 ORTHO05D004008 4.9e-06 54.7 72 40.3
HPP92_000946 Vanilla planifolia HOM05D000204 ORTHO05D002882 4.9e-06 54.7 57 45.6
Zm00001eb071310 Zea mays HOM05D000204 ORTHO05D004008 4.9e-06 54.7 70 40.0
CsaV3_7G000560 Cucumis sativus L. HOM05D000204 ORTHO05D001668 6.4e-06 54.3 69 43.5
Dinv41986 Davidia involucrata HOM05D000204 ORTHO05D001668 6.4e-06 54.3 70 42.9
Duzib235G0272 Durio zibethinus HOM05D008180 ORTHO05D010030 6.4e-06 54.3 70 38.6
Glyma.04G078000 Glycine max HOM05D000204 ORTHO05D004008 6.4e-06 54.3 75 40.0
Lalb_Chr14g0369781 Lupinus albus HOM05D000204 ORTHO05D001668 6.4e-06 54.3 69 44.9
MD09G1166200 Malus domestica HOM05D000204 ORTHO05D004008 6.4e-06 54.3 78 37.2
MD10G1061400 Malus domestica HOM05D000204 ORTHO05D001668 6.4e-06 54.3 70 41.4
Cpa.g.sc26.27 Carica papaya HOM05D000204 ORTHO05D001668 8.3e-06 53.9 70 42.9
Cfa013929 Carpinus fangiana HOM05D000204 ORTHO05D001668 8.3e-06 53.9 70 41.4
CDE01G0111 Ceratophyllum demersum HOM05D000204 ORTHO05D002882 8.3e-06 53.9 60 45.0
COL.COLO4_30906 Corchorus olitorius HOM05D008180 ORTHO05D010030 8.3e-06 53.9 61 39.3
MELO3C003765.2 Cucumis melo HOM05D000204 ORTHO05D001668 8.3e-06 53.9 70 41.4
CsaV3_3G045710 Cucumis sativus L. HOM05D000204 ORTHO05D001668 8.3e-06 53.9 70 41.4
Medtr3g109160 Medicago truncatula HOM05D000204 ORTHO05D004008 8.3e-06 53.9 78 39.7
Medtr4g072160 Medicago truncatula HOM05D000204 ORTHO05D001668 8.3e-06 53.9 76 39.5
GSVIVG01029559001 Vitis vinifera HOM05D000057 ORTHO05D000021 8.3e-06 53.9 72 41.7


User provided reference genes

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