Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa003455 Carpinus fangiana HOM05D002316 ORTHO05D002280 1.4e-221 772.7 413 100.0
QL05p000933 Quercus lobata HOM05D002316 ORTHO05D002280 3.6e-156 555.4 422 71.6
QL05p001077 Quercus lobata HOM05D002316 ORTHO05D002280 1.1e-154 550.4 422 70.6
CiPaw.02G130400 Carya illinoinensis HOM05D002316 ORTHO05D002280 2.6e-154 549.3 427 71.0
CiPaw.01G210800 Carya illinoinensis HOM05D002316 ORTHO05D002280 6.3e-137 491.5 410 67.1
Dinv37816 Davidia involucrata HOM05D002316 ORTHO05D002280 4.5e-127 458.8 443 60.3
Atru.chr1.4173 Acer truncatum HOM05D002316 ORTHO05D002280 2.3e-123 446.4 424 59.9
Thecc.06G131100 Theobroma cacao HOM05D002316 ORTHO05D002280 1.5e-117 427.2 427 57.4
GSVIVG01016660001 Vitis vinifera HOM05D002316 ORTHO05D002280 1.9e-117 426.8 425 59.3
Cpa.g.sc25.201 Carica papaya HOM05D002316 ORTHO05D002280 9.5e-117 424.5 446 56.7
CANSAT56G3763 Cannabis sativa HOM05D002316 ORTHO05D002280 1.0e-115 421.0 436 56.9
CSS0017215 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 1.4e-115 420.6 428 58.2
Potri.003G073400 Populus trichocarpa HOM05D002316 ORTHO05D002280 2.3e-115 419.9 429 59.0
Manes.04G151600 Manihot esculenta HOM05D002316 ORTHO05D002280 8.9e-115 417.9 424 58.0
Ciclev10025233m.g Citrus clementina HOM05D002316 ORTHO05D002280 1.5e-114 417.2 427 55.7
COL.COLO4_30878 Corchorus olitorius HOM05D002316 ORTHO05D002280 2.0e-114 416.8 420 56.7
Gorai.009G148300 Gossypium raimondii HOM05D002316 ORTHO05D002280 1.4e-112 410.6 428 55.8
Gohir.D10G050800 Gossypium hirsutum HOM05D002316 ORTHO05D002280 2.4e-112 409.8 420 55.5
Duzib235G0584 Durio zibethinus HOM05D002316 ORTHO05D002280 9.2e-112 407.9 427 55.7
Gohir.A05G142100 Gossypium hirsutum HOM05D002316 ORTHO05D002280 1.2e-111 407.5 428 56.1
Dinv20376 Davidia involucrata HOM05D002316 ORTHO05D002280 1.0e-110 404.4 443 56.0
Eucgr.J02589 Eucalyptus grandis HOM05D002316 ORTHO05D002280 6.6e-110 401.7 425 56.2
Potri.001G161900 Populus trichocarpa HOM05D002316 ORTHO05D002280 6.6e-110 401.7 430 55.1
Duzib192G1048 Durio zibethinus HOM05D002316 ORTHO05D002280 4.3e-109 399.1 427 56.2
Gohir.A10G050200 Gossypium hirsutum HOM05D002316 ORTHO05D002280 7.3e-109 398.3 422 55.0
MD17G1154900 Malus domestica HOM05D002316 ORTHO05D002280 7.3e-109 398.3 498 49.4
Sabra01G0130600 Salix brachista HOM05D002316 ORTHO05D002280 1.4e-107 394.0 425 55.3
Sabra03G0044000 Salix brachista HOM05D002316 ORTHO05D002280 2.3e-107 393.3 421 57.0
Sed0002975 Sechium edule HOM05D002316 ORTHO05D002280 1.5e-106 390.6 426 55.2
MD09G1172000 Malus domestica HOM05D002316 ORTHO05D002280 7.5e-106 388.3 493 48.9
ClCG07G014240 Citrullus lanatus HOM05D002316 ORTHO05D002280 9.8e-106 387.9 428 54.7
TWI14G0140 Tripterygium wilfordii HOM05D002316 ORTHO05D002280 2.2e-105 386.7 438 53.0
Actinidia21843 Actinidia chinensis HOM05D002316 ORTHO05D002280 2.9e-105 386.3 444 52.9
MBI19_g32879_MAGBIO Magnolia biondii HOM05D002316 ORTHO05D002280 8.3e-105 384.8 436 54.8
Nn6g35747 Nelumbo nucifera HOM05D002316 ORTHO05D002280 3.2e-104 382.9 427 54.6
FAN02G0802 Fragaria x ananassa HOM05D002316 ORTHO05D002280 3.3e-101 372.9 508 47.6
FAN14G1755 Fragaria x ananassa HOM05D002316 ORTHO05D002280 9.5e-101 371.3 508 47.4
Oeu013438.1 Olea europaea HOM05D002316 ORTHO05D002280 2.1e-100 370.2 426 52.3
Lj5A28T49 Lonicera japonica HOM05D002316 ORTHO05D002280 3.6e-100 369.4 431 52.2
Gohir.D05G144400 Gossypium hirsutum HOM05D002316 ORTHO05D002280 6.2e-100 368.6 289 67.5
Aqoxy7G00923 Aquilegia oxysepala HOM05D002316 ORTHO05D002280 8.1e-100 368.2 430 51.6
FvH4_6g35990 Fragaria vesca HOM05D002316 ORTHO05D002280 1.1e-99 367.9 508 47.4
PGR102G1833 Punica granatum HOM05D002316 ORTHO05D002280 1.8e-99 367.1 425 52.9
Prupe.3G030400 Prunus persica HOM05D002316 ORTHO05D002280 5.2e-99 365.5 494 48.6
FAN05G5339 Fragaria x ananassa HOM05D002316 ORTHO05D002280 6.8e-99 365.2 508 46.9
FAN09G2036 Fragaria x ananassa HOM05D002316 ORTHO05D002280 1.5e-98 364.0 508 46.7
FAN14G3860 Fragaria x ananassa HOM05D002316 ORTHO05D002280 1.7e-97 360.5 508 47.0
Glyma.03G262900 Glycine max HOM05D002316 ORTHO05D002280 1.7e-97 360.5 423 52.7
Nitab4.5_0006338g0020 Nicotiana tabacum HOM05D002316 ORTHO05D002280 2.2e-97 360.1 438 52.3
Actinidia24418 Actinidia chinensis HOM05D002316 ORTHO05D002280 2.9e-97 359.8 440 49.8
Glyma.19G262000 Glycine max HOM05D002316 ORTHO05D002280 4.9e-97 359.0 413 53.3
Cc04_g00630 Coffea canephora HOM05D002316 ORTHO05D002280 1.4e-96 357.5 453 48.3
Nitab4.5_0006966g0030 Nicotiana tabacum HOM05D002316 ORTHO05D002280 2.4e-96 356.7 436 51.8
TWI59G0933 Tripterygium wilfordii HOM05D002316 ORTHO05D002280 9.2e-96 354.8 437 51.7
Gorai.011G054500 Gossypium raimondii HOM05D002316 ORTHO05D002280 1.6e-95 354.0 420 51.2
Lj1g0006356 Lotus japonicus HOM05D002316 ORTHO05D002280 2.1e-95 353.6 421 50.6
CsaV3_3G031100 Cucumis sativus L. HOM05D002316 ORTHO05D002280 6.0e-95 352.1 428 51.9
Lalb_Chr15g0076661 Lupinus albus HOM05D002316 ORTHO05D002280 1.3e-94 350.9 430 50.0
vmacro18716 Vaccinium macrocarpon HOM05D002316 ORTHO05D002280 1.7e-94 350.5 448 48.7
PSO724G1377 Papaver somniferum HOM05D002316 ORTHO05D002280 3.9e-94 349.4 432 49.5
Sc15g0000830 Simmondsia chinensis HOM05D002316 ORTHO05D002280 3.9e-94 349.4 415 49.6
Rhsim08G0245400 Rhododendron simsii HOM05D002316 ORTHO05D002280 1.9e-93 347.1 420 49.5
PSO135G1018 Papaver somniferum HOM05D002316 ORTHO05D002280 7.3e-93 345.1 435 51.0
MBI13_g41710_MAGBIO Magnolia biondii HOM05D002316 ORTHO05D002280 1.6e-92 344.0 439 48.7
VMungo1309G0979 Vigna mungo HOM05D002316 ORTHO05D002280 2.1e-92 343.6 423 51.1
RcHm_v2.0_Chr2g0148111 Rosa chinensis HOM05D002316 ORTHO05D002280 3.6e-92 342.8 508 46.7
TAR375G0959 Trochodendron aralioides HOM05D002316 ORTHO05D002280 3.6e-92 342.8 399 53.9
arahy.Tifrunner.gnm1.ann1.82DMKZ Arachis hypogaea HOM05D002316 ORTHO05D002280 4.0e-91 339.3 415 49.4
MELO3C026660.2 Cucumis melo HOM05D002316 ORTHO05D002280 6.8e-91 338.6 429 50.3
Phvul.009G261100 Phaseolus vulgaris HOM05D002316 ORTHO05D002280 6.8e-91 338.6 424 50.0
Migut.I01139 Erythranthe guttata HOM05D002316 ORTHO05D002280 1.5e-90 337.4 429 48.5
Carub.0001s4305 Capsella rubella HOM05D002316 ORTHO05D002280 6.4e-89 332.0 430 48.6
AL1G62470 Arabidopsis lyrata HOM05D002316 ORTHO05D002280 8.4e-89 331.6 440 49.1
arahy.Tifrunner.gnm1.ann1.JMV1FI Arachis hypogaea HOM05D002316 ORTHO05D002280 8.4e-89 331.6 417 50.4
BcaC08g43557 Brassica carinata HOM05D002316 ORTHO05D002280 8.4e-89 331.6 416 50.2
C06p09560 Brassica napus HOM05D002316 ORTHO05D002280 8.4e-89 331.6 416 50.2
BolC6t36030H Brassica oleracea HOM05D002316 ORTHO05D002280 8.4e-89 331.6 416 50.2
BraA06t23311Z Brassica rapa HOM05D002316 ORTHO05D002280 1.9e-88 330.5 416 49.0
A06p00770 Brassica napus HOM05D002316 ORTHO05D002280 3.2e-88 329.7 416 49.0
Medtr7g117530 Medicago truncatula HOM05D002316 ORTHO05D002280 4.2e-88 329.3 422 50.2
PGSC0003DMG400009152 Solanum tuberosum HOM05D002316 ORTHO05D002280 4.2e-88 329.3 458 46.9
Thhalv10011340m.g Eutrema salsugineum HOM05D002316 ORTHO05D002280 5.4e-88 328.9 437 49.0
CAN.G790.53 Capsicum annuum HOM05D002316 ORTHO05D002280 9.3e-88 328.2 456 48.5
BcaC08g44130 Brassica carinata HOM05D002316 ORTHO05D002280 1.2e-87 327.8 416 49.0
C06p15300 Brassica napus HOM05D002316 ORTHO05D002280 1.2e-87 327.8 416 49.0
Peaxi162Scf00038g02328 Petunia axillaris HOM05D002316 ORTHO05D002280 1.2e-87 327.8 437 47.8
BcaB02g10892 Brassica carinata HOM05D002316 ORTHO05D002280 1.6e-87 327.4 420 49.8
BcaB07g33301 Brassica carinata HOM05D002316 ORTHO05D002280 1.6e-87 327.4 415 50.8
Solyc03g123700.4 Solanum lycopersicum HOM05D002316 ORTHO05D002280 2.1e-87 327.0 459 46.8
BolC6t36705H Brassica oleracea HOM05D002316 ORTHO05D002280 7.8e-87 325.1 416 48.8
Sp1g40300 Schrenkiella parvula HOM05D002316 ORTHO05D002280 7.8e-87 325.1 441 48.8
EL10Ac6g14924 Beta vulgaris HOM05D002316 ORTHO05D002280 1.3e-86 324.3 456 45.4
Ca_09566_v3 Cicer arietinum L. HOM05D002316 ORTHO05D002280 1.3e-86 324.3 421 49.4
AT1G53800 Arabidopsis thaliana HOM05D002316 ORTHO05D002280 3.0e-86 323.2 430 48.8
DCAR_022638 Daucus carota HOM05D002316 ORTHO05D002280 3.0e-86 323.2 443 47.9
unitig_32.g10996 Utricularia gibba HOM05D002316 ORTHO05D002280 6.6e-86 322.0 418 48.1
THA.LOC104815594 Tarenaya hassleriana HOM05D002316 ORTHO05D002280 1.1e-85 321.2 441 45.6
Sopen03g041470 Solanum pennellii HOM05D002316 ORTHO05D002280 2.5e-85 320.1 459 46.6
ATR0053G043 Amborella trichopoda HOM05D002316 ORTHO05D002280 4.3e-85 319.3 421 46.8
THA.LOC104810398 Tarenaya hassleriana HOM05D002316 ORTHO05D002280 5.6e-85 318.9 449 45.0
TPR.G28875 Trifolium pratense HOM05D002316 ORTHO05D002280 5.6e-85 318.9 424 49.3
BraA05t20684Z Brassica rapa HOM05D002316 ORTHO05D002280 2.1e-84 317.0 422 48.6
A05p17910 Brassica napus HOM05D002316 ORTHO05D002280 3.6e-84 316.2 422 48.6
Ah.15g094840 Amaranthus hybridus HOM05D002316 ORTHO05D002280 1.1e-83 314.7 466 44.4
CARHR044090 Cardamine hirsuta HOM05D002316 ORTHO05D002280 5.3e-83 312.4 421 46.8
Ah.03g139400 Amaranthus hybridus HOM05D002316 ORTHO05D002280 2.0e-82 310.5 425 46.6
AUR62007994 Chenopodium quinoa HOM05D002316 ORTHO05D002280 1.3e-81 307.8 429 44.1
CDE10G0003 Ceratophyllum demersum HOM05D002316 ORTHO05D002280 2.2e-81 307.0 424 47.9
Eucgr.I02167 Eucalyptus grandis HOM05D002316 ORTHO05D002280 2.2e-81 307.0 424 45.8
Lalb_Chr04g0261261 Lupinus albus HOM05D002316 ORTHO05D002280 3.8e-81 306.2 417 47.7
PGR119G0057 Punica granatum HOM05D002316 ORTHO05D002280 1.9e-80 303.9 416 46.2
Lalb_Chr04g0253971 Lupinus albus HOM05D002316 ORTHO05D002280 2.4e-80 303.5 413 46.5
AUR62003176 Chenopodium quinoa HOM05D002316 ORTHO05D002280 3.2e-80 303.1 396 46.5
Aa31LG10G1510 Aethionema arabicum HOM05D002316 ORTHO05D002280 4.2e-80 302.8 418 47.8
Psat0s3082g0160 Pisum sativum HOM05D002316 ORTHO05D002280 4.2e-80 302.8 411 47.4
DCAR_016087 Daucus carota HOM05D002316 ORTHO05D002280 1.0e-78 298.1 424 47.6
TAR624G0517 Trochodendron aralioides HOM05D002316 ORTHO05D002280 5.1e-78 295.8 486 42.2
Lalb_Chr17g0343181 Lupinus albus HOM05D002316 ORTHO05D002280 4.3e-77 292.7 421 46.6
Migut.D00907 Erythranthe guttata HOM05D002316 ORTHO05D002280 6.2e-76 288.9 413 46.0
CDE10G1231 Ceratophyllum demersum HOM05D002316 ORTHO05D002280 8.1e-76 288.5 424 45.5
arahy.Tifrunner.gnm1.ann1.GJ1EJQ Arachis hypogaea HOM05D002316 ORTHO05D002280 1.2e-74 284.6 420 44.5
arahy.Tifrunner.gnm1.ann1.7Q31U7 Arachis hypogaea HOM05D002316 ORTHO05D002280 3.0e-70 270.0 386 46.4
SalBow6G6393 Salvia bowleyana HOM05D002316 ORTHO05D002280 1.5e-69 267.7 431 42.2
Hund18629 Selenicereus undatus HOM05D002316 ORTHO05D002280 1.5e-69 267.7 498 38.6
HPP92_027909 Vanilla planifolia HOM05D002316 ORTHO05D002280 4.3e-69 266.2 425 41.4
Sed0007223 Sechium edule HOM05D002316 ORTHO05D002280 1.1e-67 261.5 431 44.5
HPP92_024475 Vanilla planifolia HOM05D002316 ORTHO05D002280 3.1e-67 260.0 428 41.1
HPP92_024371 Vanilla planifolia HOM05D002316 ORTHO05D002280 9.0e-67 258.5 279 53.0
Os10g0198600 Oryza sativa ssp. japonica HOM05D002316 ORTHO05D002280 4.5e-66 256.1 435 39.3
Lj3g0022142 Lotus japonicus HOM05D002316 ORTHO05D002280 1.1e-64 251.5 413 44.6
SGA_v2.0_scaffold71G23943 Striga asiatica HOM05D002316 ORTHO05D002280 1.1e-61 241.5 429 39.6
Zm00001eb066360 Zea mays HOM05D002316 ORTHO05D002280 1.5e-61 241.1 327 43.7
SGA_v2.0_scaffold122G33301 Striga asiatica HOM05D000070 ORTHO05D002280 2.5e-61 240.4 392 42.6
ECA234G4725 Erigeron canadensis HOM05D002316 ORTHO05D002280 3.2e-56 223.4 325 47.1
Lsat_1_v5_gn_5_137661 Lactuca sativa HOM05D002316 ORTHO05D002280 1.3e-54 218.0 429 40.1
Hund18630 Selenicereus undatus HOM05D002316 ORTHO05D002280 1.9e-53 214.2 459 36.4
HanXRQChr12g0360051 Helianthus annuus HOM05D002316 ORTHO05D002280 6.9e-51 205.7 276 47.8
CSS0037592 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 4.4e-45 186.4 137 70.1
SEGI_28906 Sequoiadendron giganteum HOM05D002316 ORTHO05D002280 5.7e-45 186.0 264 43.6
CSS0001569 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 1.7e-44 184.5 117 78.6
CSS0010846 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 1.7e-44 184.5 117 78.6
CSS0007790 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 5.9e-42 176.0 119 74.8
CDE05G3243 Ceratophyllum demersum HOM05D002316 ORTHO05D002280 2.9e-41 173.7 112 75.0
Rhsim08G0245300 Rhododendron simsii HOM05D002316 ORTHO05D002280 6.5e-41 172.6 190 51.1
vmacro18717 Vaccinium macrocarpon HOM05D002316 ORTHO05D002280 4.8e-36 156.4 116 68.1
HanXRQChr02g0033821 Helianthus annuus HOM05D002316 ORTHO05D002280 4.1e-35 153.3 245 43.7
arahy.Tifrunner.gnm1.ann1.3AJ3RF Arachis hypogaea HOM05D002316 ORTHO05D002280 5.3e-35 152.9 108 70.4
arahy.Tifrunner.gnm1.ann1.L7TQPJ Arachis hypogaea HOM05D002316 ORTHO05D002280 5.3e-35 152.9 117 66.7
HanXRQChr10g0311621 Helianthus annuus HOM05D002316 ORTHO05D002280 2.0e-34 151.0 315 38.4
arahy.Tifrunner.gnm1.ann1.RGSX4D Arachis hypogaea HOM05D002316 ORTHO05D002280 4.5e-34 149.8 115 65.2
SEGI_23297 Sequoiadendron giganteum HOM05D002316 ORTHO05D002280 7.7e-34 149.1 279 38.7
vmacro18773 Vaccinium macrocarpon HOM05D002316 ORTHO05D002280 7.7e-34 149.1 122 61.5
CSS0023276 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 1.3e-33 148.3 98 74.5
Hund05697 Selenicereus undatus HOM05D002316 ORTHO05D002280 3.8e-33 146.7 306 35.3
Mapoly0056s0004 Marchantia polymorpha HOM05D002316 ORTHO05D002280 3.1e-27 127.1 329 30.7
SMO347G0244 Selaginella moellendorffii HOM05D002316 ORTHO05D002280 3.1e-27 127.1 312 31.4
Duzib160G0897 Durio zibethinus HOM05D002316 ORTHO05D002280 7.0e-27 125.9 111 66.7
AagrBONN_evm.TU.Sc2ySwM_362.2355 Anthoceros agrestis HOM05D002316 ORTHO05D002280 8.5e-25 119.0 233 34.8
arahy.Tifrunner.gnm1.ann1.VE80E0 Arachis hypogaea HOM05D002316 ORTHO05D002280 7.2e-24 115.9 119 55.5
Pp3c20_11380 Physcomitrium patens HOM05D002316 ORTHO05D002280 2.3e-22 110.9 362 29.3
SEGI_25181 Sequoiadendron giganteum HOM05D002316 ORTHO05D002280 8.8e-22 109.0 266 31.6
Pp3c23_5090 Physcomitrium patens HOM05D002316 ORTHO05D002280 5.4e-19 99.8 366 27.6
Lj9C539G6 Lonicera japonica HOM05D002316 ORTHO05D002280 1.6e-15 88.2 69 60.9
Psat1g193320 Pisum sativum HOM05D002316 ORTHO05D019804 4.7e-15 86.7 92 52.2
Lj9A539T86 Lonicera japonica HOM05D002316 ORTHO05D002280 1.3e-12 78.6 207 33.8
CBR_g30616 Chara braunii HOM05D002316 ORTHO05D002280 1.7e-12 78.2 296 29.4
Lj9A539G83 Lonicera japonica HOM05D002316 ORTHO05D002280 2.0e-10 71.2 100 44.0
CSS0004383 Camellia sinensis var. sinensis HOM05D000960 ORTHO05D000683 4.5e-10 70.1 88 56.8
CSS0028776 Camellia sinensis var. sinensis HOM05D000960 ORTHO05D000683 7.8e-10 69.3 115 47.8
CSS0036220 Camellia sinensis var. sinensis HOM05D000960 ORTHO05D000683 1.3e-09 68.6 134 44.8
TPR.G34410 Trifolium pratense HOM05D002316 ORTHO05D002280 4.7e-07 60.1 52 61.5
ATR0733G115 Amborella trichopoda HOM05D002316 ORTHO05D002280 6.1e-07 59.7 104 32.7
VMungo1127G0079 Vigna mungo HOM05D002316 ORTHO05D002280 5.2e-06 56.6 95 31.6


User provided reference genes

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